Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2070

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2069 and Ga0059261_2070 are separated by 9 nucleotidesGa0059261_2070 and Ga0059261_2071 overlap by 8 nucleotides Ga0059261_2069: Ga0059261_2069 - ATPase, FliI/YscN family, at 2,168,577 to 2,169,905 _2069 Ga0059261_2070: Ga0059261_2070 - Flagellar assembly protein FliH, at 2,169,915 to 2,170,634 _2070 Ga0059261_2071: Ga0059261_2071 - flagellar motor switch protein FliG, at 2,170,627 to 2,171,637 _2071 Ga0059261_2072: Ga0059261_2072 - flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF), at 2,171,634 to 2,173,301 _2072 Position (kb) 2169 2170 2171Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2168.969 kb on + strand, within Ga0059261_2069at 2168.971 kb on + strand, within Ga0059261_2069at 2168.971 kb on + strand, within Ga0059261_2069at 2168.971 kb on + strand, within Ga0059261_2069at 2168.971 kb on + strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2168.972 kb on - strand, within Ga0059261_2069at 2169.483 kb on + strand, within Ga0059261_2069at 2169.483 kb on + strand, within Ga0059261_2069at 2169.484 kb on - strand, within Ga0059261_2069at 2169.588 kb on + strand, within Ga0059261_2069at 2169.588 kb on + strand, within Ga0059261_2069at 2169.589 kb on - strand, within Ga0059261_2069at 2169.589 kb on - strand, within Ga0059261_2069at 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.814 kb on + strandat 2169.815 kb on - strandat 2169.815 kb on - strandat 2169.815 kb on - strandat 2169.815 kb on - strandat 2169.880 kb on + strandat 2169.880 kb on + strandat 2169.881 kb on - strandat 2169.900 kb on - strandat 2169.900 kb on - strandat 2169.900 kb on - strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.901 kb on + strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2169.902 kb on - strandat 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.037 kb on + strand, within Ga0059261_2070at 2170.038 kb on - strand, within Ga0059261_2070at 2170.038 kb on - strand, within Ga0059261_2070at 2170.038 kb on - strand, within Ga0059261_2070at 2170.038 kb on - strand, within Ga0059261_2070at 2170.370 kb on - strand, within Ga0059261_2070at 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.634 kb on + strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.635 kb on - strandat 2170.890 kb on + strand, within Ga0059261_2071at 2170.890 kb on + strand, within Ga0059261_2071at 2170.890 kb on + strand, within Ga0059261_2071at 2170.890 kb on + strand, within Ga0059261_2071at 2170.954 kb on + strand, within Ga0059261_2071at 2170.954 kb on + strand, within Ga0059261_2071at 2170.954 kb on + strand, within Ga0059261_2071at 2170.954 kb on + strand, within Ga0059261_2071at 2170.954 kb on + strand, within Ga0059261_2071at 2170.954 kb on + strand, within Ga0059261_2071at 2170.955 kb on - strand, within Ga0059261_2071

