Strain Fitness in Pantoea sp. MT58 around IAI47_07390

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,560,302	+				-0.2
1,560,302	+				-2.3
1,560,303	-				+0.5
1,560,303	-				+0.1
1,560,303	-				+0.3
1,560,317	+				+1.9
1,560,317	+				+1.9
1,560,318	-				-0.3
1,560,332	+				-2.6
1,560,333	-				+3.4
1,560,334	+				+1.4
1,560,334	+				-0.4
1,560,334	+				+2.5
1,560,334	+				+0.3
1,560,334	+				+2.5
1,560,334	+				-2.1
1,560,334	+				+0.5
1,560,334	+				-1.3
1,560,334	+				-1.4
1,560,334	+				+1.3
1,560,334	+				+3.0
1,560,334	+				+0.2
1,560,334	+				+2.2
1,560,334	+				+0.2
1,560,334	+				+1.2
1,560,335	-				-0.1
1,560,335	-				-0.7
1,560,335	-				-0.7
1,560,335	-				+1.2
1,560,335	-				-0.6
1,560,335	-				+0.3
1,560,335	-				-0.7
1,560,335	-				+0.0
1,560,335	-				-0.0
1,560,335	-				-3.2
1,560,335	-				-1.1
1,560,375	-				-0.4
1,560,469	+		IAI47_07385	0.18	+0.4
1,560,469	+		IAI47_07385	0.18	-0.0
1,560,470	-		IAI47_07385	0.18	+1.2
1,560,470	-		IAI47_07385	0.18	-0.9
1,560,470	-		IAI47_07385	0.18	+1.3
1,560,524	+		IAI47_07385	0.23	+0.7
1,560,568	+		IAI47_07385	0.28	-1.0
1,560,569	-		IAI47_07385	0.28	-1.3
1,560,569	-		IAI47_07385	0.28	+0.1
1,560,650	+		IAI47_07385	0.36	+1.0
1,560,650	+		IAI47_07385	0.36	+1.0
1,560,650	+		IAI47_07385	0.36	+1.3
1,560,664	+		IAI47_07385	0.38	-0.9
1,560,687	-		IAI47_07385	0.40	-0.2
1,560,694	+		IAI47_07385	0.41	-2.3
1,560,694	+		IAI47_07385	0.41	+0.9
1,560,694	+		IAI47_07385	0.41	+0.2
1,560,694	+		IAI47_07385	0.41	-2.2
1,560,695	-		IAI47_07385	0.41	-2.7
1,560,695	-		IAI47_07385	0.41	+1.9
1,560,695	-		IAI47_07385	0.41	-1.4
1,560,695	-		IAI47_07385	0.41	-1.1
1,560,695	-		IAI47_07385	0.41	+1.6
1,560,695	-		IAI47_07385	0.41	+3.0
1,560,695	-		IAI47_07385	0.41	-0.4
1,560,695	-		IAI47_07385	0.41	+1.4
1,560,695	-		IAI47_07385	0.41	+3.0
1,560,695	-		IAI47_07385	0.41	+1.2
1,560,695	-		IAI47_07385	0.41	+0.3
1,560,695	-		IAI47_07385	0.41	-0.5
1,560,700	+		IAI47_07385	0.41	-0.1
1,560,700	+		IAI47_07385	0.41	-1.6
1,560,700	+		IAI47_07385	0.41	-1.3
1,560,700	+				+1.9
1,560,700	+		IAI47_07385	0.41	-0.9
1,560,700	+		IAI47_07385	0.41	-0.1
1,560,701	-		IAI47_07385	0.41	+0.3
1,560,701	-		IAI47_07385	0.41	-1.4
1,560,701	-		IAI47_07385	0.41	-0.0
1,560,701	-		IAI47_07385	0.41	+0.9
1,560,701	-		IAI47_07385	0.41	-3.0
1,560,701	-		IAI47_07385	0.41	-3.0
1,560,701	-		IAI47_07385	0.41	-2.1
1,560,701	-		IAI47_07385	0.41	-0.7
1,560,701	-		IAI47_07385	0.41	+1.0
1,560,701	-		IAI47_07385	0.41	+1.7
1,560,701	-		IAI47_07385	0.41	+0.5
1,560,701	-		IAI47_07385	0.41	-0.5
1,560,701	-		IAI47_07385	0.41	+0.2
1,560,748	+		IAI47_07385	0.46	-0.4
1,560,749	-		IAI47_07385	0.46	-1.2
