Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04635

Experiment: NAG 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK54_RS04630 and LRK54_RS04635 are separated by 103 nucleotidesLRK54_RS04635 and LRK54_RS04640 are separated by 24 nucleotidesLRK54_RS04640 and LRK54_RS04645 are separated by 37 nucleotides LRK54_RS04630: LRK54_RS04630 - energy-dependent translational throttle protein EttA, at 985,108 to 986,775 _RS04630 LRK54_RS04635: LRK54_RS04635 - orotidine-5'-phosphate decarboxylase, at 986,879 to 987,697 _RS04635 LRK54_RS04640: LRK54_RS04640 - hypothetical protein, at 987,722 to 987,979 _RS04640 LRK54_RS04645: LRK54_RS04645 - acyltransferase, at 988,017 to 989,210 _RS04645 Position (kb) 986 987 988Strain fitness (log2 ratio) -2 -1 0 1 2 3at 986.278 kb on + strand, within LRK54_RS04630at 986.278 kb on + strand, within LRK54_RS04630at 986.389 kb on + strand, within LRK54_RS04630at 986.389 kb on + strand, within LRK54_RS04630at 986.389 kb on + strand, within LRK54_RS04630at 986.389 kb on + strand, within LRK54_RS04630at 986.389 kb on + strand, within LRK54_RS04630at 986.689 kb on + strandat 986.689 kb on + strandat 986.689 kb on + strandat 986.689 kb on + strandat 986.689 kb on + strandat 986.689 kb on + strandat 986.689 kb on + strandat 986.689 kb on + strandat 986.698 kb on + strandat 986.758 kb on + strandat 986.758 kb on + strandat 986.758 kb on + strandat 986.758 kb on + strandat 986.758 kb on + strandat 986.758 kb on + strandat 986.758 kb on + strandat 986.758 kb on + strandat 986.758 kb on + strandat 987.775 kb on + strand, within LRK54_RS04640at 987.776 kb on - strand, within LRK54_RS04640at 987.834 kb on + strand, within LRK54_RS04640at 987.834 kb on + strand, within LRK54_RS04640at 987.834 kb on + strand, within LRK54_RS04640at 987.834 kb on + strand, within LRK54_RS04640at 987.834 kb on + strand, within LRK54_RS04640at 987.834 kb on + strand, within LRK54_RS04640at 987.834 kb on + strand, within LRK54_RS04640at 987.834 kb on + strand, within LRK54_RS04640at 987.834 kb on + strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 987.835 kb on - strand, within LRK54_RS04640at 988.000 kb on - strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.018 kb on + strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.019 kb on - strandat 988.023 kb on + strandat 988.023 kb on + strandat 988.023 kb on + strandat 988.023 kb on + strandat 988.023 kb on + strandat 988.023 kb on + strandat 988.024 kb on - strandat 988.096 kb on + strandat 988.097 kb on - strandat 988.162 kb on + strand, within LRK54_RS04645at 988.162 kb on + strand, within LRK54_RS04645at 988.162 kb on + strand, within LRK54_RS04645at 988.162 kb on + strand, within LRK54_RS04645at 988.163 kb on - strand, within LRK54_RS04645at 988.163 kb on - strand, within LRK54_RS04645at 988.163 kb on - strand, within LRK54_RS04645at 988.204 kb on + strand, within LRK54_RS04645at 988.246 kb on + strand, within LRK54_RS04645at 988.246 