Strain Fitness in Pantoea sp. MT58 around IAI47_21295

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21285 and IAI47_21290 are separated by 240 nucleotidesIAI47_21290 and IAI47_21295 are separated by 149 nucleotidesIAI47_21295 and IAI47_21300 are separated by 103 nucleotidesIAI47_21300 and IAI47_21305 overlap by 4 nucleotides IAI47_21285: IAI47_21285 - amidohydrolase, at 512,775 to 513,962 _21285 IAI47_21290: IAI47_21290 - alpha/beta hydrolase, at 514,203 to 514,680 _21290 IAI47_21295: IAI47_21295 - DJ-1/PfpI family protein, at 514,830 to 515,549 _21295 IAI47_21300: IAI47_21300 - AzlD domain-containing protein, at 515,653 to 515,976 _21300 IAI47_21305: IAI47_21305 - AzlC family ABC transporter permease, at 515,973 to 516,641 _21305 Position (kb) 514 515 516Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 513.845 kb on + strandat 513.845 kb on + strandat 513.845 kb on + strandat 513.855 kb on + strandat 513.856 kb on - strandat 513.873 kb on + strandat 513.876 kb on - strandat 513.894 kb on + strandat 513.894 kb on + strandat 513.895 kb on - strandat 513.914 kb on + strandat 513.977 kb on + strandat 513.977 kb on + strandat 514.046 kb on + strandat 514.046 kb on + strandat 514.122 kb on + strandat 514.146 kb on + strandat 514.146 kb on + strandat 514.146 kb on + strandat 514.147 kb on - strandat 514.166 kb on + strandat 514.167 kb on - strandat 514.169 kb on + strandat 514.170 kb on - strandat 514.170 kb on - strandat 514.172 kb on + strandat 514.188 kb on - strandat 514.188 kb on - strandat 514.200 kb on + strandat 514.292 kb on + strand, within IAI47_21290at 514.347 kb on + strand, within IAI47_21290at 514.366 kb on - strand, within IAI47_21290at 514.366 kb on - strand, within IAI47_21290at 514.371 kb on + strand, within IAI47_21290at 514.372 kb on - strand, within IAI47_21290at 514.425 kb on + strand, within IAI47_21290at 514.529 kb on + strand, within IAI47_21290at 514.529 kb on + strand, within IAI47_21290at 514.529 kb on + strand, within IAI47_21290at 514.529 kb on + strand, within IAI47_21290at 514.530 kb on - strand, within IAI47_21290at 514.530 kb on - strand, within IAI47_21290at 514.575 kb on + strand, within IAI47_21290at 514.575 kb on + strand, within IAI47_21290at 514.576 kb on - strand, within IAI47_21290at 514.581 kb on + strand, within IAI47_21290at 514.599 kb on - strand, within IAI47_21290at 514.681 kb on + strandat 514.682 kb on - strandat 514.693 kb on + strandat 514.693 kb on + strandat 514.694 kb on - strandat 514.700 kb on - strandat 514.734 kb on - strandat 514.734 kb on - strandat 514.776 kb on - strandat 514.822 kb on + strandat 514.822 kb on + strandat 514.822 kb on + strandat 514.823 kb on - strandat 514.823 kb on - strandat 514.831 kb on + strandat 514.831 kb on + strandat 514.831 kb on + strandat 514.832 kb on - strandat 514.832 kb on - strandat 514.838 kb on + strandat 514.838 kb on + strandat 514.839 kb on - strandat 514.839 kb on - strandat 514.869 kb on + strandat 514.913 kb on + strand, within IAI47_21295at 514.913 kb on + strand, within IAI47_21295at 514.913 kb on + strand, within IAI47_21295at 514.914 kb on - strand, within IAI47_21295at 515.002 kb on + strand, within IAI47_21295at 515.002 kb on + strand, within IAI47_21295at 515.002 kb on + strand, within IAI47_21295at 515.003 kb on - strand, within IAI47_21295at 515.013 kb on + strand, within IAI47_21295at 515.014 