Strain Fitness in Pantoea sp. MT58 around IAI47_07825

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,656,191	+		IAI47_07820	0.68	+0.3
1,656,236	+		IAI47_07820	0.70	+1.3
1,656,237	-		IAI47_07820	0.70	-4.0
1,656,266	+		IAI47_07820	0.71	+0.9
1,656,267	-		IAI47_07820	0.71	+0.5
1,656,267	-		IAI47_07820	0.71	-1.1
1,656,267	-		IAI47_07820	0.71	-1.9
1,656,543	-		IAI47_07820	0.81	+1.3
1,656,629	+		IAI47_07820	0.85	-1.7
1,656,630	-		IAI47_07820	0.85	+0.3
1,656,630	-		IAI47_07820	0.85	-0.9
1,656,633	-		IAI47_07820	0.85	-0.9
1,656,778	+				+0.7
1,656,778	+				-2.3
1,656,779	-				+1.9
1,656,779	-				+3.3
1,656,867	-				-1.2
1,656,867	-				-0.7
1,656,942	+				+1.2
1,656,942	+				-0.4
1,656,943	-				+0.5
1,656,943	-				-1.3
1,656,943	-				+2.5
1,657,016	-				-2.3
1,657,041	+				-0.7
1,657,041	+				-2.3
1,657,042	-				+3.7
1,657,042	-				-1.3
1,657,065	+				+2.9
1,657,065	+				+2.2
1,657,067	+				-0.1
1,657,067	+				+3.1
1,657,068	-				-0.3
1,657,068	-				-1.8
1,657,090	-				-1.9
1,657,098	+				-1.9
1,657,098	+				+1.0
1,657,098	+				-0.3
1,657,141	-				+0.8
1,657,192	+				-1.1
1,657,192	+				+0.5
1,657,193	-				+0.3
1,657,212	-				-1.1
1,657,307	+				+1.5
1,657,308	-				+0.6
1,657,341	+		IAI47_07825	0.11	+1.0
1,657,341	+		IAI47_07825	0.11	+1.9
1,657,341	+		IAI47_07825	0.11	-0.1
1,657,342	-		IAI47_07825	0.11	-1.1
1,657,342	-		IAI47_07825	0.11	-2.0
1,657,342	-		IAI47_07825	0.11	+4.7
1,657,342	-		IAI47_07825	0.11	-0.1
1,657,342	-		IAI47_07825	0.11	+3.2
1,657,342	-		IAI47_07825	0.11	+1.4
1,657,366	+		IAI47_07825	0.13	-1.9
1,657,377	-		IAI47_07825	0.13	+1.4
1,657,424	+		IAI47_07825	0.16	-1.8
1,657,424	+		IAI47_07825	0.16	+0.7
1,657,425	-		IAI47_07825	0.16	-0.3
1,657,434	+		IAI47_07825	0.17	+1.1
1,657,591	+		IAI47_07825	0.27	+0.2
1,657,591	+		IAI47_07825	0.27	+2.7
1,657,669	+		IAI47_07825	0.33	+0.0
1,657,669	+		IAI47_07825	0.33	+1.4
1,657,698	-		IAI47_07825	0.34	-0.8
1,657,726	+		IAI47_07825	0.36	-0.1
1,657,726	+		IAI47_07825	0.36	+0.9
1,657,727	-		IAI47_07825	0.36	-1.4
1,657,727	-		IAI47_07825	0.36	+0.8
1,657,760	+		IAI47_07825	0.39	-1.3
1,657,761	-		IAI47_07825	0.39	-1.1
1,657,761	-		IAI47_07825	0.39	+0.5
1,657,764	+		IAI47_07825	0.39	-0.0
1,657,764	+		IAI47_07825	0.39	+0.2
1,657,764	+		IAI47_07825	0.39	+0.6
1,657,765	-		IAI47_07825	0.39	-0.5
1,657,765	-		IAI47_07825	0.39	-0.7
1,657,765	-		IAI47_07825	0.39	+1.6
1,657,765	-		IAI47_07825	0.39	+1.5
1,657,765	-		IAI47_07825	0.39	+2.1
1,657,791	+		IAI47_07825	0.41	+0.8
1,657,791	+		IAI47_07825	0.41	-3.1
1,657,791	+		IAI47_07825	0.41	-2.6
1,657,791	+		IAI47_07825	0.41	+0.7
1,657,791	+		IAI47_07825	0.41	-0.5
1,657,791	+		IAI47_07825	0.41	-0.8
1,657,791	+		IAI47_07825	0.41	+1.2
1,657,791	+		IAI47_07825	0.41	+0.9
1,657,791	+		IAI47_07825	0.41	+1.8
1,657,792	-		IAI47_07825	0.41	+0.6
1,657,792	-		IAI47_07825	0.41	+0.9
1,657,833	+		IAI47_07825	0.43	-0.1
1,657,833	+		IAI47_07825	0.43	+1.3
1,657,833	+		IAI47_07825	0.43	+1.2
1,657,833	+		IAI47_07825	0.43	-0.7
1,657,833	+		IAI47_07825	0.43	+1.4
1,657,833	+		IAI47_07825	0.43	-1.1
1,657,834	-		IAI47_07825	0.43	-1.4
1,657,834	-		IAI47_07825	0.43	-1.3
1,657,834	-		IAI47_07825	0.43	-0.1
1,657,834	-		IAI47_07825	0.43	+0.7