kb on + strand, within LRK54_RS04645at 988.246 kb on + strand, within LRK54_RS04645at 988.246 kb on + strand, within LRK54_RS04645at 988.246 kb on + strand, within LRK54_RS04645at 988.246 kb on + strand, within LRK54_RS04645at 988.246 kb on + strand, within LRK54_RS04645at 988.246 kb on + strand, within LRK54_RS04645at 988.247 kb on - strand, within LRK54_RS04645at 988.247 kb on - strand, within LRK54_RS04645at 988.247 kb on - strand, within LRK54_RS04645at 988.247 kb on - strand, within LRK54_RS04645at 988.247 kb on - strand, within LRK54_RS04645at 988.255 kb on + strand, within LRK54_RS04645at 988.255 kb on + strand, within LRK54_RS04645at 988.255 kb on + strand, within LRK54_RS04645at 988.255 kb on + strand, within LRK54_RS04645at 988.255 kb on + strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.256 kb on - strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.378 kb on + strand, within LRK54_RS04645at 988.379 kb on - strand, within LRK54_RS04645at 988.379 kb on - strand, within LRK54_RS04645at 988.379 kb on - strand, within LRK54_RS04645at 988.379 kb on - strand, within LRK54_RS04645at 988.379 kb on - strand, within LRK54_RS04645at 988.379 kb on - strand, within LRK54_RS04645at 988.379 kb on - strand, within LRK54_RS04645at 988.379 kb on - strand, within LRK54_RS04645at 988.379 kb on - strand, within LRK54_RS04645at 988.469 kb on + strand, within LRK54_RS04645at 988.469 kb on + strand, within LRK54_RS04645at 988.546 kb on + strand, within LRK54_RS04645at 988.546 kb on + strand, within LRK54_RS04645at 988.546 kb on + strand, within LRK54_RS04645at 988.546 kb on + strand, within LRK54_RS04645at 988.546 kb on + strand, within LRK54_RS04645at 988.546 kb on + strand, within LRK54_RS04645at 988.546 kb on + strand, within LRK54_RS04645at 988.546 kb on + strand, within LRK54_RS04645at 988.546 kb on + strand, within LRK54_RS04645at 988.547 kb on - strand, within LRK54_RS04645at 988.547 kb on - strand, within LRK54_RS04645at 988.547 kb on - strand, within LRK54_RS04645at 988.547 kb on - strand, within LRK54_RS04645at 988.639 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.640 kb on + strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.641 kb on - strand, within LRK54_RS04645at 988.681 kb on + strand, within LRK54_RS04645at 988.681 kb on + strand, within LRK54_RS04645at 988.681 kb on + strand, within LRK54_RS04645at 988.681 kb on + strand, within LRK54_RS04645at 988.681 kb on + strand, within LRK54_RS04645at 988.681 kb on + strand, within LRK54_RS04645at 988.681 kb on + strand, within LRK54_RS04645at 988.681 kb on + strand, within LRK54_RS04645at 988.681 kb on + strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645at 988.682 kb on - strand, within LRK54_RS04645

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG 20 mM
remove
986,278 + LRK54_RS04630 0.70 -0.7
986,278 + LRK54_RS04630 0.70 +0.7
986,389 + LRK54_RS04630 0.77 +0.7
986,389 + LRK54_RS04630 0.77 -1.7
