Strain Fitness in Pantoea sp. MT58 around IAI47_08945

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,890,538	+				-2.3
1,890,538	+				+0.4
1,890,538	+				+2.0
1,890,538	+				+1.5
1,890,538	+				+1.6
1,890,538	+				+0.5
1,890,538	+				+0.4
1,890,538	+				-0.8
1,890,539	-				+1.3
1,890,539	-				-1.0
1,890,539	-				-1.0
1,890,539	-				-1.9
1,890,539	-				+1.8
1,890,539	-				+0.3
1,890,539	-				-1.3
1,890,539	-				-0.8
1,890,539	-				-2.0
1,890,539	-				+2.0
1,890,539	-				+2.0
1,890,654	+		IAI47_08940	0.11	+0.4
1,890,655	-		IAI47_08940	0.11	+2.0
1,890,690	+		IAI47_08940	0.15	-0.6
1,890,690	+		IAI47_08940	0.15	-0.8
1,890,690	+		IAI47_08940	0.15	-1.3
1,890,691	-		IAI47_08940	0.15	-2.2
1,890,691	-		IAI47_08940	0.15	+0.7
1,890,691	-		IAI47_08940	0.15	+0.9
1,890,691	-		IAI47_08940	0.15	-0.4
1,890,691	-		IAI47_08940	0.15	-2.1
1,890,691	-		IAI47_08940	0.15	-0.6
1,890,692	+		IAI47_08940	0.15	-0.8
1,890,776	+		IAI47_08940	0.24	+2.0
1,890,804	+		IAI47_08940	0.27	-1.8
1,890,805	-		IAI47_08940	0.27	-2.0
1,890,805	-		IAI47_08940	0.27	-0.6
1,890,805	-		IAI47_08940	0.27	-0.6
1,890,843	+		IAI47_08940	0.32	-0.3
1,890,843	+		IAI47_08940	0.32	-0.6
1,890,844	-		IAI47_08940	0.32	+2.0
1,890,844	-		IAI47_08940	0.32	+2.0
1,890,915	+		IAI47_08940	0.40	-1.5
1,890,915	+		IAI47_08940	0.40	+0.6
1,890,921	+		IAI47_08940	0.40	-0.8
1,890,921	+		IAI47_08940	0.40	-1.2
1,890,922	-		IAI47_08940	0.40	+0.0
1,890,922	-		IAI47_08940	0.40	-2.0
1,890,971	+		IAI47_08940	0.46	+0.1
1,890,971	+		IAI47_08940	0.46	+4.8
1,890,971	+		IAI47_08940	0.46	-1.0
1,890,971	+		IAI47_08940	0.46	-1.6
1,890,971	+		IAI47_08940	0.46	+1.4
1,890,972	-		IAI47_08940	0.46	+2.1
1,890,972	-		IAI47_08940	0.46	+1.0
1,890,972	-		IAI47_08940	0.46	-2.9
1,890,972	-		IAI47_08940	0.46	-1.2
1,891,007	+		IAI47_08940	0.50	-1.9
1,891,007	+		IAI47_08940	0.50	-1.2
1,891,008	-		IAI47_08940	0.50	+0.4
1,891,063	-		IAI47_08940	0.56	+1.6
1,891,356	+		IAI47_08940	0.89	-2.9
1,891,357	-		IAI47_08940	0.89	-1.2
1,891,390	+				+1.4
1,891,390	+				-0.3
1,891,391	-				-0.3
1,891,409	+				-0.3
1,891,410	-				+0.6
1,891,425	+				+1.6
1,891,426	-				-1.0
1,891,440	+				+0.5
1,891,441	-				+1.0
1,891,441	-				-1.0
1,891,449	+				-1.8
1,891,449	+				-0.2
1,891,449	+				+1.0
1,891,449	+				+0.7
1,891,449	+				-0.8
1,891,449	+				+2.3
1,891,449	+				-1.3
1,891,449	+				-1.3
1,891,449	+				-2.0
1,891,450	-				-1.2
1,891,450	-				+1.6
1,891,450	-				+0.6
1,891,450	-				-0.1
1,891,450	-				-1.3
1,891,508	+				-1.0
1,891,533	+				-1.7
1,891,534	-				+0.7
1,891,534	-				+0.3
1,891,534	-				+2.3
1,891,534	-				+1.0
1,891,534	-				+1.2
1,891,534	-				+0.4
1,891,534	-				+0.8
1,891,534	-				+3.4
1,892,684	+				+0.0
1,892,685	-				+0.6
1,892,685	-				+1.3
1,892,685	-				+1.4
1,892,686	+				+4.0
1,892,687	-				-2.7
1,892,687	-				-1.7
1,892,713	+				+0.0
1,892,713	+				+0.1
1,892,713	+				+1.0
1,892,713	+				-2.3
1,892,713	+				+1.0
1,892,713	+				-0.3
1,892,714	-				+1.1
1,892,714	-				-2.6
1,892,714	-				+3.4
1,892,714	-				-2.1