1,657,834	-		IAI47_07825	0.43	-0.4
1,657,834	-		IAI47_07825	0.43	-2.5
1,657,834	-		IAI47_07825	0.43	+0.4
1,657,916	+		IAI47_07825	0.49	-1.3
1,657,917	-		IAI47_07825	0.49	+0.0
1,657,970	+		IAI47_07825	0.52	-2.3
1,657,970	+		IAI47_07825	0.52	+1.1
1,657,970	+		IAI47_07825	0.52	-1.4
1,657,970	+		IAI47_07825	0.52	+2.8
1,657,971	-		IAI47_07825	0.52	+1.7
1,658,086	+		IAI47_07825	0.60	-0.9
1,658,086	+		IAI47_07825	0.60	-2.1
1,658,086	+		IAI47_07825	0.60	-2.1
1,658,086	+		IAI47_07825	0.60	+1.7
1,658,087	-		IAI47_07825	0.60	-0.2
1,658,087	-		IAI47_07825	0.60	+1.4
1,658,090	+		IAI47_07825	0.60	-0.9
1,658,090	+		IAI47_07825	0.60	+0.5
1,658,090	+		IAI47_07825	0.60	+1.7
1,658,090	+		IAI47_07825	0.60	-0.7
1,658,090	+		IAI47_07825	0.60	-0.2
1,658,234	+		IAI47_07825	0.70	+1.2
1,658,234	+		IAI47_07825	0.70	-0.1
1,658,234	+		IAI47_07825	0.70	-1.7
1,658,234	+		IAI47_07825	0.70	+0.7
1,658,234	+		IAI47_07825	0.70	-0.1
1,658,234	+		IAI47_07825	0.70	-1.1
1,658,235	-		IAI47_07825	0.70	-2.3
1,658,330	+		IAI47_07825	0.76	-0.7
1,658,330	+		IAI47_07825	0.76	+0.2
1,658,330	+		IAI47_07825	0.76	+0.9
1,658,331	-		IAI47_07825	0.76	+0.7
1,658,331	-		IAI47_07825	0.76	-0.1
1,658,331	-		IAI47_07825	0.76	+0.2
1,658,484	+		IAI47_07825	0.86	-2.4
1,658,484	+		IAI47_07825	0.86	-1.8
1,658,528	-		IAI47_07825	0.89	+2.5
1,658,577	+				-0.0
1,658,639	+				+0.3
1,658,640	-				-0.9
1,658,640	-				-0.1
1,658,688	+				+0.3
1,658,688	+				+1.7
1,658,689	-				-2.0
1,658,689	-				-0.1
1,658,807	+		IAI47_07830	0.11	+1.3
1,658,860	-		IAI47_07830	0.16	+1.0
1,659,093	+		IAI47_07830	0.40	+1.6
1,659,093	+		IAI47_07830	0.40	-0.1
1,659,093	+		IAI47_07830	0.40	-1.8
1,659,093	+		IAI47_07830	0.40	+0.3
1,659,094	-		IAI47_07830	0.40	+0.6
1,659,094	-		IAI47_07830	0.40	+2.1
1,659,094	-		IAI47_07830	0.40	-2.0
1,659,094	-		IAI47_07830	0.40	-1.4
1,659,094	-		IAI47_07830	0.40	+0.3
1,659,112	+		IAI47_07830	0.42	+0.8
1,659,113	-		IAI47_07830	0.42	-1.9
1,659,113	-		IAI47_07830	0.42	+0.7
1,659,113	-		IAI47_07830	0.42	+2.1
1,659,136	+		IAI47_07830	0.44	+0.3
1,659,177	+		IAI47_07830	0.49	+0.9
1,659,178	-		IAI47_07830	0.49	+1.4
1,659,178	-		IAI47_07830	0.49	+1.5
1,659,203	-		IAI47_07830	0.51	+0.1
1,659,295	-		IAI47_07830	0.61	-1.1
1,659,295	-		IAI47_07830	0.61	+0.4
1,659,295	-		IAI47_07830	0.61	-0.1
1,659,295	-		IAI47_07830	0.61	-0.3
1,659,295	-		IAI47_07830	0.61	+1.1
1,659,295	-		IAI47_07830	0.61	-0.4
1,659,298	+		IAI47_07830	0.61	-0.2
1,659,298	+		IAI47_07830	0.61	+1.0
1,659,298	+		IAI47_07830	0.61	+1.1
1,659,298	+		IAI47_07830	0.61	+1.2
1,659,298	+		IAI47_07830	0.61	-1.7
1,659,298	+		IAI47_07830	0.61	-1.5
1,659,299	-		IAI47_07830	0.61	+0.4
1,659,299	-		IAI47_07830	0.61	+1.4
1,659,299	-		IAI47_07830	0.61	+0.7
1,659,299	-		IAI47_07830	0.61	-0.0
1,659,427	+		IAI47_07830	0.74	-1.8
1,659,513	+		IAI47_07830	0.83	-0.0
1,659,552	+		IAI47_07830	0.87	-1.9
1,659,568	-		IAI47_07830	0.88	+0.7
1,659,568	-		IAI47_07830	0.88	-0.2
1,659,595	+				+1.5
1,659,595	+				-0.1
1,659,655	+				+1.6
1,659,655	+				-0.3
1,659,655	+				-3.3
1,659,655	+				+0.6
1,659,656	-				+0.4
1,659,656	-				-1.9
1,659,656	-				-1.5
1,659,686	+				+0.7
1,659,686	+				-1.4
1,659,687	-				-2.0