1,560,760	-		IAI47_07385	0.47	-0.4
1,560,760	-		IAI47_07385	0.47	-0.7
1,560,760	-		IAI47_07385	0.47	-2.0
1,560,767	+		IAI47_07385	0.48	+0.7
1,560,768	-		IAI47_07385	0.48	+0.2
1,560,768	-		IAI47_07385	0.48	-0.3
1,560,821	+		IAI47_07385	0.54	-0.8
1,560,863	+		IAI47_07385	0.58	+0.9
1,560,863	+		IAI47_07385	0.58	+3.6
1,560,863	+		IAI47_07385	0.58	+1.3
1,560,863	+		IAI47_07385	0.58	+1.3
1,560,863	+		IAI47_07385	0.58	+1.4
1,560,863	+		IAI47_07385	0.58	-0.9
1,560,864	-		IAI47_07385	0.58	+2.4
1,560,864	-		IAI47_07385	0.58	-0.2
1,560,864	-		IAI47_07385	0.58	+4.6
1,560,864	-		IAI47_07385	0.58	+0.1
1,560,865	+		IAI47_07385	0.58	+1.0
1,560,865	+		IAI47_07385	0.58	+1.9
1,560,865	+		IAI47_07385	0.58	-0.5
1,560,865	+		IAI47_07385	0.58	+2.3
1,560,865	+		IAI47_07385	0.58	-2.8
1,560,865	+		IAI47_07385	0.58	-1.7
1,560,865	+		IAI47_07385	0.58	+1.1
1,560,865	+		IAI47_07385	0.58	+0.7
1,560,866	-		IAI47_07385	0.58	+1.9
1,560,866	-		IAI47_07385	0.58	+1.5
1,560,866	-		IAI47_07385	0.58	+0.8
1,560,866	-		IAI47_07385	0.58	-2.4
1,560,866	-		IAI47_07385	0.58	+0.9
1,560,866	-		IAI47_07385	0.58	+2.4
1,560,866	-		IAI47_07385	0.58	-0.4
1,560,866	-		IAI47_07385	0.58	+0.4
1,560,923	+		IAI47_07385	0.64	+1.2
1,560,935	+		IAI47_07385	0.65	-1.3
1,560,935	+		IAI47_07385	0.65	+1.7
1,560,935	+		IAI47_07385	0.65	-2.8
1,560,936	-		IAI47_07385	0.65	+0.9
1,560,936	-		IAI47_07385	0.65	-0.1
1,561,031	+		IAI47_07385	0.75	-0.1
1,561,032	-		IAI47_07385	0.75	-2.2
1,561,032	-		IAI47_07385	0.75	-1.1
1,561,071	-		IAI47_07385	0.79	+2.6
1,561,071	-		IAI47_07385	0.79	+1.0
1,561,071	-		IAI47_07385	0.79	-2.0
1,561,091	+		IAI47_07385	0.81	+0.6
1,561,120	+		IAI47_07385	0.84	+0.9
1,561,120	+		IAI47_07385	0.84	-2.0
1,561,120	+		IAI47_07385	0.84	+2.2
1,561,120	+		IAI47_07385	0.84	-1.5
1,561,121	-		IAI47_07385	0.84	+0.6
1,561,130	+		IAI47_07385	0.85	+0.3
1,561,252	+				-0.7
1,561,252	+				+0.4
1,561,252	+				+1.2
1,561,252	+				+0.7
1,561,252	+				+0.8
1,561,252	+				+1.9
1,561,253	-				+1.0
1,561,253	-				-0.7
1,561,253	-				-0.5
1,561,253	-				+0.2
1,561,253	-				-0.8
1,561,270	-				-0.4
1,561,270	-				-0.4
1,561,292	+				-0.3
1,561,292	+				+0.2
1,561,292	+				-0.2
1,561,292	+				-0.8
1,561,359	+				+0.2
1,561,360	-				-0.3
1,561,368	+				+1.9
1,561,368	+				+1.2
1,561,368	+				+0.9
1,561,369	-				-0.7
1,561,492	+		IAI47_07390	0.23	-2.0
1,561,493	-		IAI47_07390	0.23	+1.6
1,561,493	-		IAI47_07390	0.23	-0.9
1,561,514	+		IAI47_07390	0.25	-3.0
1,561,514	+		IAI47_07390	0.25	-1.8
1,561,514	+		IAI47_07390	0.25	+0.9
1,561,514	+		IAI47_07390	0.25	+1.3
1,561,515	-		IAI47_07390	0.25	-0.3
1,561,578	-		IAI47_07390	0.33	-1.7
1,561,741	-		IAI47_07390	0.51	-1.9
