Strain Fitness in Pantoea sp. MT58 around IAI47_05030

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,059,827	+		IAI47_05025	0.80	-0.7
1,059,974	+		IAI47_05025	0.83	+1.5
1,059,975	-		IAI47_05025	0.83	+1.3
1,060,017	+		IAI47_05025	0.84	-0.5
1,060,018	-		IAI47_05025	0.84	+1.8
1,060,027	+		IAI47_05025	0.84	-0.9
1,060,028	-		IAI47_05025	0.84	+2.1
1,060,028	-		IAI47_05025	0.84	+0.5
1,060,028	-		IAI47_05025	0.84	-0.5
1,060,052	-		IAI47_05025	0.85	-0.1
1,060,052	-		IAI47_05025	0.85	-2.0
1,060,125	-		IAI47_05025	0.86	-2.0
1,060,125	-		IAI47_05025	0.86	-2.8
1,060,138	+		IAI47_05025	0.87	-2.5
1,060,138	+		IAI47_05025	0.87	+0.1
1,060,138	+		IAI47_05025	0.87	+0.3
1,060,138	+		IAI47_05025	0.87	-2.3
1,060,139	-		IAI47_05025	0.87	+1.6
1,060,139	-		IAI47_05025	0.87	-2.5
1,060,139	-		IAI47_05025	0.87	-2.0
1,060,139	-		IAI47_05025	0.87	-0.7
1,060,139	-		IAI47_05025	0.87	+0.4
1,060,143	+		IAI47_05025	0.87	-0.4
1,060,143	+		IAI47_05025	0.87	-2.0
1,060,143	+		IAI47_05025	0.87	+0.4
1,060,144	-		IAI47_05025	0.87	+0.0
1,060,144	-		IAI47_05025	0.87	-0.1
1,060,144	-		IAI47_05025	0.87	-0.6
1,060,223	-		IAI47_05025	0.88	-0.5
1,060,267	+		IAI47_05025	0.89	+0.5
1,060,268	-		IAI47_05025	0.89	-0.9
1,060,289	+		IAI47_05025	0.90	+0.9
1,060,289	+		IAI47_05025	0.90	-0.3
1,060,289	+		IAI47_05025	0.90	+0.5
1,060,289	+		IAI47_05025	0.90	+1.1
1,060,289	+		IAI47_05025	0.90	+0.7
1,060,289	+		IAI47_05025	0.90	+0.9
1,060,290	-		IAI47_05025	0.90	-0.4
1,060,290	-		IAI47_05025	0.90	-0.0
1,060,290	-		IAI47_05025	0.90	-1.9
1,060,290	-		IAI47_05025	0.90	+1.4
1,060,290	-		IAI47_05025	0.90	+1.7
1,060,290	-		IAI47_05025	0.90	-1.1
1,060,342	+				-1.5
1,060,342	+				+0.4
1,060,343	-				-0.2
1,060,343	-				+2.6
1,060,343	-				-0.1
1,060,343	-				-0.0
1,060,343	-				+0.3
1,060,343	-				+1.2
1,060,343	-				-1.5
1,060,343	-				+0.2
1,060,356	+				+1.4
1,060,357	-				+1.0
1,060,367	+				-0.7
1,060,368	-				+2.0
1,060,368	-				+0.5
1,060,368	-				-0.4
1,060,402	+				-1.3
1,060,403	-				-3.0
1,060,403	-				+0.8
1,060,598	-				+1.4
1,060,651	+				-1.1
1,060,651	+				-0.2
1,060,652	-				-2.2
1,060,652	-				-2.0
1,060,652	-				-1.9
1,060,652	-				+1.0
1,060,655	+				+0.5
1,060,655	+				+0.9
1,060,655	+				+0.9
1,060,655	+				+0.4
1,060,655	+				+1.2
1,060,655	+				+0.2
1,060,655	+				+2.2
1,060,655	+				-1.1
1,060,656	-				+0.3
1,060,656	-				+1.2
1,060,656	-				-0.9
1,060,656	-				-0.5
1,060,656	-				+1.4
1,060,656	-				-1.7
1,060,677	-				-0.5
1,060,677	-				-0.7
