Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1945

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1944 and Ga0059261_1945 are separated by 93 nucleotidesGa0059261_1945 and Ga0059261_1946 overlap by 4 nucleotidesGa0059261_1946 and Ga0059261_1947 overlap by 4 nucleotides Ga0059261_1944: Ga0059261_1944 - GTP-binding protein Era, at 2,053,496 to 2,054,398 _1944 Ga0059261_1945: Ga0059261_1945 - Ketosteroid isomerase-related protein, at 2,054,492 to 2,054,926 _1945 Ga0059261_1946: Ga0059261_1946 - ribonuclease III, bacterial, at 2,054,923 to 2,055,588 _1946 Ga0059261_1947: Ga0059261_1947 - signal peptidase I, bacterial type, at 2,055,585 to 2,056,451 _1947 Position (kb) 2054 2055Strain fitness (log2 ratio) -2 -1 0 1 2at 2053.497 kb on + strandat 2053.498 kb on - strandat 2053.498 kb on - strandat 2053.527 kb on + strandat 2054.465 kb on + strandat 2054.795 kb on + strand, within Ga0059261_1945at 2054.796 kb on - strand, within Ga0059261_1945at 2054.796 kb on - strand, within Ga0059261_1945at 2054.796 kb on - strand, within Ga0059261_1945at 2054.807 kb on + strand, within Ga0059261_1945at 2054.807 kb on + strand, within Ga0059261_1945at 2054.808 kb on - strand, within Ga0059261_1945at 2054.808 kb on - strand, within Ga0059261_1945at 2054.808 kb on - strand, within Ga0059261_1945at 2054.808 kb on - strand, within Ga0059261_1945at 2054.858 kb on + strand, within Ga0059261_1945at 2054.858 kb on + strand, within Ga0059261_1945at 2054.858 kb on + strand, within Ga0059261_1945at 2054.858 kb on + strand, within Ga0059261_1945at 2054.858 kb on + strand, within Ga0059261_1945at 2054.858 kb on + strand, within Ga0059261_1945at 2054.858 kb on + strand, within Ga0059261_1945at 2054.858 kb on + strand, within Ga0059261_1945at 2054.858 kb on + strand, within Ga0059261_1945at 2054.858 kb on + strand, within Ga0059261_1945at 2054.859 kb on - strand, within Ga0059261_1945at 2054.859 kb on - strand, within Ga0059261_1945at 2054.859 kb on - strand, within Ga0059261_1945at 2054.859 kb on - strand, within Ga0059261_1945at 2054.860 kb on + strand, within Ga0059261_1945at 2054.860 kb on + strand, within Ga0059261_1945at 2054.860 kb on + strand, within Ga0059261_1945at 2054.860 kb on + strand, within Ga0059261_1945at 2054.860 kb on + strandat 2054.860 kb on + strand, within Ga0059261_1945at 2054.860 kb on + strandat 2054.860 kb on + strand, within Ga0059261_1945at 2054.861 kb on - strand, within Ga0059261_1945at 2054.861 kb on - strand, within Ga0059261_1945at 2054.861 kb on - strand, within Ga0059261_1945at 2054.861 kb on - strand, within Ga0059261_1945at 2054.861 kb on - strand, within Ga0059261_1945at 2054.861 kb on - strand, within Ga0059261_1945at 2054.861 kb on - strand, within Ga0059261_1945at 2054.866 kb on + strand, within Ga0059261_1945at 2054.867 kb on - strand, within Ga0059261_1945at 2054.924 kb on + strandat 2054.924 kb on + strandat 2054.924 kb on + strandat 2054.924 kb on + strandat 2054.924 kb on + strandat 2054.925 kb on - strandat 2054.925 kb on - strandat 2054.925 kb on - strandat 2054.925 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,053,497 + +0.2
2,053,498 - -0.1
2,053,498 - +0.1
2,053,527 + +0.3
2,054,465 + +0.2
2,054,795 + Ga0059261_1945 0.70 -0.3
2,054,796 - Ga0059261_1945 0.70 -1.2
2,054,796 - Ga0059261_1945 0.70 -0.6
2,054,796 - Ga0059261_1945 0.70 -1.9
2,054,807 + Ga0059261_1945 0.72 -0.1
2,054,807 + Ga0059261_1945 0.72 +0.4
2,054,808 - Ga0059261_1945 0.73 -1.1
2,054,808 - Ga0059261_1945 0.73 -0.5
2,054,808 - Ga0059261_1945 0.73 +0.1
2,054,808 - Ga0059261_1945 0.73 -0.1
2,054,858 + Ga0059261_1945 0.84 -0.6
2,054,858 + Ga0059261_1945 0.84 +0.5
2,054,858 + Ga0059261_1945 0.84 -0.2
2,054,858 + Ga0059261_1945 0.84 -0.6
2,054,858 + Ga0059261_1945 0.84 -1.9
2,054,858 + Ga0059261_1945 0.84 -0.1
2,054,858 + Ga0059261_1945 0.84 -0.6
2,054,858 + Ga0059261_1945 0.84 +0.1
2,054,858 + Ga0059261_1945 0.84 +0.3
2,054,858 + Ga0059261_1945 0.84 -0.5
2,054,859 - Ga0059261_1945 0.84 -0.6
2,054,859 - Ga0059261_1945 0.84 +0.7
2,054,859 - Ga0059261_1945 0.84 -0.5
2,054,859 - Ga0059261_1945 0.84 -0.2
2,054,860 + Ga0059261_1945 0.85 -0.0
2,054,860 + Ga0059261_1945 0.85 -0.1
2,054,860 + Ga0059261_1945 0.85 -0.2
2,054,860 + Ga0059261_1945 0.85 +0.5
2,054,860 + +2.1
2,054,860 + Ga0059261_1945 0.85 +2.1
2,054,860 + +0.5
2,054,860 + Ga0059261_1945 0.85 -0.7
2,054,861 - Ga0059261_1945 0.85 -0.5
2,054,861 - Ga0059261_1945 0.85 -1.5
2,054,861 - Ga0059261_1945 0.85 +0.4
2,054,861 - Ga0059261_1945 0.85 -0.6
2,054,861 - Ga0059261_1945 0.85 -0.4
2,054,861 - Ga0059261_1945 0.85 +0.7
2,054,861 - Ga0059261_1945 0.85 +1.0
2,054,866 + Ga0059261_1945 0.86 -0.3
2,054,867 - Ga0059261_1945 0.86 +0.7
2,054,924 + +0.3
2,054,924 + +0.0
2,054,924 + -0.4
2,054,924 + +0.1
2,054,924 + -0.7
2,054,925 - -0.3
2,054,925 - +0.1
2,054,925 - -0.4
2,054,925 - +0.1

Or see this region's nucleotide sequence