986,389 + LRK54_RS04630 0.77 -1.1
986,389 + LRK54_RS04630 0.77 -0.9
986,389 + LRK54_RS04630 0.77 +0.9
986,689 + -1.1
986,689 + +1.7
986,689 + -2.2
986,689 + -2.3
986,689 + -0.7
986,689 + +0.2
986,689 + -1.8
986,689 + -0.6
986,698 + -0.3
986,758 + +0.4
986,758 + -0.2
986,758 + -0.5
986,758 + +0.2
986,758 + -0.7
986,758 + -0.9
986,758 + -0.5
986,758 + -0.2
986,758 + +0.3
987,775 + LRK54_RS04640 0.21 -1.4
987,776 - LRK54_RS04640 0.21 +1.1
987,834 + LRK54_RS04640 0.43 +0.1
987,834 + LRK54_RS04640 0.43 +0.2
987,834 + LRK54_RS04640 0.43 -0.7
987,834 + LRK54_RS04640 0.43 -0.4
987,834 + LRK54_RS04640 0.43 +0.7
987,834 + LRK54_RS04640 0.43 +0.2
987,834 + LRK54_RS04640 0.43 +0.7
987,834 + LRK54_RS04640 0.43 -1.9
987,834 + LRK54_RS04640 0.43 +0.7
987,835 - LRK54_RS04640 0.44 +2.4
987,835 - LRK54_RS04640 0.44 -0.6
987,835 - LRK54_RS04640 0.44 -1.1
987,835 - LRK54_RS04640 0.44 -1.0
987,835 - LRK54_RS04640 0.44 -0.2
987,835 - LRK54_RS04640 0.44 -1.9
987,835 - LRK54_RS04640 0.44 +0.5
987,835 - LRK54_RS04640 0.44 -0.7
987,835 - LRK54_RS04640 0.44 +0.9
987,835 - LRK54_RS04640 0.44 -0.2
987,835 - LRK54_RS04640 0.44 -0.4
987,835 - LRK54_RS04640 0.44 -0.7
988,000 - -0.3
988,018 + -0.5
988,018 + -0.0
988,018 + +0.2
988,018 + +0.5
988,018 + +0.9
988,018 + -1.1
988,018 + -0.4
988,018 + +1.0
988,018 + +3.0
988,018 + +0.8
988,018 + -1.9
988,018 + +0.3
988,018 + -0.6
988,018 + +0.8
988,019 - +0.5
988,019 - -0.9
988,019 - +0.3
988,019 - +0.3
988,019 - +0.1
988,019 - +0.7
988,019 - -0.0
988,019 - +0.2
988,019 - -0.8
988,019 - +0.6
988,019 - -0.2
988,019 - -0.1
988,019 - +1.1
988,019 - +0.2
988,023 + -0.7
988,023 + +2.7
988,023 + +0.1
988,023 + +1.7
988,023 + -0.0
988,023 + -1.3
988,024 - +0.1
988,096 + -1.5
988,097 - -0.7
988,162 + LRK54_RS04645 0.12 -0.7
988,162 + LRK54_RS04645 0.12 +1.3
988,162 + LRK54_RS04645 0.12 +1.1
988,162 + LRK54_RS04645 0.12 +1.7
988,163 - LRK54_RS04645 0.12 -0.1
988,163 - LRK54_RS04645 0.12 +1.1
988,163 - LRK54_RS04645 0.12 -0.0
988,204 + LRK54_RS04645 0.16 +0.5
988,246 + LRK54_RS04645 0.19 -0.3
988,246 + LRK54_RS04645 0.19 -0.9
988,246 + LRK54_RS04645 0.19 -0.9
988,246 + LRK54_RS04645 0.19 -1.6
988,246 + LRK54_RS04645 0.19 -0.4
988,246 + LRK54_RS04645 0.19 +1.3
988,246 + LRK54_RS04645 0.19 -0.7
988,246 + LRK54_RS04645 0.19 +0.1
988,247 - LRK54_RS04645 0.19 -0.9
988,247 - LRK54_RS04645 0.19 -0.0
988,247 - LRK54_RS04645 0.19 +0.5
988,247 - LRK54_RS04645 0.19 +0.7
988,247 - LRK54_RS04645 0.19 -1.3
988,255 + LRK54_RS04645 0.20 -0.7
988,255 + LRK54_RS04645 0.20 -0.2
988,255 + LRK54_RS04645 0.20 +0.5
988,255 + LRK54_RS04645 0.20 +0.3
988,255 + LRK54_RS04645 0.20 +0.4
988,256 - LRK54_RS04645 0.20 -0.0
988,256 - LRK54_RS04645 0.20 -1.0
988,256 - LRK54_RS04645 0.20 -0.9
988,256 - LRK54_RS04645 0.20 -0.8
988,256 - LRK54_RS04645 0.20 +1.1
988,256 - LRK54_RS04645 0.20 +0.5
988,256 - LRK54_RS04645 0.20 +0.4
988,256 - LRK54_RS04645 0.20 +0.0
988,256 - LRK54_RS04645 0.20 +0.3
988,256 - LRK54_RS04645 0.20 -0.2