1,060,707	-				+0.9
1,060,707	-				+0.3
1,060,707	-				+0.8
1,060,739	+				-0.4
1,060,739	+				+1.6
1,060,739	+				-0.9
1,060,739	+				-0.1
1,060,739	+				+0.7
1,060,739	+				-0.5
1,060,740	-				+0.3
1,060,740	-				-1.5
1,060,740	-				+1.8
1,060,740	-				-0.0
1,060,740	-				+0.5
1,060,740	-				-1.5
1,060,740	-				-0.2
1,060,768	+				-0.1
1,060,769	-				-1.1
1,060,769	-				+1.0
1,060,769	-				-3.0
1,060,769	-				-1.8
1,060,793	+				-2.1
1,060,794	-				+1.4
1,060,813	+				+1.5
1,060,814	-				-1.3
1,060,814	-				+1.1
1,060,916	-				-1.2
1,061,033	+		IAI47_05030	0.10	+1.9
1,061,033	+		IAI47_05030	0.10	+0.9
1,061,034	-		IAI47_05030	0.10	+2.7
1,061,054	+		IAI47_05030	0.11	-1.6
1,061,055	-		IAI47_05030	0.11	+0.2
1,061,143	+		IAI47_05030	0.15	-0.2
1,061,144	-		IAI47_05030	0.15	-2.1
1,061,144	-		IAI47_05030	0.15	+2.6
1,061,175	+		IAI47_05030	0.16	-2.1
1,061,175	+		IAI47_05030	0.16	+1.4
1,061,175	+		IAI47_05030	0.16	-1.5
1,061,175	+		IAI47_05030	0.16	-1.6
1,061,185	+		IAI47_05030	0.17	+0.7
1,061,220	+		IAI47_05030	0.18	+0.5
1,061,221	-		IAI47_05030	0.18	-0.5
1,061,221	-		IAI47_05030	0.18	+1.7
1,061,221	-		IAI47_05030	0.18	-2.9
1,061,285	+		IAI47_05030	0.21	+1.2
1,061,285	+		IAI47_05030	0.21	+0.6
1,061,285	+		IAI47_05030	0.21	+1.2
1,061,286	-		IAI47_05030	0.21	+0.5
1,061,286	-		IAI47_05030	0.21	-1.3
1,061,286	-		IAI47_05030	0.21	+0.5
1,061,290	+		IAI47_05030	0.21	+0.1
1,061,467	+		IAI47_05030	0.29	+1.5
1,061,467	+		IAI47_05030	0.29	-1.5
1,061,467	+		IAI47_05030	0.29	+1.5
1,061,468	-		IAI47_05030	0.29	-0.6
1,061,595	+		IAI47_05030	0.34	+2.6
1,061,681	-		IAI47_05030	0.38	+1.0
1,061,753	+		IAI47_05030	0.41	-0.6
1,061,753	+		IAI47_05030	0.41	-0.1
1,061,753	+		IAI47_05030	0.41	-0.1
1,061,753	+		IAI47_05030	0.41	-1.7
1,061,753	+		IAI47_05030	0.41	+0.7
1,061,754	-		IAI47_05030	0.41	-0.1
1,061,754	-		IAI47_05030	0.41	-2.8
1,061,754	-		IAI47_05030	0.41	-2.1
1,061,838	+		IAI47_05030	0.44	-0.6
1,061,839	-		IAI47_05030	0.45	-1.7
1,061,849	-		IAI47_05030	0.45	+2.7
1,061,849	-		IAI47_05030	0.45	+1.5
1,061,849	-		IAI47_05030	0.45	+1.5
1,061,853	-		IAI47_05030	0.45	-0.5
1,061,988	+		IAI47_05030	0.51	+0.1
1,062,012	+		IAI47_05030	0.52	+0.4
1,062,013	-		IAI47_05030	0.52	-1.5
1,062,079	-		IAI47_05030	0.55	+0.7
1,062,139	+		IAI47_05030	0.57	+0.6
1,062,139	+		IAI47_05030	0.57	-0.7
1,062,161	+		IAI47_05030	0.58	+2.3
1,062,161	+		IAI47_05030	0.58	+2.0
1,062,161	+		IAI47_05030	0.58	-0.9
1,062,161	+		IAI47_05030	0.58	-1.3