kb on - strand, within IAI47_21295at 515.014 kb on - strand, within IAI47_21295at 515.204 kb on + strand, within IAI47_21295at 515.204 kb on + strand, within IAI47_21295at 515.205 kb on - strand, within IAI47_21295at 515.205 kb on - strand, within IAI47_21295at 515.241 kb on - strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.252 kb on + strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.253 kb on - strand, within IAI47_21295at 515.303 kb on + strand, within IAI47_21295at 515.304 kb on - strand, within IAI47_21295at 515.369 kb on + strand, within IAI47_21295at 515.369 kb on + strand, within IAI47_21295at 515.369 kb on + strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.370 kb on - strand, within IAI47_21295at 515.392 kb on - strand, within IAI47_21295at 515.520 kb on + strandat 515.521 kb on - strandat 515.521 kb on - strandat 515.521 kb on - strandat 515.549 kb on + strandat 515.549 kb on + strandat 515.549 kb on + strandat 515.549 kb on + strandat 515.590 kb on + strandat 515.604 kb on + strandat 515.604 kb on + strandat 515.604 kb on + strandat 515.605 kb on - strandat 515.605 kb on - strandat 515.628 kb on + strandat 515.628 kb on + strandat 515.629 kb on - strandat 515.660 kb on - strandat 515.674 kb on + strandat 515.674 kb on + strandat 515.674 kb on + strandat 515.740 kb on + strand, within IAI47_21300at 515.740 kb on + strand, within IAI47_21300at 515.740 kb on + strand, within IAI47_21300at 515.741 kb on - strand, within IAI47_21300at 515.743 kb on + strand, within IAI47_21300at 515.854 kb on + strand, within IAI47_21300at 515.854 kb on + strand, within IAI47_21300at 515.854 kb on + strand, within IAI47_21300at 515.855 kb on - strand, within IAI47_21300at 515.921 kb on + strand, within IAI47_21300at 515.921 kb on + strand, within IAI47_21300at 515.921 kb on + strand, within IAI47_21300at 515.921 kb on + strand, within IAI47_21300at 515.921 kb on + strand, within IAI47_21300at 515.921 kb on + strand, within IAI47_21300at 515.921 kb on + strand, within IAI47_21300at 515.940 kb on + strand, within IAI47_21300at 515.940 kb on + strand, within IAI47_21300at 515.940 kb on + strand, within IAI47_21300at 515.940 kb on + strand, within IAI47_21300at 515.940 kb on + strand, within IAI47_21300at 515.940 kb on + strand, within IAI47_21300at 515.941 kb on - strand, within IAI47_21300at 515.941 kb on - strand, within IAI47_21300at 515.941 kb on - strand, within IAI47_21300at 516.063 kb on + strand, within IAI47_21305at 516.064 kb on - strand, within IAI47_21305at 516.224 kb on + strand, within IAI47_21305at 516.366 kb on + strand, within IAI47_21305

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
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513,845 + -0.5
513,845 + -0.9
513,845 + -0.9
513,855 + +1.1
513,856 - +2.0
513,873 + +2.8
513,876 - -2.9
513,894 + +1.6
513,894 + -2.2
513,895 - -0.2
513,914 + -1.4
513,977 + +0.4
513,977 + +2.3
514,046 + -1.5
514,046 + +2.9
514,122 + -1.9
514,146 + +0.4
514,146 + -2.2
514,146 + +0.1
514,147 - +1.3
514,166 + -1.9
514,167 - -0.5
514,169 + -0.0
514,170 - -0.9
514,170 - +1.1
514,172 + +0.7
514,188 - -3.1
514,188 - +1.4
514,200 + -0.9
514,292 + IAI47_21290 0.19 +1.8
514,347 + IAI47_21290 0.30 +0.7
514,366 - IAI47_21290 0.34 -0.7
514,366 - IAI47_21290 0.34 -1.5
514,371 + IAI47_21290 0.35 +2.1
514,372 - IAI47_21290 0.35 -1.0
514,425 + IAI47_21290 0.46 -0.0
