Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4194

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4193 and Ga0059261_4194 are separated by 11 nucleotidesGa0059261_4194 and Ga0059261_4195 overlap by 4 nucleotidesGa0059261_4195 and Ga0059261_4196 overlap by 4 nucleotides Ga0059261_4193: Ga0059261_4193 - hypothetical protein, at 4,343,841 to 4,345,427 _4193 Ga0059261_4194: Ga0059261_4194 - Type II secretory pathway, component ExeA (predicted ATPase), at 4,345,439 to 4,346,545 _4194 Ga0059261_4195: Ga0059261_4195 - polysaccharide deacetylase family protein, PEP-CTERM locus subfamily, at 4,346,542 to 4,347,384 _4195 Ga0059261_4196: Ga0059261_4196 - FemAB-related protein, PEP-CTERM system-associated, at 4,347,381 to 4,348,454 _4196 Position (kb) 4345 4346 4347Strain fitness (log2 ratio) -1 0 1 2at 4344.513 kb on + strand, within Ga0059261_4193at 4344.514 kb on - strand, within Ga0059261_4193at 4344.514 kb on - strand, within Ga0059261_4193at 4344.514 kb on - strand, within Ga0059261_4193at 4344.514 kb on - strand, within Ga0059261_4193at 4344.514 kb on - strand, within Ga0059261_4193at 4344.514 kb on - strand, within Ga0059261_4193at 4344.514 kb on - strand, within Ga0059261_4193at 4344.514 kb on - strand, within Ga0059261_4193at 4344.702 kb on + strand, within Ga0059261_4193at 4344.702 kb on + strand, within Ga0059261_4193at 4344.702 kb on + strand, within Ga0059261_4193at 4344.703 kb on - strand, within Ga0059261_4193at 4344.703 kb on - strand, within Ga0059261_4193at 4344.741 kb on + strand, within Ga0059261_4193at 4344.741 kb on + strand, within Ga0059261_4193at 4344.741 kb on + strand, within Ga0059261_4193at 4344.741 kb on + strand, within Ga0059261_4193at 4344.741 kb on + strand, within Ga0059261_4193at 4344.741 kb on + strand, within Ga0059261_4193at 4344.741 kb on + strand, within Ga0059261_4193at 4344.741 kb on + strand, within Ga0059261_4193at 4344.741 kb on + strand, within Ga0059261_4193at 4344.741 kb on + strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.742 kb on - strand, within Ga0059261_4193at 4344.789 kb on + strand, within Ga0059261_4193at 4344.790 kb on - strand, within Ga0059261_4193at 4344.804 kb on + strand, within Ga0059261_4193at 4344.804 kb on + strand, within Ga0059261_4193at 4344.804 kb on + strand, within Ga0059261_4193at 4344.804 kb on + strandat 4344.804 kb on + strand, within Ga0059261_4193at 4344.804 kb on + strand, within Ga0059261_4193at 4344.804 kb on + strand, within Ga0059261_4193at 4344.804 kb on + strand, within Ga0059261_4193at 4344.804 kb on + strand, within Ga0059261_4193at 4344.804 kb on + strand, within Ga0059261_4193at 4344.804 kb on + strand, within Ga0059261_4193at 4344.804 kb on + strand, within Ga0059261_4193at 4344.805 kb on - strand, within Ga0059261_4193at 4344.805 kb on - strand, within Ga0059261_4193at 4344.805 kb on - strand, within Ga0059261_4193at 4344.805 kb on - strand, within Ga0059261_4193at 4344.805 kb on - strand, within Ga0059261_4193at 4344.805 kb on - strand, within Ga0059261_4193at 4344.805 kb on - strand, within Ga0059261_4193at 4344.805 kb on - strand, within Ga0059261_4193at 4344.806 kb on + strand, within Ga0059261_4193at 4344.807 kb on - strand, within Ga0059261_4193at 4344.861 kb on + strand, within Ga0059261_4193at 4344.861 kb on + strand, within Ga0059261_4193at 4344.861 kb on + strand, within Ga0059261_4193at 4344.861 kb on + strand, within Ga0059261_4193at 4344.861 kb on + strand, within Ga0059261_4193at 4344.862 kb on - strand, within Ga0059261_4193at 4344.862 kb on - strand, within Ga0059261_4193at 4344.862 kb on - strand, within Ga0059261_4193at 4344.862 kb on - strand, within Ga0059261_4193at 4345.042 kb on - strand, within Ga0059261_4193at 4345.042 kb on - strand, within Ga0059261_4193at 4345.113 kb on + strand, within Ga0059261_4193at 4345.113 kb on + strand, within Ga0059261_4193at 4345.113 kb on + strand, within Ga0059261_4193at 4345.114 kb on - strand, within Ga0059261_4193at 4345.128 kb on + strand, within Ga0059261_4193at 4345.128 kb on + strand, within Ga0059261_4193at 4345.180 kb on - strand, within Ga0059261_4193at 4345.180 kb on - strand, within Ga0059261_4193at 4345.180 kb on - strand, within Ga0059261_4193at 4345.180 kb on - strand, within Ga0059261_4193at 4345.239 kb on + strand, within Ga0059261_4193at 4345.239 kb on + strand, within Ga0059261_4193at 4345.240 kb on - strand, within Ga0059261_4193at 4345.240 kb on - strand, within Ga0059261_4193at 4345.248 kb on + strand, within Ga0059261_4193at 4345.248 kb on + strand, within Ga0059261_4193at 4345.248 kb on + strand, within Ga0059261_4193at 4345.249 kb on - strand, within Ga0059261_4193at 4345.249 kb on - strand, within Ga0059261_4193at 4345.251 kb on + strand, within Ga0059261_4193at 4345.251 kb on + strand, within Ga0059261_4193at 4345.251 kb on + strand, within Ga0059261_4193at 4345.251 kb on + strand, within Ga0059261_4193at 4345.252 kb on - strand, within Ga0059261_4193at 4345.252 kb on - strand, within Ga0059261_4193at 4345.308 kb on + strandat 4345.308 kb on + strandat 4345.308 kb on + strandat 4345.308 kb on + strandat 4345.308 kb on + strandat 4345.308 kb on + strandat 4345.309 kb on - strandat 4345.309 kb on - strandat 4345.309 kb on - strandat 4345.309 kb on - strandat 4345.311 kb on + strandat 4345.311 kb on + strandat 4345.311 kb on + strandat 4345.312 kb on - strandat 4345.312 kb on - strandat 4345.316 kb on + strandat 4345.316 kb on + strandat 4345.317 kb on - strandat 4345.385 kb on + strandat 4345.385 kb on + strandat 4345.385 kb on + strandat 4345.385 kb on + strandat 4345.385 kb on + strandat 4345.386 kb on - strandat 4345.386 kb on - strandat 4345.386 kb on - strandat 4345.442 kb on + strandat 4345.442 kb on + strandat 4345.442 kb on + strandat 4345.443 kb on - strandat 4345.443 kb on - strandat 4345.454 kb on + strandat 4345.454 kb on + strandat 4345.539 kb on - strandat 4345.539 kb on - strandat 4345.539 kb on - strandat 4345.732 kb on + strand, within Ga0059261_4194at 4345.732 kb on + strand, within Ga0059261_4194at 4345.733 kb on - strand, within Ga0059261_4194at 4345.870 