Strain Fitness in Pantoea sp. MT58 around IAI47_15035

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,169,769	+		IAI47_15030	0.52	+0.9
3,169,769	+		IAI47_15030	0.52	-0.5
3,169,804	+		IAI47_15030	0.54	+1.3
3,169,804	+		IAI47_15030	0.54	+0.9
3,169,804	+		IAI47_15030	0.54	-0.7
3,169,804	+		IAI47_15030	0.54	-0.5
3,169,805	-		IAI47_15030	0.54	-0.9
3,169,805	-		IAI47_15030	0.54	-1.9
3,169,805	-		IAI47_15030	0.54	+1.2
3,169,807	+		IAI47_15030	0.54	-1.8
3,169,807	+		IAI47_15030	0.54	-1.5
3,169,808	-		IAI47_15030	0.55	-2.5
3,170,072	+		IAI47_15030	0.70	-1.8
3,170,073	-		IAI47_15030	0.71	-1.0
3,170,098	-		IAI47_15030	0.72	-1.1
3,170,098	-		IAI47_15030	0.72	-0.6
3,170,137	+		IAI47_15030	0.74	+1.5
3,170,138	-		IAI47_15030	0.74	-1.1
3,170,138	-		IAI47_15030	0.74	+1.4
3,170,230	+		IAI47_15030	0.80	-0.2
3,170,242	+		IAI47_15030	0.81	-0.1
3,170,242	+		IAI47_15030	0.81	-1.3
3,170,242	+		IAI47_15030	0.81	-1.5
3,170,242	+		IAI47_15030	0.81	-2.0
3,170,243	-		IAI47_15030	0.81	-2.3
3,170,243	-		IAI47_15030	0.81	-1.8
3,170,255	-		IAI47_15030	0.82	-2.7
3,170,257	+		IAI47_15030	0.82	-2.0
3,170,257	+		IAI47_15030	0.82	-1.3
3,170,289	+		IAI47_15030	0.84	+1.0
3,170,297	+		IAI47_15030	0.84	-2.8
3,170,298	-		IAI47_15030	0.84	+0.9
3,170,311	+		IAI47_15030	0.85	-0.8
3,170,311	+		IAI47_15030	0.85	+1.0
3,170,311	+		IAI47_15030	0.85	-3.2
3,170,311	+		IAI47_15030	0.85	-3.6
3,170,312	-		IAI47_15030	0.85	+0.3
3,170,338	-		IAI47_15030	0.87	-1.7
3,170,425	+				-1.0
3,170,425	+				+2.5
3,170,426	-				+1.0
3,170,426	-				+0.3
3,170,426	-				-1.8
3,170,426	-				+0.9
3,170,426	-				-0.1
3,170,426	-				-2.1
3,170,442	+				+0.7
3,170,442	+				-0.5
3,170,443	-				+1.6
3,170,443	-				+3.7
3,170,461	+				-0.5
3,170,461	+				-2.7
3,170,462	-				-0.1
3,170,462	-				+1.0
3,170,462	-				-1.1
3,170,462	-				+1.0
3,170,521	+				+1.4
3,170,521	+				+1.1
3,170,521	+				+0.3
3,170,521	+				+1.4
3,170,521	+				-1.1
3,170,522	-				+0.2
3,170,522	-				+1.1
3,170,522	-				+0.9
3,170,522	-				+0.3
3,170,524	+				-2.5
3,170,525	-				-1.7
3,170,525	-				+0.4
3,170,538	+				+2.1
3,170,566	+				+1.9
3,170,567	-				+0.3
3,170,596	+				-0.1
3,170,596	+				-0.3
3,170,596	+				-0.7
3,170,596	+				-2.0
3,170,597	-				+1.9
3,170,597	-				-0.9
3,170,648	+				-0.1
3,170,648	+				+0.2
3,170,674	+				-1.7
3,170,674	+				+0.3
3,170,674	+				-0.3
3,170,675	-				+0.3
3,170,680	-				+0.2
3,170,680	-				-1.1
3,170,686	-				-0.9
3,170,698	+				-1.4
3,170,713	+				+0.5
3,170,714	-				+0.3
3,170,772	+				-2.0
3,170,773	-				-1.3
3,170,931	+		IAI47_15035	0.14	-0.9
3,170,931	+		IAI47_15035	0.14	+1.3
3,170,931	+		IAI47_15035	0.14	-1.6
3,170,932	-		IAI47_15035	0.14	-0.5
3,170,932	-		IAI47_15035	0.14	-0.3
3,170,934	+		IAI47_15035	0.14	-3.1
3,170,934	+		IAI47_15035	0.14	-1.5
3,170,935	-		IAI47_15035	0.14	-0.6
3,170,935	-		IAI47_15035	0.14	-0.5
3,170,952	+		IAI47_15035	0.16	+0.6
3,170,952	+		IAI47_15035	0.16	-0.7
3,170,952	+		IAI47_15035	0.16	+0.1
3,170,952	+		IAI47_15035	0.16	-2.4
3,170,985	+		IAI47_15035	0.19	+0.4
3,170,986	-		IAI47_15035	0.19	-1.5
3,170,986	-		IAI47_15035	0.19	+1.5
