Strain Fitness in Pantoea sp. MT58 around IAI47_11950

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,529,021	+		IAI47_11945	0.68	+0.6
2,529,021	+		IAI47_11945	0.68	-0.4
2,529,022	-		IAI47_11945	0.69	-1.5
2,529,050	-		IAI47_11945	0.71	+0.8
2,529,063	+		IAI47_11945	0.72	+3.0
2,529,063	+		IAI47_11945	0.72	+1.9
2,529,064	-		IAI47_11945	0.72	+2.3
2,529,090	+		IAI47_11945	0.74	+0.3
2,529,168	+		IAI47_11945	0.80	-1.5
2,529,168	+		IAI47_11945	0.80	-2.0
2,529,168	+		IAI47_11945	0.80	+0.6
2,529,168	+		IAI47_11945	0.80	-2.7
2,529,169	-		IAI47_11945	0.80	+0.7
2,529,169	-		IAI47_11945	0.80	+0.2
2,529,169	-		IAI47_11945	0.80	+0.0
2,529,169	-		IAI47_11945	0.80	-0.3
2,529,169	-		IAI47_11945	0.80	+0.8
2,529,183	+		IAI47_11945	0.82	+0.8
2,529,253	+		IAI47_11945	0.87	+0.2
2,529,354	+				-0.2
2,529,355	-				+0.7
2,529,377	+				+0.7
2,529,378	-				+0.3
2,529,378	-				+1.8
2,529,378	-				+0.8
2,529,382	+				+0.5
2,529,382	+				-1.3
2,529,383	-				-0.9
2,529,383	-				-0.3
2,529,383	-				-1.3
2,529,397	+				-0.7
2,529,397	+				+0.2
2,529,397	+				+0.9
2,529,398	-				-1.3
2,529,398	-				-0.3
2,529,398	-				-1.8
2,529,409	-				+0.9
2,529,420	+				-1.5
2,529,420	+				-2.8
2,529,420	+				-0.7
2,529,421	-				-0.7
2,529,439	+				-1.5
2,529,439	+				-0.2
2,529,440	-				-1.3
2,529,440	-				+0.8
2,529,440	-				+2.7
2,529,440	-				+0.3
2,529,440	-				+0.2
2,529,458	+				+0.6
2,529,460	+				+0.9
2,529,460	+				-0.9
2,529,460	+				-1.1
2,529,460	+				-0.2
2,529,461	-				-0.0
2,529,461	-				-0.2
2,529,461	-				+0.5
2,529,461	-				-0.4
2,529,471	-				-1.4
2,529,471	-				-0.5
2,529,492	-				+0.7
2,529,521	+				-2.3
2,529,521	+				+0.5
2,529,521	+				+0.5
2,529,521	+				-1.4
2,529,521	+				-0.9
2,529,521	+				-2.7
2,529,532	+				-0.3
2,529,532	+				+0.7
2,529,532	+				-2.1
2,529,533	-				+0.1
2,529,541	+				+1.2
2,529,542	-				+0.9
2,529,544	+				-2.3
2,529,544	+				+1.6
2,529,545	-				-0.1
2,529,561	-				-2.0
2,529,561	-				+0.1
2,529,561	-				-2.0
2,529,576	-				-2.0
2,529,576	-				-1.4
2,529,576	-				-0.8
2,529,578	+				-1.5
2,529,702	-				+0.3
2,529,706	+				-0.3
2,529,706	+				-0.2
2,529,706	+				-0.4
2,529,707	-				+1.5
2,529,707	-				-1.5
2,529,707	-				-0.1
2,529,771	+				-2.1
2,529,771	+				+0.0
2,529,771	+				-2.0
2,529,771	+				-0.9
2,529,772	-				+0.9
2,529,772	-				+0.7
2,529,772	-				-0.9
2,529,772	-				+0.2
2,529,858	+				+3.8
2,529,858	+				+0.5
2,529,875	-				+0.4
2,529,889	+				-2.4