1,062,162	-		IAI47_05030	0.58	+1.0
1,062,162	-		IAI47_05030	0.58	+0.6
1,062,162	-		IAI47_05030	0.58	-1.8
1,062,163	+		IAI47_05030	0.58	+0.7
1,062,163	+		IAI47_05030	0.58	+0.9
1,062,163	+		IAI47_05030	0.58	-1.0
1,062,164	-		IAI47_05030	0.58	-0.8
1,062,164	-		IAI47_05030	0.58	+0.9
1,062,164	-		IAI47_05030	0.58	-0.1
1,062,164	-		IAI47_05030	0.58	-2.0
1,062,312	+		IAI47_05030	0.65	+2.2
1,062,312	+		IAI47_05030	0.65	+2.3
1,062,312	+		IAI47_05030	0.65	-1.5
1,062,313	-		IAI47_05030	0.65	-0.1
1,062,313	-		IAI47_05030	0.65	+0.5
1,062,313	-		IAI47_05030	0.65	-1.1
1,062,353	+		IAI47_05030	0.66	+1.5
1,062,353	+		IAI47_05030	0.66	+2.7
1,062,353	+		IAI47_05030	0.66	-2.2
1,062,354	-		IAI47_05030	0.67	-0.5
1,062,354	-		IAI47_05030	0.67	+1.6
1,062,354	-		IAI47_05030	0.67	-0.5
1,062,354	-		IAI47_05030	0.67	+2.1
1,062,354	-		IAI47_05030	0.67	-1.1
1,062,354	-		IAI47_05030	0.67	+1.3
1,062,354	-		IAI47_05030	0.67	+0.7
1,062,396	-		IAI47_05030	0.68	-0.0
1,062,396	-		IAI47_05030	0.68	+0.5
1,062,487	+		IAI47_05030	0.72	-1.3
1,062,488	-		IAI47_05030	0.72	-2.3
1,062,567	+		IAI47_05030	0.76	-3.1
1,062,567	+		IAI47_05030	0.76	-3.0
1,062,567	+		IAI47_05030	0.76	-0.0
1,062,567	+		IAI47_05030	0.76	+0.3
1,062,567	+		IAI47_05030	0.76	+1.1
1,062,568	-		IAI47_05030	0.76	+1.5
1,062,568	-		IAI47_05030	0.76	+1.9
1,062,568	-		IAI47_05030	0.76	+3.7
1,062,568	-		IAI47_05030	0.76	-0.5
1,062,568	-		IAI47_05030	0.76	+0.9
1,062,606	+		IAI47_05030	0.77	-0.5
1,062,606	+		IAI47_05030	0.77	+0.4
1,062,606	+		IAI47_05030	0.77	+0.6
1,062,606	+		IAI47_05030	0.77	+0.9
1,062,606	+		IAI47_05030	0.77	+0.4
1,062,606	+		IAI47_05030	0.77	-0.9
1,062,606	+		IAI47_05030	0.77	-1.0
1,062,607	-		IAI47_05030	0.77	-1.1
1,062,607	-		IAI47_05030	0.77	+1.9
1,062,607	-		IAI47_05030	0.77	-0.1
1,062,646	+		IAI47_05030	0.79	+0.2
1,062,646	+		IAI47_05030	0.79	-0.9
1,062,646	+		IAI47_05030	0.79	-1.9
1,062,646	+		IAI47_05030	0.79	+0.9
1,062,696	+		IAI47_05030	0.81	+2.6
1,062,707	+		IAI47_05030	0.82	+3.9
1,062,834	+		IAI47_05030	0.87	+1.8
1,062,864	+		IAI47_05030	0.88	-2.0
1,062,864	+		IAI47_05030	0.88	+2.5
1,062,864	+		IAI47_05030	0.88	+0.6
1,062,864	+		IAI47_05030	0.88	+1.0
1,062,864	+		IAI47_05030	0.88	-0.4
1,062,864	+		IAI47_05030	0.88	+1.3
1,062,864	+		IAI47_05030	0.88	+1.0
1,062,865	-		IAI47_05030	0.88	+5.4
1,062,865	-		IAI47_05030	0.88	+0.7
1,062,865	-		IAI47_05030	0.88	+1.0
1,062,938	-				+0.5
1,062,940	+				-0.5
1,062,940	+				-2.6
1,062,940	+				-0.6
1,062,940	+				+0.6