988,256 - LRK54_RS04645 0.20 -0.0
988,256 - LRK54_RS04645 0.20 -1.0
988,378 + LRK54_RS04645 0.30 -2.2
988,378 + LRK54_RS04645 0.30 -0.6
988,378 + LRK54_RS04645 0.30 -1.8
988,378 + LRK54_RS04645 0.30 +1.3
988,378 + LRK54_RS04645 0.30 -0.4
988,378 + LRK54_RS04645 0.30 +0.3
988,378 + LRK54_RS04645 0.30 +0.0
988,378 + LRK54_RS04645 0.30 -0.3
988,378 + LRK54_RS04645 0.30 +0.7
988,378 + LRK54_RS04645 0.30 +0.9
988,378 + LRK54_RS04645 0.30 +0.4
988,379 - LRK54_RS04645 0.30 -0.7
988,379 - LRK54_RS04645 0.30 -0.1
988,379 - LRK54_RS04645 0.30 +0.1
988,379 - LRK54_RS04645 0.30 +0.4
988,379 - LRK54_RS04645 0.30 +0.1
988,379 - LRK54_RS04645 0.30 -1.0
988,379 - LRK54_RS04645 0.30 -0.4
988,379 - LRK54_RS04645 0.30 -1.4
988,379 - LRK54_RS04645 0.30 -0.4
988,469 + LRK54_RS04645 0.38 +0.7
988,469 + LRK54_RS04645 0.38 -0.7
988,546 + LRK54_RS04645 0.44 -0.2
988,546 + LRK54_RS04645 0.44 +0.0
988,546 + LRK54_RS04645 0.44 -0.2
988,546 + LRK54_RS04645 0.44 -1.7
988,546 + LRK54_RS04645 0.44 +0.7
988,546 + LRK54_RS04645 0.44 -0.3
988,546 + LRK54_RS04645 0.44 -0.6
988,546 + LRK54_RS04645 0.44 +0.3
988,546 + LRK54_RS04645 0.44 +0.3
988,547 - LRK54_RS04645 0.44 -1.0
988,547 - LRK54_RS04645 0.44 -0.7
988,547 - LRK54_RS04645 0.44 -0.2
988,547 - LRK54_RS04645 0.44 +1.3
988,639 + LRK54_RS04645 0.52 -2.1
988,640 + LRK54_RS04645 0.52 +0.7
988,640 + LRK54_RS04645 0.52 -0.1
988,640 + LRK54_RS04645 0.52 -0.6
988,640 + LRK54_RS04645 0.52 +0.7
988,640 + LRK54_RS04645 0.52 -0.1
988,640 + LRK54_RS04645 0.52 +0.2
988,640 + LRK54_RS04645 0.52 -1.0
988,640 + LRK54_RS04645 0.52 +0.7
988,640 + LRK54_RS04645 0.52 -1.1
988,640 + LRK54_RS04645 0.52 +0.1
988,640 + LRK54_RS04645 0.52 +0.1
988,641 - LRK54_RS04645 0.52 +0.0
988,641 - LRK54_RS04645 0.52 -0.3
988,641 - LRK54_RS04645 0.52 -0.7
988,641 - LRK54_RS04645 0.52 -0.0
988,641 - LRK54_RS04645 0.52 -0.7
988,641 - LRK54_RS04645 0.52 -2.0
988,641 - LRK54_RS04645 0.52 +0.4
988,641 - LRK54_RS04645 0.52 -0.3
988,641 - LRK54_RS04645 0.52 +0.5
988,641 - LRK54_RS04645 0.52 -0.0
988,641 - LRK54_RS04645 0.52 -0.2
988,641 - LRK54_RS04645 0.52 +0.1
988,641 - LRK54_RS04645 0.52 +0.7
988,641 - LRK54_RS04645 0.52 -0.9
988,681 + LRK54_RS04645 0.56 -0.3
988,681 + LRK54_RS04645 0.56 +1.1
988,681 + LRK54_RS04645 0.56 -0.3
988,681 + LRK54_RS04645 0.56 +0.0
988,681 + LRK54_RS04645 0.56 -1.6
988,681 + LRK54_RS04645 0.56 -0.3
988,681 + LRK54_RS04645 0.56 +0.5
988,681 + LRK54_RS04645 0.56 +0.7
988,681 + LRK54_RS04645 0.56 +0.1
988,682 - LRK54_RS04645 0.56 -0.7
988,682 - LRK54_RS04645 0.56 -0.3
988,682 - LRK54_RS04645 0.56 -0.4
988,682 - LRK54_RS04645 0.56 +0.4
988,682 - LRK54_RS04645 0.56 -0.1
988,682 - LRK54_RS04645 0.56 -0.3
988,682 - LRK54_RS04645 0.56 +0.3
988,682 - LRK54_RS04645 0.56 +0.2
988,682 - LRK54_RS04645 0.56 +0.6
988,682 - LRK54_RS04645 0.56 +0.1
988,682 - LRK54_RS04645 0.56 -0.1
988,682 - LRK54_RS04645 0.56 +1.7
988,682 - LRK54_RS04645 0.56 -0.3
988,682 - LRK54_RS04645 0.56 +0.0

Or see this region's nucleotide sequence