kb on + strand, within Ga0059261_4194at 4345.870 kb on + strand, within Ga0059261_4194at 4345.870 kb on + strand, within Ga0059261_4194at 4345.870 kb on + strand, within Ga0059261_4194at 4345.870 kb on + strand, within Ga0059261_4194at 4345.870 kb on + strandat 4345.870 kb on + strand, within Ga0059261_4194at 4345.871 kb on - strand, within Ga0059261_4194at 4345.871 kb on - strand, within Ga0059261_4194at 4345.871 kb on - strand, within Ga0059261_4194at 4345.871 kb on - strand, within Ga0059261_4194at 4345.871 kb on - strand, within Ga0059261_4194at 4346.036 kb on + strand, within Ga0059261_4194at 4346.037 kb on - strand, within Ga0059261_4194at 4346.037 kb on - strand, within Ga0059261_4194at 4346.037 kb on - strand, within Ga0059261_4194at 4346.037 kb on - strand, within Ga0059261_4194at 4346.037 kb on - strand, within Ga0059261_4194at 4346.037 kb on - strand, within Ga0059261_4194at 4346.507 kb on - strandat 4346.606 kb on + strandat 4346.607 kb on - strandat 4346.607 kb on - strandat 4346.734 kb on + strand, within Ga0059261_4195at 4346.734 kb on + strand, within Ga0059261_4195at 4346.735 kb on - strand, within Ga0059261_4195at 4346.735 kb on - strand, within Ga0059261_4195at 4346.754 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.965 kb on + strand, within Ga0059261_4195at 4346.966 kb on - strand, within Ga0059261_4195at 4346.966 kb on - strand, within Ga0059261_4195at 4346.971 kb on + strand, within Ga0059261_4195at 4346.971 kb on + strand, within Ga0059261_4195at 4346.971 kb on + strand, within Ga0059261_4195at 4346.971 kb on + strand, within Ga0059261_4195at 4346.971 kb on + strand, within Ga0059261_4195at 4346.972 kb on - strand, within Ga0059261_4195at 4346.972 kb on - strand, within Ga0059261_4195at 4346.972 kb on - strand, within Ga0059261_4195at 4346.972 kb on - strand, within Ga0059261_4195at 4347.007 kb on + strand, within Ga0059261_4195at 4347.008 kb on - strand, within Ga0059261_4195at 4347.008 kb on - strand, within Ga0059261_4195at 4347.068 kb on - strand, within Ga0059261_4195at 4347.155 kb on - strand, within Ga0059261_4195at 4347.155 kb on - strand, within Ga0059261_4195at 4347.155 kb on - strand, within Ga0059261_4195at 4347.202 kb on + strand, within Ga0059261_4195at 4347.202 kb on + strand, within Ga0059261_4195at 4347.203 kb on - strand, within Ga0059261_4195at 4347.203 kb on - strand, within Ga0059261_4195at 4347.203 kb on - strand, within Ga0059261_4195at 4347.277 kb on + strand, within Ga0059261_4195at 4347.277 kb on + strand, within Ga0059261_4195at 4347.277 kb on + strand, within Ga0059261_4195

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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4,344,513 + Ga0059261_4193 0.42 +1.1
4,344,514 - Ga0059261_4193 0.42 +0.8
4,344,514 - Ga0059261_4193 0.42 +1.5
4,344,514 - Ga0059261_4193 0.42 +1.1
4,344,514 - Ga0059261_4193 0.42 +0.1
4,344,514 - Ga0059261_4193 0.42 +0.5
4,344,514 - Ga0059261_4193 0.42 +0.0
4,344,514 - Ga0059261_4193 0.42 +0.2
4,344,514 - Ga0059261_4193 0.42 +0.3
