Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1391

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1390 and Ga0059261_1391 overlap by 4 nucleotidesGa0059261_1391 and Ga0059261_1392 are separated by 115 nucleotides Ga0059261_1390: Ga0059261_1390 - Uncharacterized protein conserved in bacteria, at 1,467,717 to 1,468,853 _1390 Ga0059261_1391: Ga0059261_1391 - hypothetical protein, at 1,468,850 to 1,470,550 _1391 Ga0059261_1392: Ga0059261_1392 - hypothetical protein, at 1,470,666 to 1,472,363 _1392 Position (kb) 1468 1469 1470 1471Strain fitness (log2 ratio) -2 -1 0 1 2at 1467.933 kb on + strand, within Ga0059261_1390at 1467.933 kb on + strand, within Ga0059261_1390at 1467.934 kb on - strand, within Ga0059261_1390at 1467.934 kb on - strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.960 kb on + strand, within Ga0059261_1390at 1467.961 kb on - strand, within Ga0059261_1390at 1467.961 kb on - strand, within Ga0059261_1390at 1467.961 kb on - strand, within Ga0059261_1390at 1467.961 kb on - strand, within Ga0059261_1390at 1467.961 kb on - strand, within Ga0059261_1390at 1468.011 kb on + strand, within Ga0059261_1390at 1468.011 kb on + strand, within Ga0059261_1390at 1468.011 kb on + strand, within Ga0059261_1390at 1468.011 kb on + strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strandat 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.012 kb on - strand, within Ga0059261_1390at 1468.014 kb on + strand, within Ga0059261_1390at 1468.014 kb on + strand, within Ga0059261_1390at 1468.014 kb on + strand, within Ga0059261_1390at 1468.014 kb on + strand, within Ga0059261_1390at 1468.014 kb on + strand, within Ga0059261_1390at 1468.015 kb on - strand, within Ga0059261_1390at 1468.015 kb on - strand, within Ga0059261_1390at 1468.015 kb on - strand, within Ga0059261_1390at 1468.072 kb on + strand, within Ga0059261_1390at 1468.073 kb on - strand, within Ga0059261_1390at 1468.245 kb on + strand, within Ga0059261_1390at 1468.246 kb on - strandat 1468.246 kb on - strand, within Ga0059261_1390at 1468.398 kb on + strand, within Ga0059261_1390at 1468.398 kb on + strand, within Ga0059261_1390at 1468.398 kb on + strand, within Ga0059261_1390at 1468.398 kb on + strand, within Ga0059261_1390at 1468.398 kb on + strand, within Ga0059261_1390at 1468.399 kb on - strand, within Ga0059261_1390at 1468.399 kb on - strand, within Ga0059261_1390at 1468.399 kb on - strand, within Ga0059261_1390at 1468.434 kb on + strand, within Ga0059261_1390at 1468.435 kb on - strand, within Ga0059261_1390at 1468.435 kb on - strand, within Ga0059261_1390at 1468.435 kb on - strand, within Ga0059261_1390at 1468.435 kb on - strand, within Ga0059261_1390at 1468.489 kb on + strand, within Ga0059261_1390at 1468.489 kb on + strand, within Ga0059261_1390at 1468.489 kb on + strand, within Ga0059261_1390at 1468.489 kb on + strand, within Ga0059261_1390at 1468.489 kb on + strand, within Ga0059261_1390at 1468.490 kb on - strand, within Ga0059261_1390at 1468.560 kb on + strand, within Ga0059261_1390at 1468.560 kb on + strand, within Ga0059261_1390at 1468.560 kb on + strand, within Ga0059261_1390at 1468.560 kb on + strand, within Ga0059261_1390at 1468.560 kb on + strand, within Ga0059261_1390at 1468.561 kb on - strand, within Ga0059261_1390at 1468.561 kb on - strand, within Ga0059261_1390at 1468.561 kb on - strand, within Ga0059261_1390at 1468.561 kb on - strand, within Ga0059261_1390at 1468.569 kb on + strand, within Ga0059261_1390at 1468.580 kb on + strand, within Ga0059261_1390at 1468.581 kb on - strand, within Ga0059261_1390at 1468.617 kb on + strand, within