1,561,809	+		IAI47_07390	0.59	+0.2
1,561,810	-		IAI47_07390	0.59	-2.4
1,561,937	+		IAI47_07390	0.73	-1.4
1,561,937	+		IAI47_07390	0.73	-1.7
1,561,941	+		IAI47_07390	0.74	+1.3
1,561,941	+		IAI47_07390	0.74	+0.3
1,561,941	+		IAI47_07390	0.74	+0.8
1,561,942	-		IAI47_07390	0.74	-1.1
1,562,074	+		IAI47_07390	0.89	-0.9
1,562,075	-		IAI47_07390	0.89	-1.6
1,562,091	+				+0.1
1,562,115	+				+2.3
1,562,115	+				+1.0
1,562,116	-				+1.1
1,562,116	-				-1.3
1,562,116	-				-1.0
1,562,157	+				-2.4
1,562,157	+				-1.7
1,562,159	+				+0.2
1,562,159	+				+2.1
1,562,159	+				-2.3
1,562,160	-				-1.7
1,562,160	-				+2.4
1,562,160	-				-1.9
1,562,288	+		IAI47_07395	0.19	+1.4
1,562,288	+				-0.4
1,562,288	+		IAI47_07395	0.19	-2.1
1,562,289	-		IAI47_07395	0.19	+0.7
1,562,312	-		IAI47_07395	0.24	-1.0
1,562,335	+		IAI47_07395	0.29	-0.7
1,562,335	+		IAI47_07395	0.29	-1.9
1,562,335	+		IAI47_07395	0.29	+2.1
1,562,335	+		IAI47_07395	0.29	+0.5
1,562,335	+		IAI47_07395	0.29	-2.8
1,562,336	-		IAI47_07395	0.29	-1.8
1,562,336	-		IAI47_07395	0.29	-2.0
1,562,338	+		IAI47_07395	0.29	+0.5
1,562,365	+		IAI47_07395	0.35	-1.6
1,562,365	+		IAI47_07395	0.35	+1.1
1,562,366	-		IAI47_07395	0.35	+0.5
1,562,440	+		IAI47_07395	0.52	+0.3
1,562,440	+		IAI47_07395	0.52	-1.3
1,562,440	+		IAI47_07395	0.52	-3.3
1,562,440	+		IAI47_07395	0.52	-0.1
1,562,441	-		IAI47_07395	0.52	-1.7
1,562,441	-		IAI47_07395	0.52	-0.9
1,562,441	-		IAI47_07395	0.52	+1.1
1,562,441	-		IAI47_07395	0.52	+1.9
1,562,441	-		IAI47_07395	0.52	-2.7
1,562,442	-		IAI47_07395	0.52	+1.5
1,562,474	+		IAI47_07395	0.59	-0.2
1,562,623	+				+1.7
1,562,623	+				-2.3
1,562,624	-				-2.7
1,562,624	-				+1.9
1,562,624	-				-2.1
1,562,668	+				-1.1
1,562,668	+				-2.2
1,562,669	-				-1.1
1,562,686	-				-0.8
1,562,686	-				-0.7
1,562,737	+				+0.8
1,562,738	-				+1.9
1,562,878	-		IAI47_07400	0.18	-2.2
1,562,914	-		IAI47_07400	0.20	+0.6
1,562,927	+		IAI47_07400	0.21	-2.3
1,562,927	+		IAI47_07400	0.21	-1.6
1,562,927	+		IAI47_07400	0.21	+0.4
1,562,927	+		IAI47_07400	0.21	-3.1
1,562,927	+		IAI47_07400	0.21	+0.2
1,562,927	+		IAI47_07400	0.21	-1.4
1,562,927	+		IAI47_07400	0.21	+0.8
1,562,927	+		IAI47_07400	0.21	+0.7
1,562,928	-		IAI47_07400	0.21	+1.9
1,562,928	-		IAI47_07400	0.21	-2.3
1,562,928	-		IAI47_07400	0.21	+0.8
1,562,928	-		IAI47_07400	0.21	+0.8
1,562,928	-		IAI47_07400	0.21	+3.4
1,562,928	-		IAI47_07400	0.21	+1.0
1,562,928	-		IAI47_07400	0.21	+0.9
1,562,928	-		IAI47_07400	0.21	+1.6
1,562,931	+		IAI47_07400	0.22	-0.2
1,562,931	+		IAI47_07400	0.22	-0.4
1,562,931	+		IAI47_07400	0.22	+0.1
1,562,932	-		IAI47_07400	0.22	-0.4
1,563,017	-		IAI47_07400	0.28	+1.7