Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03050 and MMP_RS03055 are separated by 9 nucleotides MMP_RS03055 and MMP_RS03060 are separated by 94 nucleotides MMP_RS03060 and MMP_RS03065 are separated by 144 nucleotides MMP_RS03065 and MMP_RS03070 overlap by 8 nucleotides
MMP_RS03050: MMP_RS03050 - DUF115 domain-containing protein, at 575,501 to 576,217
_RS03050
MMP_RS03055: MMP_RS03055 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 576,227 to 576,937
_RS03055
MMP_RS03060: MMP_RS03060 - MBL fold metallo-hydrolase, at 577,032 to 577,814
_RS03060
MMP_RS03065: MMP_RS03065 - AzlC family ABC transporter permease, at 577,959 to 578,675
_RS03065
MMP_RS03070: MMP_RS03070 - AzlD domain-containing protein, at 578,668 to 578,976
_RS03070
Position (kb) 577
578 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 576.093 kb on + strand at 576.455 kb on + strand at 576.558 kb on - strand at 576.964 kb on - strand at 576.983 kb on - strand at 576.984 kb on + strand at 576.991 kb on + strand at 576.992 kb on - strand at 576.993 kb on + strand at 576.993 kb on + strand at 577.007 kb on - strand at 577.105 kb on - strand at 577.324 kb on + strand, within MMP_RS03060 at 577.358 kb on - strand, within MMP_RS03060 at 577.446 kb on + strand, within MMP_RS03060 at 577.520 kb on + strand, within MMP_RS03060 at 577.551 kb on + strand, within MMP_RS03060 at 577.557 kb on + strand, within MMP_RS03060 at 577.587 kb on + strand, within MMP_RS03060 at 577.595 kb on + strand, within MMP_RS03060 at 577.841 kb on + strand at 577.845 kb on - strand at 577.845 kb on - strand at 577.848 kb on + strand at 577.880 kb on + strand at 577.880 kb on + strand at 577.881 kb on - strand at 578.099 kb on + strand, within MMP_RS03065 at 578.179 kb on - strand, within MMP_RS03065 at 578.621 kb on - strand at 578.621 kb on - strand at 578.622 kb on + strand at 578.653 kb on - strand at 578.690 kb on - strand at 578.691 kb on + strand at 578.691 kb on + strand at 578.719 kb on - strand, within MMP_RS03070 at 578.719 kb on - strand, within MMP_RS03070 at 578.720 kb on + strand, within MMP_RS03070 at 578.720 kb on + strand, within MMP_RS03070 at 578.720 kb on + strand, within MMP_RS03070
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 576,093 + -2.1 576,455 + -2.7 576,558 - -1.9 576,964 - -0.0 576,983 - -0.2 576,984 + +3.0 576,991 + +0.4 576,992 - +0.5 576,993 + -0.1 576,993 + +0.2 577,007 - -0.3 577,105 - -0.5 577,324 + MMP_RS03060 0.37 -0.2 577,358 - MMP_RS03060 0.42 +0.5 577,446 + MMP_RS03060 0.53 -0.1 577,520 + MMP_RS03060 0.62 +0.5 577,551 + MMP_RS03060 0.66 -0.1 577,557 + MMP_RS03060 0.67 -0.1 577,587 + MMP_RS03060 0.71 -0.1 577,595 + MMP_RS03060 0.72 -0.0 577,841 + +0.7 577,845 - +0.3 577,845 - +0.0 577,848 + -0.1 577,880 + +0.2 577,880 + -0.4 577,881 - -0.1 578,099 + MMP_RS03065 0.20 +0.2 578,179 - MMP_RS03065 0.31 -0.0 578,621 - -0.2 578,621 - +0.4 578,622 + +0.1 578,653 - +0.4 578,690 - +0.2 578,691 + -0.1 578,691 + +0.2 578,719 - MMP_RS03070 0.17 -1.0 578,719 - MMP_RS03070 0.17 -0.2 578,720 + MMP_RS03070 0.17 -0.3 578,720 + MMP_RS03070 0.17 +0.6 578,720 + MMP_RS03070 0.17 -0.4
Or see this region's nucleotide sequence