4,344,702 + Ga0059261_4193 0.54 +1.0
4,344,702 + Ga0059261_4193 0.54 +0.5
4,344,702 + Ga0059261_4193 0.54 +0.5
4,344,703 - Ga0059261_4193 0.54 +0.5
4,344,703 - Ga0059261_4193 0.54 +0.7
4,344,741 + Ga0059261_4193 0.57 +0.1
4,344,741 + Ga0059261_4193 0.57 +0.1
4,344,741 + Ga0059261_4193 0.57 +0.3
4,344,741 + Ga0059261_4193 0.57 +0.7
4,344,741 + Ga0059261_4193 0.57 +0.4
4,344,741 + Ga0059261_4193 0.57 +0.7
4,344,741 + Ga0059261_4193 0.57 +0.9
4,344,741 + Ga0059261_4193 0.57 +0.5
4,344,741 + Ga0059261_4193 0.57 -0.0
4,344,741 + Ga0059261_4193 0.57 +0.2
4,344,742 - Ga0059261_4193 0.57 +0.5
4,344,742 - Ga0059261_4193 0.57 -0.0
4,344,742 - Ga0059261_4193 0.57 +0.8
4,344,742 - Ga0059261_4193 0.57 +0.7
4,344,742 - Ga0059261_4193 0.57 +0.2
4,344,742 - Ga0059261_4193 0.57 +1.2
4,344,742 - Ga0059261_4193 0.57 +0.3
4,344,742 - Ga0059261_4193 0.57 +0.9
4,344,742 - Ga0059261_4193 0.57 +0.4
4,344,742 - Ga0059261_4193 0.57 +0.2
4,344,742 - Ga0059261_4193 0.57 +0.4
4,344,742 - Ga0059261_4193 0.57 +0.5
4,344,789 + Ga0059261_4193 0.60 +1.0
4,344,790 - Ga0059261_4193 0.60 +0.1
4,344,804 + Ga0059261_4193 0.61 +0.5
4,344,804 + Ga0059261_4193 0.61 +0.6
4,344,804 + Ga0059261_4193 0.61 +0.9
4,344,804 + +1.4
4,344,804 + Ga0059261_4193 0.61 -0.4
4,344,804 + Ga0059261_4193 0.61 +0.1
4,344,804 + Ga0059261_4193 0.61 +0.1
4,344,804 + Ga0059261_4193 0.61 +1.2
4,344,804 + Ga0059261_4193 0.61 +0.8
4,344,804 + Ga0059261_4193 0.61 +1.3
4,344,804 + Ga0059261_4193 0.61 -0.4
4,344,804 + Ga0059261_4193 0.61 +0.1
4,344,805 - Ga0059261_4193 0.61 -0.2
4,344,805 - Ga0059261_4193 0.61 +0.6
4,344,805 - Ga0059261_4193 0.61 +0.7
4,344,805 - Ga0059261_4193 0.61 -0.8
4,344,805 - Ga0059261_4193 0.61 +1.0
4,344,805 - Ga0059261_4193 0.61 +1.1
4,344,805 - Ga0059261_4193 0.61 -0.2
4,344,805 - Ga0059261_4193 0.61 +1.0
4,344,806 + Ga0059261_4193 0.61 +0.5
4,344,807 - Ga0059261_4193 0.61 +0.8
4,344,861 + Ga0059261_4193 0.64 -0.2
4,344,861 + Ga0059261_4193 0.64 +0.2
4,344,861 + Ga0059261_4193 0.64 +0.7
4,344,861 + Ga0059261_4193 0.64 -0.2
4,344,861 + Ga0059261_4193 0.64 +0.5
4,344,862 - Ga0059261_4193 0.64 -0.4
4,344,862 - Ga0059261_4193 0.64 +1.8
4,344,862 - Ga0059261_4193 0.64 +0.6
4,344,862 - Ga0059261_4193 0.64 -0.3
4,345,042 - Ga0059261_4193 0.76 +0.0
4,345,042 - Ga0059261_4193 0.76 -0.3
4,345,113 + Ga0059261_4193 0.80 +0.1
4,345,113 + Ga0059261_4193 0.80 +0.4
4,345,113 + Ga0059261_4193 0.80 -0.2
4,345,114 - Ga0059261_4193 0.80 +0.1
4,345,128 + Ga0059261_4193 0.81 +0.5
4,345,128 + Ga0059261_4193 0.81 -0.2
4,345,180 - Ga0059261_4193 0.84 -0.1
4,345,180 - Ga0059261_4193 0.84 +1.0
4,345,180 - Ga0059261_4193 0.84 +0.1
4,345,180 - Ga0059261_4193 0.84 +0.7
4,345,239 + Ga0059261_4193 0.88 -0.9
4,345,239 + Ga0059261_4193 0.88 +0.6
4,345,240 - Ga0059261_4193 0.88 +0.5
4,345,240 - Ga0059261_4193 0.88 +1.0
4,345,248 + Ga0059261_4193 0.89 +1.0
4,345,248 + Ga0059261_4193 0.89 +0.7
4,345,248 + Ga0059261_4193 0.89 -0.3
4,345,249 - Ga0059261_4193 0.89 -0.9
4,345,249 - Ga0059261_4193 0.89 +1.3
4,345,251 + Ga0059261_4193 0.89 +0.6
4,345,251 + Ga0059261_4193 0.89 +0.9