2,529,889	+				-0.9
2,529,890	-				+3.5
2,529,890	-				-2.1
2,529,893	+				-2.3
2,529,893	+				-0.3
2,529,894	-				+3.7
2,529,894	-				+1.1
2,529,894	-				+1.2
2,529,894	-				-0.7
2,529,894	-				+0.6
2,529,894	-				-2.8
2,529,894	-				-0.3
2,529,894	-				-1.8
2,529,896	-				+0.6
2,529,896	-				-0.9
2,529,896	-				+0.1
2,529,896	-				-0.7
2,529,914	+				-0.9
2,529,914	+				-0.7
2,529,914	+				-0.1
2,529,914	+				+0.7
2,529,915	-				+1.3
2,529,915	-				-2.7
2,529,952	+				+1.3
2,529,952	+				-2.2
2,529,952	+				-2.4
2,529,952	+				+1.2
2,529,953	-				+0.3
2,529,953	-				+0.4
2,529,953	-				+1.4
2,529,953	-				-2.1
2,529,953	-				-0.1
2,530,010	+		IAI47_11950	0.15	+1.9
2,530,010	+		IAI47_11950	0.15	+1.2
2,530,011	-		IAI47_11950	0.15	-0.5
2,530,011	-		IAI47_11950	0.15	+2.9
2,530,085	+		IAI47_11950	0.24	-0.4
2,530,085	+		IAI47_11950	0.24	-2.0
2,530,085	+		IAI47_11950	0.24	-0.9
2,530,085	-		IAI47_11950	0.24	-1.1
2,530,086	-		IAI47_11950	0.24	+0.1
2,530,086	-		IAI47_11950	0.24	+1.8
2,530,086	-		IAI47_11950	0.24	-0.4
2,530,086	-		IAI47_11950	0.24	+0.9
2,530,090	+		IAI47_11950	0.24	-2.3
2,530,091	-		IAI47_11950	0.24	-0.7
2,530,115	-		IAI47_11950	0.27	+0.5
2,530,214	+		IAI47_11950	0.39	-1.0
2,530,215	-		IAI47_11950	0.39	+0.5
2,530,356	+		IAI47_11950	0.56	-0.9
2,530,419	+		IAI47_11950	0.64	+0.3
2,530,419	+		IAI47_11950	0.64	-1.5
2,530,419	+		IAI47_11950	0.64	-2.3
2,530,419	+		IAI47_11950	0.64	-0.3
2,530,419	+		IAI47_11950	0.64	+1.2
2,530,419	+		IAI47_11950	0.64	+1.5
2,530,419	+		IAI47_11950	0.64	-1.8
2,530,420	-		IAI47_11950	0.64	-0.3
2,530,440	-		IAI47_11950	0.66	+0.5
2,530,440	-		IAI47_11950	0.66	-0.1
2,530,441	+		IAI47_11950	0.66	-2.4
2,530,441	+		IAI47_11950	0.66	-1.0
2,530,441	+		IAI47_11950	0.66	-0.7
2,530,441	+		IAI47_11950	0.66	-1.8
2,530,441	+		IAI47_11950	0.66	-0.1
2,530,441	+		IAI47_11950	0.66	-0.0
2,530,441	+		IAI47_11950	0.66	-0.3
2,530,441	+		IAI47_11950	0.66	-0.7
2,530,442	-		IAI47_11950	0.66	-1.0
2,530,442	-		IAI47_11950	0.66	-1.7
2,530,442	-		IAI47_11950	0.66	+0.7
2,530,442	-		IAI47_11950	0.66	+1.0
2,530,490	+		IAI47_11950	0.72	-1.5
2,530,698	+				+3.4
2,530,715	+				+0.3
2,530,715	+				-0.1
2,530,715	+				+0.8
2,530,715	+				+0.9
2,530,715	+				-1.5
2,530,715	+				-0.9
2,530,716	-				-2.0
2,530,716	-				-1.1
2,530,787	+				+2.3
2,530,790	+				+0.3
2,530,791	-				-1.3
2,530,791	-				+0.8
2,530,791	-				-2.6
2,530,829	-				+0.6
2,530,881	-				+3.7