1,892,714	-				-2.0
1,892,714	-				-1.3
1,892,715	+				-2.0
1,892,715	+				+0.2
1,892,715	+				-0.6
1,892,715	+				+0.4
1,892,716	-				-0.4
1,892,717	+				-2.2
1,892,717	+				+2.0
1,892,717	+				+1.4
1,892,718	-				-0.1
1,892,718	-				+1.0
1,892,718	-				+1.2
1,892,807	+				+0.0
1,892,808	-				-1.2
1,892,808	-				+4.1
1,892,823	+				-0.6
1,892,824	-				-0.8
1,892,828	+				+0.0
1,892,829	-				-0.6
1,892,868	+				+2.1
1,892,868	+				+2.0
1,892,929	+		IAI47_08950	0.14	-0.2
1,892,929	+		IAI47_08950	0.14	-1.6
1,892,929	+		IAI47_08950	0.14	+2.0
1,892,930	-		IAI47_08950	0.14	-1.3
1,893,001	+		IAI47_08950	0.31	+1.0
1,893,001	+		IAI47_08950	0.31	-0.6
1,893,001	+		IAI47_08950	0.31	+0.4
1,893,001	+		IAI47_08950	0.31	+2.0
1,893,002	-		IAI47_08950	0.32	+0.8
1,893,002	-		IAI47_08950	0.32	-2.0
1,893,002	-		IAI47_08950	0.32	-1.5
1,893,049	+		IAI47_08950	0.43	+0.9
1,893,049	+		IAI47_08950	0.43	+2.0
1,893,049	+		IAI47_08950	0.43	+0.7
1,893,049	+		IAI47_08950	0.43	-1.1
1,893,049	+		IAI47_08950	0.43	+0.4
1,893,049	+		IAI47_08950	0.43	+1.0
1,893,049	+		IAI47_08950	0.43	-0.8
1,893,049	+		IAI47_08950	0.43	+0.4
1,893,049	+		IAI47_08950	0.43	+0.4
1,893,050	-		IAI47_08950	0.43	-2.0
1,893,050	-		IAI47_08950	0.43	+2.1
1,893,050	-		IAI47_08950	0.43	-1.6
1,893,050	-		IAI47_08950	0.43	+1.4
1,893,089	+		IAI47_08950	0.53	-1.5
1,893,089	+		IAI47_08950	0.53	+2.0
1,893,089	+		IAI47_08950	0.53	+0.7
1,893,089	+		IAI47_08950	0.53	-0.3
1,893,090	-		IAI47_08950	0.53	-1.4
1,893,109	+		IAI47_08950	0.58	-1.1
1,893,109	+		IAI47_08950	0.58	-1.3
1,893,109	+		IAI47_08950	0.58	+1.2
1,893,121	-		IAI47_08950	0.61	+2.0
1,893,121	-		IAI47_08950	0.61	-0.8
1,893,221	-		IAI47_08950	0.85	+0.4
1,893,228	+		IAI47_08950	0.87	+1.0
1,893,228	+		IAI47_08950	0.87	+0.5
1,893,228	+		IAI47_08950	0.87	+2.0
1,893,229	-		IAI47_08950	0.87	+0.7
1,893,229	-		IAI47_08950	0.87	+1.0
1,893,336	+		IAI47_08955	0.17	+0.4
1,893,368	+		IAI47_08955	0.28	+2.4
1,893,368	+		IAI47_08955	0.28	+0.0
1,893,368	+		IAI47_08955	0.28	+3.1
1,893,368	+		IAI47_08955	0.28	-2.2
1,893,369	-		IAI47_08955	0.29	-0.6
1,893,369	-		IAI47_08955	0.29	+0.6
1,893,427	+		IAI47_08955	0.49	+3.0
1,893,428	-		IAI47_08955	0.50	+1.4
1,893,467	+		IAI47_08955	0.63	+0.7
1,893,467	+		IAI47_08955	0.63	-1.7
1,893,467	+		IAI47_08955	0.63	+0.4
1,893,467	+		IAI47_08955	0.63	+1.1
1,893,467	+		IAI47_08955	0.63	-1.2
1,893,467	+		IAI47_08955	0.63	-1.3
1,893,467	+		IAI47_08955	0.63	+0.1
1,893,467	+		IAI47_08955	0.63	+0.4
1,893,467	+		IAI47_08955	0.63	-1.8
1,893,467	+		IAI47_08955	0.63	-0.5
1,893,468	-		IAI47_08955	0.64	-0.3
1,893,468	-		IAI47_08955	0.64	+1.6
1,893,468	-		IAI47_08955	0.64	+0.0
1,893,468	-		IAI47_08955	0.64	-0.3
1,893,468	-		IAI47_08955	0.64	-2.6
1,893,468	-		IAI47_08955	0.64	+1.6
1,893,468	-		IAI47_08955	0.64	-1.8
1,893,468	-		IAI47_08955	0.64	-0.4
1,893,468	-		IAI47_08955	0.64	+2.7
1,893,468	-		IAI47_08955	0.64	-1.7
1,893,468	-		IAI47_08955	0.64	-0.0
1,893,468	-		IAI47_08955	0.64	+0.6
1,893,468	-		IAI47_08955	0.64	-1.0