Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00975 and MMP_RS00980 are separated by 142 nucleotides MMP_RS00980 and MMP_RS00985 are separated by 24 nucleotides MMP_RS00985 and MMP_RS00990 are separated by 112 nucleotides MMP_RS00990 and MMP_RS00995 are separated by 135 nucleotides
MMP_RS00975: MMP_RS00975 - HD domain-containing protein, at 181,696 to 183,072
_RS00975
MMP_RS00980: MMP_RS00980 - hypothetical protein, at 183,215 to 183,679
_RS00980
MMP_RS00985: MMP_RS00985 - CDC48 family AAA ATPase, at 183,704 to 186,070
_RS00985
MMP_RS00990: MMP_RS00990 - hypothetical protein, at 186,183 to 186,542
_RS00990
MMP_RS00995: MMP_RS00995 - phosphoribosylformylglycinamidine synthase I, at 186,678 to 187,487
_RS00995
Position (kb) 183
184
185
186
187 Strain fitness (log2 ratio) -1
0
1 at 182.714 kb on - strand, within MMP_RS00975 at 182.715 kb on + strand, within MMP_RS00975 at 182.782 kb on - strand, within MMP_RS00975 at 182.895 kb on - strand, within MMP_RS00975 at 182.950 kb on + strand at 183.001 kb on - strand at 183.007 kb on - strand at 183.022 kb on + strand at 183.031 kb on + strand at 183.082 kb on - strand at 183.096 kb on - strand at 183.114 kb on - strand at 183.114 kb on - strand at 183.160 kb on - strand at 183.160 kb on - strand at 183.161 kb on + strand at 183.164 kb on - strand at 183.164 kb on - strand at 183.165 kb on + strand at 183.165 kb on + strand at 183.172 kb on + strand at 183.192 kb on - strand at 183.198 kb on - strand at 183.198 kb on - strand at 183.198 kb on - strand at 183.236 kb on - strand at 183.248 kb on + strand at 183.248 kb on + strand at 183.344 kb on - strand, within MMP_RS00980 at 183.345 kb on + strand, within MMP_RS00980 at 183.345 kb on + strand, within MMP_RS00980 at 183.350 kb on - strand, within MMP_RS00980 at 183.351 kb on + strand, within MMP_RS00980 at 183.370 kb on - strand, within MMP_RS00980 at 183.371 kb on + strand, within MMP_RS00980 at 183.467 kb on - strand, within MMP_RS00980 at 183.540 kb on - strand, within MMP_RS00980 at 183.552 kb on - strand, within MMP_RS00980 at 183.611 kb on - strand, within MMP_RS00980 at 183.611 kb on - strand, within MMP_RS00980 at 183.612 kb on + strand, within MMP_RS00980 at 183.613 kb on - strand, within MMP_RS00980 at 183.613 kb on - strand, within MMP_RS00980 at 183.613 kb on - strand, within MMP_RS00980 at 183.614 kb on + strand, within MMP_RS00980 at 183.618 kb on - strand, within MMP_RS00980 at 183.619 kb on + strand, within MMP_RS00980 at 183.619 kb on + strand, within MMP_RS00980 at 183.634 kb on - strand at 183.689 kb on + strand at 183.689 kb on + strand at 183.800 kb on + strand at 183.813 kb on + strand at 183.923 kb on - strand at 184.097 kb on - strand, within MMP_RS00985 at 184.127 kb on - strand, within MMP_RS00985 at 184.128 kb on + strand, within MMP_RS00985 at 184.182 kb on + strand, within MMP_RS00985 at 184.291 kb on - strand, within MMP_RS00985 at 184.999 kb on - strand, within MMP_RS00985 at 185.004 kb on + strand, within MMP_RS00985 at 185.544 kb on - strand, within MMP_RS00985 at 185.545 kb on + strand, within MMP_RS00985 at 185.711 kb on - strand, within MMP_RS00985 at 185.885 kb on - strand at 186.029 kb on - strand at 186.174 kb on - strand at 186.415 kb on - strand, within MMP_RS00990 at 186.505 kb on - strand, within MMP_RS00990 at 186.560 kb on - strand at 186.574 kb on + strand at 186.625 kb on + strand at 186.683 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 182,714 - MMP_RS00975 0.74 -0.3 182,715 + MMP_RS00975 0.74 -0.2 182,782 - MMP_RS00975 0.79 +0.1 182,895 - MMP_RS00975 0.87 +0.1 182,950 + -0.1 183,001 - -0.7 183,007 - -0.2 183,022 + +0.1 183,031 + +0.2 183,082 - +1.3 183,096 - -0.2 183,114 - -0.1 183,114 - +0.0 183,160 - +0.3 183,160 - -0.2 183,161 + -0.0 183,164 - +0.0 183,164 - -0.3 183,165 + +0.1 183,165 + +0.1 183,172 + +0.6 183,192 - -0.5 183,198 - +0.0 183,198 - -0.3 183,198 - +0.5 183,236 - +0.1 183,248 + -0.2 183,248 + +0.3 183,344 - MMP_RS00980 0.28 +0.3 183,345 + MMP_RS00980 0.28 -0.4 183,345 + MMP_RS00980 0.28 +0.0 183,350 - MMP_RS00980 0.29 +0.1 183,351 + MMP_RS00980 0.29 +0.2 183,370 - MMP_RS00980 0.33 +0.4 183,371 + MMP_RS00980 0.34 -0.1 183,467 - MMP_RS00980 0.54 +0.3 183,540 - MMP_RS00980 0.70 -0.0 183,552 - MMP_RS00980 0.72 -0.4 183,611 - MMP_RS00980 0.85 +0.3 183,611 - MMP_RS00980 0.85 -0.2 183,612 + MMP_RS00980 0.85 -0.2 183,613 - MMP_RS00980 0.86 -0.1 183,613 - MMP_RS00980 0.86 -0.2 183,613 - MMP_RS00980 0.86 -0.2 183,614 + MMP_RS00980 0.86 -0.0 183,618 - MMP_RS00980 0.87 +0.1 183,619 + MMP_RS00980 0.87 +0.0 183,619 + MMP_RS00980 0.87 -0.3 183,634 - -0.6 183,689 + +0.1 183,689 + +0.4 183,800 + +0.4 183,813 + -0.2 183,923 - +0.1 184,097 - MMP_RS00985 0.17 -1.0 184,127 - MMP_RS00985 0.18 -1.0 184,128 + MMP_RS00985 0.18 +0.0 184,182 + MMP_RS00985 0.20 -0.1 184,291 - MMP_RS00985 0.25 -1.4 184,999 - MMP_RS00985 0.55 -1.6 185,004 + MMP_RS00985 0.55 -0.9 185,544 - MMP_RS00985 0.78 -0.6 185,545 + MMP_RS00985 0.78 +0.2 185,711 - MMP_RS00985 0.85 +0.3 185,885 - +0.3 186,029 - -0.5 186,174 - +0.1 186,415 - MMP_RS00990 0.64 -0.0 186,505 - MMP_RS00990 0.89 -0.0 186,560 - +0.3 186,574 + +1.1 186,625 + -0.0 186,683 - -0.2
Or see this region's nucleotide sequence