3,170,986	-		IAI47_15035	0.19	+0.7
3,171,210	+		IAI47_15035	0.38	+1.3
3,171,210	+		IAI47_15035	0.38	-1.9
3,171,210	+		IAI47_15035	0.38	-2.4
3,171,210	+		IAI47_15035	0.38	-0.1
3,171,211	-		IAI47_15035	0.38	-0.7
3,171,257	+		IAI47_15035	0.42	-1.8
3,171,290	+		IAI47_15035	0.45	+1.0
3,171,290	+		IAI47_15035	0.45	+0.6
3,171,290	+		IAI47_15035	0.45	-0.2
3,171,290	+		IAI47_15035	0.45	-0.4
3,171,290	+		IAI47_15035	0.45	-0.2
3,171,291	-		IAI47_15035	0.45	+1.2
3,171,291	-		IAI47_15035	0.45	+2.3
3,171,291	-		IAI47_15035	0.45	-1.3
3,171,402	+		IAI47_15035	0.54	+2.1
3,171,402	+		IAI47_15035	0.54	+1.8
3,171,420	+		IAI47_15035	0.56	-2.6
3,171,421	-		IAI47_15035	0.56	-0.8
3,171,447	+		IAI47_15035	0.58	+0.6
3,171,448	-		IAI47_15035	0.58	+1.4
3,171,448	-		IAI47_15035	0.58	+0.4
3,171,448	-		IAI47_15035	0.58	-0.8
3,171,604	+		IAI47_15035	0.71	+0.5
3,171,604	+		IAI47_15035	0.71	-0.8
3,171,604	+		IAI47_15035	0.71	+0.5
3,171,604	+		IAI47_15035	0.71	+2.1
3,171,604	+		IAI47_15035	0.71	+1.1
3,171,604	+		IAI47_15035	0.71	-0.5
3,171,605	-		IAI47_15035	0.71	+0.3
3,171,605	-		IAI47_15035	0.71	+0.0
3,171,605	-		IAI47_15035	0.71	+1.9
3,171,605	-		IAI47_15035	0.71	+0.9
3,171,605	-		IAI47_15035	0.71	+1.0
3,171,663	+		IAI47_15035	0.76	+1.1
3,171,761	-		IAI47_15035	0.85	-0.5
3,171,799	+		IAI47_15035	0.88	-0.7
3,171,799	+		IAI47_15035	0.88	-2.0
3,171,800	-		IAI47_15035	0.88	-0.9
3,171,800	-		IAI47_15035	0.88	+0.3
3,171,800	-		IAI47_15035	0.88	+0.0
3,171,885	+				-0.2
3,171,885	+				+0.9
3,171,886	-				+0.5
3,171,886	-				-3.9
3,171,886	-				-2.5
3,171,886	-				+0.9
3,171,956	+				+0.0
3,171,957	-				+0.9
3,171,985	-				-0.5
3,171,987	+				-1.5
3,172,002	+				-0.5
3,172,002	+				+0.1
3,172,002	+				+0.3
3,172,003	-				+0.7
3,172,047	+				-2.6
3,172,047	+				-0.7
3,172,066	-				+0.5
3,172,066	-				-0.1
3,172,066	-				+0.2
3,172,066	-				-1.9
3,172,066	-				-2.0
3,172,172	+		IAI47_15040	0.17	+2.0
3,172,172	+		IAI47_15040	0.17	+0.6
3,172,173	-		IAI47_15040	0.17	-2.5
3,172,238	+		IAI47_15040	0.25	+0.7
3,172,244	-		IAI47_15040	0.25	+0.9
3,172,257	+		IAI47_15040	0.27	+0.0
3,172,258	-		IAI47_15040	0.27	-1.6
3,172,258	-		IAI47_15040	0.27	-0.1
3,172,258	-		IAI47_15040	0.27	-2.2
3,172,258	-		IAI47_15040	0.27	-0.7
3,172,653	+		IAI47_15040	0.73	+1.4
3,172,653	+		IAI47_15040	0.73	+3.2
3,172,653	+		IAI47_15040	0.73	-1.5
3,172,653	+		IAI47_15040	0.73	-2.4
3,172,653	+		IAI47_15040	0.73	-1.1
3,172,653	+		IAI47_15040	0.73	-2.9
3,172,653	+		IAI47_15040	0.73	+1.3
3,172,654	-		IAI47_15040	0.73	-1.1
3,172,654	-		IAI47_15040	0.73	-0.8
3,172,654	-		IAI47_15040	0.73	+1.9
3,172,657	+		IAI47_15040	0.73	+1.7
3,172,657	+		IAI47_15040	0.73	+2.0
3,172,657	+		IAI47_15040	0.73	+0.9
3,172,657	+		IAI47_15040	0.73	-1.5
3,172,658	-		IAI47_15040	0.73	+1.2
3,172,719	-		IAI47_15040	0.80	-2.5
3,172,719	-		IAI47_15040	0.80	+1.6
3,172,789	-		IAI47_15040	0.89	+1.6
3,172,789	-		IAI47_15040	0.89	+0.3
3,172,890	+				-2.0
3,172,891	-				+0.9
3,172,897	+				+1.1
3,172,898	-				+0.2
3,172,898	-				-0.1
3,172,898	-				-3.0
3,172,898	-				-0.2
3,172,898	-				-0.9
3,172,914	+				-0.5
3,172,915	-				-0.6
3,172,915	-				-0.5