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,168,969 + Ga0059261_2069 0.29 -0.3
2,168,971 + Ga0059261_2069 0.30 +0.4
2,168,971 + Ga0059261_2069 0.30 +0.0
2,168,971 + Ga0059261_2069 0.30 +0.8
2,168,971 + Ga0059261_2069 0.30 +0.2
2,168,972 - Ga0059261_2069 0.30 -0.9
2,168,972 - Ga0059261_2069 0.30 +0.1
2,168,972 - Ga0059261_2069 0.30 +0.3
2,168,972 - Ga0059261_2069 0.30 +0.4
2,168,972 - Ga0059261_2069 0.30 +0.2
2,168,972 - Ga0059261_2069 0.30 +0.2
2,169,483 + Ga0059261_2069 0.68 +0.5
2,169,483 + Ga0059261_2069 0.68 +1.1
2,169,484 - Ga0059261_2069 0.68 +0.7
2,169,588 + Ga0059261_2069 0.76 +1.1
2,169,588 + Ga0059261_2069 0.76 +0.0
2,169,589 - Ga0059261_2069 0.76 +0.2
2,169,589 - Ga0059261_2069 0.76 -0.8
2,169,814 + -0.5
2,169,814 + +0.1
2,169,814 + -0.1
2,169,814 + +1.1
2,169,814 + -1.9
2,169,814 + +0.1
2,169,814 + +0.5
2,169,815 - +0.9
2,169,815 - -0.3
2,169,815 - +1.1
2,169,815 - -0.1
2,169,880 + +0.3
2,169,880 + +0.4
2,169,881 - +0.1
2,169,900 - -0.6
2,169,900 - -0.2
2,169,900 - +0.1
2,169,901 + +0.7
2,169,901 + +0.4
2,169,901 + +0.4
2,169,901 + +0.9
2,169,901 + -0.0
2,169,901 + +0.5
2,169,901 + +0.4
2,169,901 + +1.4
2,169,901 + +0.4
2,169,901 + +0.2
2,169,901 + -1.2
2,169,901 + +0.4
2,169,901 + +0.2
2,169,901 + +0.7
2,169,901 + -0.4
2,169,901 + +1.1
2,169,901 + +1.1
2,169,901 + +0.2
2,169,902 - +1.2
2,169,902 - -1.5
2,169,902 - -0.6
2,169,902 - +1.0
2,169,902 - +1.0
2,169,902 - +0.8
2,169,902 - +0.6
2,169,902 - +0.4
2,169,902 - -0.1
2,169,902 - +0.1
2,169,902 - +0.5
2,169,902 - +0.3
2,169,902 - +0.5
2,169,902 - +1.8
2,169,902 - +0.2
2,170,037 + Ga0059261_2070 0.17 -0.4
2,170,037 + Ga0059261_2070 0.17 +0.4
2,170,037 + Ga0059261_2070 0.17 -0.1
2,170,037 + Ga0059261_2070 0.17 +0.5
2,170,037 + Ga0059261_2070 0.17 +0.8
2,170,037 + Ga0059261_2070 0.17 +0.6
2,170,037 + Ga0059261_2070 0.17 +0.1
2,170,037 + Ga0059261_2070 0.17 +0.4
2,170,037 + Ga0059261_2070 0.17 +0.6
2,170,037 + Ga0059261_2070 0.17 +0.5
2,170,037 + Ga0059261_2070 0.17 +1.3
2,170,037 + Ga0059261_2070 0.17 +0.7
2,170,037 + Ga0059261_2070 0.17 +0.2
2,170,037 + Ga0059261_2070 0.17 +3.1
2,170,038 - Ga0059261_2070 0.17 -0.0
2,170,038 - Ga0059261_2070 0.17 +1.3
2,170,038 - Ga0059261_2070 0.17 +0.4
2,170,038 - Ga0059261_2070 0.17 +0.2
2,170,370 - Ga0059261_2070 0.63 +0.1
2,170,634 + -0.6
2,170,634 + +0.2
2,170,634 + +0.5
2,170,634 + -0.1
2,170,634 + +0.1
2,170,634 + +0.7
2,170,634 + -0.4
2,170,634 + +0.3
2,170,634 + +0.4
2,170,634 + +0.2
2,170,635 - +1.1
2,170,635 - +0.2
2,170,635 - +0.3
2,170,635 - +0.4
2,170,635 - -0.4
2,170,635 - +1.4
2,170,635 - +0.5
2,170,635 - +0.9
2,170,890 + Ga0059261_2071 0.26 +0.2
2,170,890 + Ga0059261_2071 0.26 +0.6
2,170,890 + Ga0059261_2071 0.26 -0.1
2,170,890 + Ga0059261_2071 0.26 -0.6
2,170,954 + Ga0059261_2071 0.32 +0.8
2,170,954 + Ga0059261_2071 0.32 -0.3
2,170,954 + Ga0059261_2071 0.32 +0.2
2,170,954 + Ga0059261_2071 0.32 +0.8
2,170,954 + Ga0059261_2071 0.32 -0.1
2,170,954 + Ga0059261_2071 0.32 +0.1
2,170,955 - Ga0059261_2071 0.32 +1.3

Or see this region's nucleotide sequence