4,345,251 + Ga0059261_4193 0.89 +0.6
4,345,251 + Ga0059261_4193 0.89 +0.4
4,345,252 - Ga0059261_4193 0.89 +0.8
4,345,252 - Ga0059261_4193 0.89 +0.8
4,345,308 + +1.2
4,345,308 + +1.6
4,345,308 + +0.5
4,345,308 + +0.5
4,345,308 + +1.4
4,345,308 + +0.5
4,345,309 - +0.4
4,345,309 - +0.7
4,345,309 - +0.4
4,345,309 - +0.7
4,345,311 + +1.2
4,345,311 + +0.4
4,345,311 + +0.1
4,345,312 - +0.1
4,345,312 - +0.3
4,345,316 + -0.1
4,345,316 + +0.0
4,345,317 - +0.5
4,345,385 + +0.5
4,345,385 + +0.6
4,345,385 + +2.5
4,345,385 + +0.1
4,345,385 + +1.3
4,345,386 - +0.6
4,345,386 - +0.6
4,345,386 - +0.7
4,345,442 + +1.1
4,345,442 + +0.3
4,345,442 + +1.0
4,345,443 - +0.3
4,345,443 - +0.5
4,345,454 + +1.2
4,345,454 + +0.1
4,345,539 - +0.4
4,345,539 - +1.1
4,345,539 - +0.5
4,345,732 + Ga0059261_4194 0.26 +0.2
4,345,732 + Ga0059261_4194 0.26 +0.3
4,345,733 - Ga0059261_4194 0.27 +0.7
4,345,870 + Ga0059261_4194 0.39 -0.1
4,345,870 + Ga0059261_4194 0.39 +0.4
4,345,870 + Ga0059261_4194 0.39 +0.8
4,345,870 + Ga0059261_4194 0.39 +0.4
4,345,870 + Ga0059261_4194 0.39 +0.7
4,345,870 + +1.4
4,345,870 + Ga0059261_4194 0.39 -0.5
4,345,871 - Ga0059261_4194 0.39 +0.4
4,345,871 - Ga0059261_4194 0.39 +0.4
4,345,871 - Ga0059261_4194 0.39 +0.7
4,345,871 - Ga0059261_4194 0.39 +0.0
4,345,871 - Ga0059261_4194 0.39 -0.2
4,346,036 + Ga0059261_4194 0.54 +0.4
4,346,037 - Ga0059261_4194 0.54 +1.7
4,346,037 - Ga0059261_4194 0.54 +0.5
4,346,037 - Ga0059261_4194 0.54 +0.6
4,346,037 - Ga0059261_4194 0.54 -0.5
4,346,037 - Ga0059261_4194 0.54 +0.8
4,346,037 - Ga0059261_4194 0.54 -0.2
4,346,507 - +0.4
4,346,606 + +1.6
4,346,607 - +0.5
4,346,607 - +0.4
4,346,734 + Ga0059261_4195 0.23 +0.4
4,346,734 + Ga0059261_4195 0.23 +0.1
4,346,735 - Ga0059261_4195 0.23 +0.2
4,346,735 - Ga0059261_4195 0.23 -1.0
4,346,754 + Ga0059261_4195 0.25 -0.2
4,346,965 + Ga0059261_4195 0.50 +0.6
4,346,965 + Ga0059261_4195 0.50 +0.8
4,346,965 + Ga0059261_4195 0.50 -0.4
4,346,965 + Ga0059261_4195 0.50 -0.3
4,346,965 + Ga0059261_4195 0.50 +0.7
4,346,965 + Ga0059261_4195 0.50 +0.8
4,346,966 - Ga0059261_4195 0.50 +0.6
4,346,966 - Ga0059261_4195 0.50 -0.2
4,346,971 + Ga0059261_4195 0.51 +0.7
4,346,971 + Ga0059261_4195 0.51 +0.3
4,346,971 + Ga0059261_4195 0.51 +0.5
4,346,971 + Ga0059261_4195 0.51 +1.3
4,346,971 + Ga0059261_4195 0.51 +0.8
4,346,972 - Ga0059261_4195 0.51 -0.0
4,346,972 - Ga0059261_4195 0.51 +0.1
4,346,972 - Ga0059261_4195 0.51 +0.4
4,346,972 - Ga0059261_4195 0.51 +1.1
4,347,007 + Ga0059261_4195 0.55 +1.8
4,347,008 - Ga0059261_4195 0.55 +0.2
4,347,008 - Ga0059261_4195 0.55 +0.8
4,347,068 - Ga0059261_4195 0.62 +0.5
4,347,155 - Ga0059261_4195 0.73 +0.3
4,347,155 - Ga0059261_4195 0.73 -0.1
4,347,155 - Ga0059261_4195 0.73 -0.4
4,347,202 + Ga0059261_4195 0.78 +0.5
4,347,202 + Ga0059261_4195 0.78 +0.3
4,347,203 - Ga0059261_4195 0.78 +0.3
4,347,203 - Ga0059261_4195 0.78 +0.2
4,347,203 - Ga0059261_4195 0.78 +0.5
4,347,277 + Ga0059261_4195 0.87 +0.5
4,347,277 + Ga0059261_4195 0.87 -0.1
4,347,277 + Ga0059261_4195 0.87 +0.7

Or see this region's nucleotide sequence