Strain Fitness in Pantoea sp. MT58 around IAI47_13120

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,770,850	+		IAI47_13110	0.86	+1.4
2,770,898	+				+1.4
2,770,898	+				+0.9
2,770,899	-				+1.2
2,770,899	-				+2.0
2,770,920	+				-2.4
2,770,921	-				+1.6
2,770,926	-				+2.6
2,770,964	+				-2.2
2,770,965	-				-2.4
2,770,965	-				+0.9
2,771,149	+		IAI47_13115	0.26	-1.6
2,771,183	+		IAI47_13115	0.30	-0.4
2,771,183	+		IAI47_13115	0.30	+0.1
2,771,183	+		IAI47_13115	0.30	+0.7
2,771,184	-		IAI47_13115	0.30	+0.3
2,771,184	-		IAI47_13115	0.30	+0.3
2,771,184	-		IAI47_13115	0.30	+0.6
2,771,220	-		IAI47_13115	0.34	+0.0
2,771,237	+		IAI47_13115	0.36	-0.7
2,771,238	-		IAI47_13115	0.36	+0.3
2,771,238	-		IAI47_13115	0.36	-1.4
2,771,239	+		IAI47_13115	0.36	-1.8
2,771,239	+		IAI47_13115	0.36	-0.7
2,771,239	+		IAI47_13115	0.36	+0.7
2,771,239	+		IAI47_13115	0.36	-2.7
2,771,239	+		IAI47_13115	0.36	-1.1
2,771,239	+		IAI47_13115	0.36	-2.7
2,771,240	-		IAI47_13115	0.36	-1.1
2,771,240	-		IAI47_13115	0.36	+0.4
2,771,240	-		IAI47_13115	0.36	+0.9
2,771,240	-		IAI47_13115	0.36	-0.1
2,771,240	-		IAI47_13115	0.36	+0.4
2,771,240	-		IAI47_13115	0.36	+0.7
2,771,240	-		IAI47_13115	0.36	-1.4
2,771,240	-		IAI47_13115	0.36	+0.4
2,771,240	-		IAI47_13115	0.36	-2.8
2,771,240	-		IAI47_13115	0.36	-0.1
2,771,240	-		IAI47_13115	0.36	+2.5
2,771,240	-		IAI47_13115	0.36	-2.3
2,771,240	-		IAI47_13115	0.36	+1.0
2,771,265	-		IAI47_13115	0.39	+2.4
2,771,265	-		IAI47_13115	0.39	+0.1
2,771,306	+		IAI47_13115	0.44	+1.8
2,771,306	+		IAI47_13115	0.44	+2.8
2,771,307	-		IAI47_13115	0.44	-0.9
2,771,414	+		IAI47_13115	0.56	+3.1
2,771,414	+		IAI47_13115	0.56	-1.1
2,771,415	-		IAI47_13115	0.56	-2.1
2,771,415	-		IAI47_13115	0.56	+0.1
2,771,415	-		IAI47_13115	0.56	-0.9
2,771,415	-		IAI47_13115	0.56	-1.2
2,771,415	-		IAI47_13115	0.56	-0.2
2,771,415	-		IAI47_13115	0.56	+1.1
2,771,437	+		IAI47_13115	0.58	-0.8
2,771,437	+		IAI47_13115	0.58	+1.4
2,771,437	+		IAI47_13115	0.58	+0.3
2,771,437	+		IAI47_13115	0.58	-0.4
2,771,437	+		IAI47_13115	0.58	+0.0
2,771,438	-		IAI47_13115	0.58	-2.7
2,771,438	-		IAI47_13115	0.58	+0.3
2,771,438	-		IAI47_13115	0.58	-0.9
2,771,438	-		IAI47_13115	0.58	+1.1
2,771,517	-		IAI47_13115	0.67	-1.6
2,771,611	+		IAI47_13115	0.77	+1.5
2,771,612	-		IAI47_13115	0.77	-1.0
2,771,612	-		IAI47_13115	0.77	-1.9
2,771,612	-		IAI47_13115	0.77	-1.6
2,771,612	-		IAI47_13115	0.77	-1.8
2,771,620	+		IAI47_13115	0.78	-1.3