1,062,940	+				+1.7
1,062,940	+				-1.1
1,062,941	-				-0.9
1,062,941	-				-0.5
1,062,941	-				+0.8
1,062,941	-				+0.9
1,063,073	+				-0.5
1,063,074	-				-0.4
1,063,074	-				-0.1
1,063,087	-				-2.5
1,063,087	-				+0.5
1,063,157	-				+0.7
1,063,157	-				-1.7
1,063,160	+				+1.4
1,063,160	+				-0.6
1,063,160	+				+0.1
1,063,160	+				+1.7
1,063,160	+				+0.3
1,063,160	+				-0.9
1,063,160	+				-1.8
1,063,160	+				-3.2
1,063,160	+				-0.9
1,063,160	+				-0.5
1,063,161	-				-2.3
1,063,161	-				-0.2
1,063,161	-				-0.5
1,063,161	-				-2.4
1,063,161	-				-1.1
1,063,161	-				+0.3
1,063,161	-				-1.6
1,063,240	+				-1.2
1,063,240	+				+0.9
1,063,242	+				+0.3
1,063,243	-				-0.9
1,063,260	-				-1.5
1,063,335	-				+3.2
1,063,376	+		IAI47_05035	0.15	+0.9
1,063,380	+		IAI47_05035	0.16	+0.3
1,063,381	-		IAI47_05035	0.16	+1.3
1,063,381	-		IAI47_05035	0.16	+1.9
1,063,381	-		IAI47_05035	0.16	+0.3
1,063,381	-		IAI47_05035	0.16	+0.9
1,063,381	-		IAI47_05035	0.16	-1.1
1,063,381	-		IAI47_05035	0.16	-0.5
1,063,381	-		IAI47_05035	0.16	-1.8
1,063,381	-				+0.9
1,063,461	+				+0.9
1,063,461	+		IAI47_05035	0.35	-0.7
1,063,531	+		IAI47_05035	0.51	+0.1
1,063,629	+		IAI47_05035	0.74	-0.5
1,063,702	-				+0.9
1,063,733	+				-0.2
1,063,761	+				+1.0
1,063,762	-				+0.2
1,063,762	-				-2.3
1,063,786	+				+1.3
1,063,810	-				+1.8
1,063,828	+				-0.1
1,063,828	+				+1.9
1,063,828	+				-0.7
1,063,828	+				-0.3
1,063,829	-				-1.7
1,063,829	-				+4.6
1,063,829	-				-1.8
1,063,829	-				-0.7
1,063,829	-				-2.8
1,063,834	-				+0.9
1,063,834	-				+2.2
1,063,858	-				-2.1
1,063,881	+				+3.4
1,063,881	+				+2.2
1,063,881	+				+1.0
1,063,882	-				+0.9
1,063,882	-				-1.2
1,063,882	-				-1.6
1,063,882	-				+0.1
1,063,906	+				+0.6
1,063,906	+				+0.9
1,063,907	-				-0.7
1,063,925	+				-2.9
1,063,925	+				-0.8
1,063,925	+				-3.3
1,063,926	-				+1.5
1,063,926	-				-2.4
1,063,926	-				+0.8
1,063,926	-				-2.5
1,063,928	+				-0.1
1,063,928	+				-2.1
1,063,928	+				+0.9
1,063,928	+				-1.5
1,063,928	+				+0.0
1,063,928	+				-1.5
1,063,928	+				+0.4
1,063,929	-				+2.2
1,063,929	-				+1.7
1,063,929	-				+1.2
1,063,929	-				-0.9
1,063,996	+				+2.5
1,064,091	+		IAI47_05040	0.14	-0.5
1,064,091	+		IAI47_05040	0.14	+2.6
1,064,091	+		IAI47_05040	0.14	+0.2
1,064,091	+		IAI47_05040	0.14	-2.7
1,064,092	-		IAI47_05040	0.14	-1.3
1,064,092	-		IAI47_05040	0.14	-0.1
1,064,092	-		IAI47_05040	0.14	+1.3
1,064,098	-		IAI47_05040	0.14	-0.7
1,064,098	-		IAI47_05040	0.14	+2.2