514,529 + IAI47_21290 0.68 +0.7
514,529 + IAI47_21290 0.68 -0.4
514,529 + IAI47_21290 0.68 +0.4
514,529 + IAI47_21290 0.68 +0.7
514,530 - IAI47_21290 0.68 -1.2
514,530 - IAI47_21290 0.68 -0.6
514,575 + IAI47_21290 0.78 -2.4
514,575 + IAI47_21290 0.78 -0.4
514,576 - IAI47_21290 0.78 +0.6
514,581 + IAI47_21290 0.79 -1.9
514,599 - IAI47_21290 0.83 +1.3
514,681 + +2.0
514,682 - -2.2
514,693 + +2.0
514,693 + +0.5
514,694 - +0.6
514,700 - -1.9
514,734 - -0.2
514,734 - +2.2
514,776 - -1.7
514,822 + -2.7
514,822 + -0.0
514,822 + +0.4
514,823 - -0.4
514,823 - +1.2
514,831 + -0.9
514,831 + +2.7
514,831 + -1.4
514,832 - -0.6
514,832 - -2.6
514,838 + -1.4
514,838 + +0.1
514,839 - +0.4
514,839 - -0.0
514,869 + +0.1
514,913 + IAI47_21295 0.12 +1.9
514,913 + IAI47_21295 0.12 -0.7
514,913 + IAI47_21295 0.12 +2.0
514,914 - IAI47_21295 0.12 -0.9
515,002 + IAI47_21295 0.24 -2.1
515,002 + IAI47_21295 0.24 -0.8
515,002 + IAI47_21295 0.24 +0.4
515,003 - IAI47_21295 0.24 +1.6
515,013 + IAI47_21295 0.25 +2.0
515,014 - IAI47_21295 0.26 +0.3
515,014 - IAI47_21295 0.26 +0.4
515,204 + IAI47_21295 0.52 -3.0
515,204 + IAI47_21295 0.52 +2.6
515,205 - IAI47_21295 0.52 +0.1
515,205 - IAI47_21295 0.52 -0.9
515,241 - IAI47_21295 0.57 +4.7
515,252 + IAI47_21295 0.59 +3.5
515,252 + IAI47_21295 0.59 -0.2
515,252 + IAI47_21295 0.59 -1.0
515,252 + IAI47_21295 0.59 -1.9
515,252 + IAI47_21295 0.59 +0.5
515,252 + IAI47_21295 0.59 -2.3
515,252 + IAI47_21295 0.59 +1.0
515,253 - IAI47_21295 0.59 +1.4
515,253 - IAI47_21295 0.59 -1.6
515,253 - IAI47_21295 0.59 +1.6
515,253 - IAI47_21295 0.59 -1.6
515,253 - IAI47_21295 0.59 +0.9
515,253 - IAI47_21295 0.59 +2.3
515,303 + IAI47_21295 0.66 -1.9
515,304 - IAI47_21295 0.66 -1.6
515,369 + IAI47_21295 0.75 +1.0
515,369 + IAI47_21295 0.75 -1.4
515,369 + IAI47_21295 0.75 +2.2
515,370 - IAI47_21295 0.75 +1.6
515,370 - IAI47_21295 0.75 +1.0
515,370 - IAI47_21295 0.75 +2.0
515,370 - IAI47_21295 0.75 +1.2
515,370 - IAI47_21295 0.75 -0.6
515,370 - IAI47_21295 0.75 -0.7
515,370 - IAI47_21295 0.75 -1.0
515,370 - IAI47_21295 0.75 +3.0
515,392 - IAI47_21295 0.78 -0.1
515,520 + -0.6
515,521 - -1.0
515,521 - -1.5
515,521 - -1.0
515,549 + -1.9
515,549 + +2.1
515,549 + +1.1
515,549 + +0.1
515,590 + +0.1
515,604 + -2.7
515,604 + -2.4
515,604 + +1.3
515,605 - +0.5
515,605 - -1.3
515,628 + +0.6
515,628 + -2.0
515,629 - +0.7
515,660 - -1.3
515,674 + +1.0
515,674 + +3.0
515,674 + -2.3
515,740 + IAI47_21300 0.27 -1.4
515,740 + IAI47_21300 0.27 -0.0
515,740 + IAI47_21300 0.27 +3.3
515,741 - IAI47_21300 0.27 -0.4
515,743 + IAI47_21300 0.28 -2.4
515,854 + IAI47_21300 0.62 +0.9
515,854 + IAI47_21300 0.62 +0.9
515,854 + IAI47_21300 0.62 -1.9
515,855 - IAI47_21300 0.62 +0.6
515,921 + IAI47_21300 0.83 +0.4
515,921 + IAI47_21300 0.83 -1.2
515,921 + IAI47_21300 0.83 -2.6
515,921 + IAI47_21300 0.83 +1.4
515,921 + IAI47_21300 0.83 -2.5
515,921 + IAI47_21300 0.83 +0.7
515,921 + IAI47_21300 0.83 -0.6
515,940 + IAI47_21300 0.89 -0.4
515,940 + IAI47_21300 0.89 -0.0
515,940 + IAI47_21300 0.89 +0.4
515,940 + IAI47_21300 0.89 -1.0
515,940 + IAI47_21300 0.89 -1.7
515,940 + IAI47_21300 0.89 -1.5
515,941 - IAI47_21300 0.89 -0.6
515,941 - IAI47_21300 0.89 -0.2
515,941 - IAI47_21300 0.89 +2.2
516,063 + IAI47_21305 0.13 +0.8
516,064 - IAI47_21305 0.14 -2.6
516,224 + IAI47_21305 0.38 +0.7
516,366 + IAI47_21305 0.59 -1.0

Or see this region's nucleotide sequence