2,771,621	-		IAI47_13115	0.78	+0.8
2,771,658	-		IAI47_13115	0.82	+0.7
2,771,682	+		IAI47_13115	0.85	-1.4
2,771,750	+				+0.3
2,771,751	-				+0.2
2,771,751	-				-0.1
2,771,751	-				+0.8
2,771,751	-				-0.5
2,771,827	+				+0.4
2,771,828	-				-0.9
2,771,856	+				-2.1
2,771,856	+				-1.5
2,771,857	-				-0.9
2,771,857	-				-2.5
2,771,857	-				+1.1
2,771,888	-				-1.4
2,771,983	+		IAI47_13120	0.18	+1.2
2,771,983	+		IAI47_13120	0.18	-0.4
2,771,983	+		IAI47_13120	0.18	+0.8
2,771,983	+		IAI47_13120	0.18	-2.3
2,771,984	-		IAI47_13120	0.18	-0.2
2,771,984	-		IAI47_13120	0.18	+1.2
2,771,984	-		IAI47_13120	0.18	-1.8
2,771,984	-		IAI47_13120	0.18	+3.5
2,772,132	+		IAI47_13120	0.34	+0.3
2,772,132	+		IAI47_13120	0.34	-1.1
2,772,133	-		IAI47_13120	0.34	+1.4
2,772,133	-		IAI47_13120	0.34	+0.4
2,772,133	-		IAI47_13120	0.34	-1.3
2,772,182	+		IAI47_13120	0.40	-0.1
2,772,203	+		IAI47_13120	0.42	+0.6
2,772,203	+		IAI47_13120	0.42	+0.5
2,772,203	+		IAI47_13120	0.42	+0.4
2,772,203	+		IAI47_13120	0.42	-0.9
2,772,203	+		IAI47_13120	0.42	-1.4
2,772,203	+		IAI47_13120	0.42	-0.4
2,772,203	+		IAI47_13120	0.42	-0.7
2,772,203	+		IAI47_13120	0.42	+0.5
2,772,203	+		IAI47_13120	0.42	+0.5
2,772,204	-		IAI47_13120	0.42	+0.5
2,772,204	-		IAI47_13120	0.42	+0.6
2,772,204	-		IAI47_13120	0.42	-1.1
2,772,204	-		IAI47_13120	0.42	+1.3
2,772,225	+		IAI47_13120	0.44	+1.8
2,772,226	-		IAI47_13120	0.44	-2.6
2,772,457	+		IAI47_13120	0.69	-1.3
2,772,458	-		IAI47_13120	0.69	-3.3
2,772,538	+		IAI47_13120	0.78	+0.9
2,772,538	+		IAI47_13120	0.78	-0.3
2,772,538	+		IAI47_13120	0.78	+0.8
2,772,539	-		IAI47_13120	0.78	-0.8
2,772,658	+				-2.4
2,772,658	+				-0.7
2,772,658	+				-0.7
2,772,658	+				+1.0
2,772,658	+				-0.2
2,772,658	+				+0.0
2,772,658	+				-2.6
2,772,659	-				+0.9
2,772,659	-				+0.7
2,772,659	-				+0.6
2,772,659	-				-0.3
2,772,689	+				-1.4
2,772,689	+				+0.3
2,772,690	-				-2.3
2,772,724	+				+0.8
2,772,725	-				-1.4
2,772,732	+				+0.4
2,772,733	-				-2.1
2,772,736	+				-1.8
2,772,736	+				+1.6
2,772,736	+				-0.7
2,772,737	-				-0.5
2,772,737	-				-1.3
2,772,737	-				-0.2
2,772,790	+				-2.0
2,772,838	+				-0.4
2,772,838	+				-0.6
2,772,935	+				+1.5
2,772,935	+				+1.0
2,772,935	+				+1.2
2,772,936	-				-0.0
2,772,936	-				+1.3
2,772,936	-				+0.3
2,772,936	-				-0.0
2,772,936	-				-3.1
2,772,937	+				-0.1
2,772,937	+				+0.4
2,772,937	+				-0.6
2,772,938	-				+1.4
2,772,993	-		IAI47_13125	0.13	-0.3
2,773,001	+		IAI47_13125	0.14	-2.3
2,773,001	+		IAI47_13125	0.14	-1.3
2,773,001	+		IAI47_13125	0.14	+0.0
2,773,001	+		IAI47_13125	0.14	-0.2
2,773,002	-		IAI47_13125	0.14	-1.1
2,773,002	-		IAI47_13125	0.14	+0.9
2,773,002	-		IAI47_13125	0.14	+0.9
2,773,002	-		IAI47_13125	0.14	+0.5
2,773,026	-		IAI47_13125	0.15	-0.4
2,773,026	-		IAI47_13125	0.15	+0.7
2,773,026	-		IAI47_13125	0.15	-0.1
2,773,111	+		IAI47_13125	0.21	-2.7
2,773,112	-		IAI47_13125	0.21	+0.1
2,773,112	-		IAI47_13125	0.21	+0.5
2,773,112	-		IAI47_13125	0.21	+2.0
2,773,262	+		IAI47_13125	0.31	-0.3
2,773,263	-		IAI47_13125	0.31	+0.9
2,773,263	-		IAI47_13125	0.31	+1.7
2,773,263	-		IAI47_13125	0.31	-2.1
2,773,263	-		IAI47_13125	0.31	-0.9
2,773,280	+		IAI47_13125	0.32	-1.1
2,773,280	+		IAI47_13125	0.32	-1.1
2,773,280	+		IAI47_13125	0.32	+0.6
2,773,281	-		IAI47_13125	0.32	-2.4
2,773,281	-		IAI47_13125	0.32	-0.1
2,773,281	-		IAI47_13125	0.32	-0.8
2,773,281	-		IAI47_13125	0.32	+0.2
2,773,342	+		IAI47_13125	0.36	-0.7
2,773,342	+		IAI47_13125	0.36	+2.5
2,773,343	-		IAI47_13125	0.36	+2.3
2,773,343	-		IAI47_13125	0.36	-2.6
2,773,357	+		IAI47_13125	0.37	-0.5
2,773,411	+		IAI47_13125	0.40	-1.6
2,773,456	+		IAI47_13125	0.43	+1.5
2,773,456	+		IAI47_13125	0.43	-2.9
2,773,456	+		IAI47_13125	0.43	-0.8
2,773,456	+		IAI47_13125	0.43	+2.7
2,773,456	+		IAI47_13125	0.43	+1.2
2,773,473	+		IAI47_13125	0.45	+1.9
2,773,474	-		IAI47_13125	0.45	+0.2
2,773,517	+		IAI47_13125	0.47	-0.5
2,773,517	+		IAI47_13125	0.47	-0.2
2,773,518	-		IAI47_13125	0.47	+1.5
2,773,518	-		IAI47_13125	0.47	-2.7
2,773,518	-		IAI47_13125	0.47	-0.4
2,773,518	-		IAI47_13125	0.47	-0.4
2,773,519	+		IAI47_13125	0.48	-0.7
2,773,519	+		IAI47_13125	0.48	-0.3
2,773,519	+		IAI47_13125	0.48	-1.1
2,773,519	+		IAI47_13125	0.48	+1.6
2,773,519	+		IAI47_13125	0.48	-0.6
2,773,520	-		IAI47_13125	0.48	+1.1
2,773,520	-		IAI47_13125	0.48	-0.9
2,773,520	-		IAI47_13125	0.48	+0.9
2,773,520	-		IAI47_13125	0.48	+0.8
2,773,520	-		IAI47_13125	0.48	+1.6
2,773,520	-		IAI47_13125	0.48	-0.9
2,773,520	-		IAI47_13125	0.48	+0.6
2,773,529	+		IAI47_13125	0.48	+1.0
2,773,529	+		IAI47_13125	0.48	+1.4
2,773,529	+		IAI47_13125	0.48	-0.7
2,773,530	-		IAI47_13125	0.48	+0.3
2,773,530	-		IAI47_13125	0.48	+0.2
2,773,530	-		IAI47_13125	0.48	+0.7
2,773,530	-		IAI47_13125	0.48	-1.8
2,773,591	+		IAI47_13125	0.52	-0.4
2,773,591	+		IAI47_13125	0.52	+1.5
2,773,591	+		IAI47_13125	0.52	+2.7
2,773,592	-		IAI47_13125	0.52	-0.9