Ga0059261_1390at 1468.617 kb on + strand, within Ga0059261_1390at 1468.617 kb on + strand, within Ga0059261_1390at 1468.617 kb on + strand, within Ga0059261_1390at 1468.618 kb on - strand, within Ga0059261_1390at 1468.618 kb on - strand, within Ga0059261_1390at 1468.618 kb on - strand, within Ga0059261_1390at 1468.618 kb on - strand, within Ga0059261_1390at 1468.620 kb on + strand, within Ga0059261_1390at 1468.620 kb on + strand, within Ga0059261_1390at 1468.621 kb on - strand, within Ga0059261_1390at 1468.621 kb on - strand, within Ga0059261_1390at 1468.621 kb on - strandat 1468.705 kb on - strand, within Ga0059261_1390at 1468.734 kb on + strand, within Ga0059261_1390at 1468.734 kb on + strand, within Ga0059261_1390at 1468.734 kb on + strand, within Ga0059261_1390at 1468.734 kb on + strand, within Ga0059261_1390at 1468.734 kb on + strand, within Ga0059261_1390at 1468.734 kb on + strand, within Ga0059261_1390at 1468.735 kb on - strand, within Ga0059261_1390at 1468.735 kb on - strand, within Ga0059261_1390at 1468.773 kb on + strandat 1468.852 kb on - strandat 1468.942 kb on - strandat 1468.967 kb on + strandat 1468.968 kb on - strandat 1468.968 kb on - strandat 1468.968 kb on - strandat 1470.612 kb on + strandat 1470.612 kb on + strandat 1470.613 kb on - strandat 1470.613 kb on - strandat 1470.682 kb on + strandat 1470.682 kb on + strandat 1470.683 kb on - strandat 1470.683 kb on - strandat 1470.683 kb on - strandat 1470.793 kb on + strandat 1470.793 kb on + strandat 1470.793 kb on + strandat 1470.793 kb on + strandat 1470.794 kb on - strandat 1470.794 kb on - strandat 1470.794 kb on - strandat 1470.817 kb on + strandat 1470.817 kb on + strandat 1470.818 kb on - strandat 1470.818 kb on - strandat 1470.818 kb on - strandat 1470.818 kb on - strandat 1470.880 kb on + strand, within Ga0059261_1392at 1470.881 kb on - strand, within Ga0059261_1392at 1470.913 kb on + strand, within Ga0059261_1392at 1470.913 kb on + strand, within Ga0059261_1392at 1470.914 kb on - strand, within Ga0059261_1392at 1470.914 kb on - strand, within Ga0059261_1392at 1470.914 kb on - strand, within Ga0059261_1392at 1470.914 kb on - strand, within Ga0059261_1392at 1470.955 kb on + strand, within Ga0059261_1392at 1470.956 kb on - strand, within Ga0059261_1392at 1471.090 kb on + strand, within Ga0059261_1392at 1471.090 kb on + strand, within Ga0059261_1392at 1471.090 kb on + strand, within Ga0059261_1392at 1471.091 kb on - strand, within Ga0059261_1392at 1471.091 kb on - strand, within Ga0059261_1392at 1471.201 kb on + strand, within Ga0059261_1392at 1471.201 kb on + strand, within Ga0059261_1392at 1471.201 kb on + strand, within Ga0059261_1392at 1471.201 kb on + strand, within Ga0059261_1392at 1471.202 kb on - strand, within Ga0059261_1392at 1471.337 kb on - strand, within Ga0059261_1392at 1471.346 kb on + strand, within Ga0059261_1392at 1471.346 kb on + strand, within Ga0059261_1392at 1471.346 kb on + strand, within Ga0059261_1392at 1471.346 kb on + strand, within Ga0059261_1392at 1471.346 kb on + strand, within Ga0059261_1392at 1471.346 kb on + strand, within Ga0059261_1392at 1471.347 kb on - strand, within Ga0059261_1392at 1471.347 kb on - strand, within Ga0059261_1392at 1471.347 kb on - strand, within Ga0059261_1392at 1471.347 kb on - strand, within Ga0059261_1392at 1471.347 kb on - strand, within Ga0059261_1392at 1471.432 kb on + strand, within Ga0059261_1392at 1471.432 kb on + strand, within Ga0059261_1392at 1471.432 kb on + strand, within Ga0059261_1392at 1471.433 kb on - strand, within Ga0059261_1392at 1471.433 kb on - strand, within Ga0059261_1392at 1471.433 kb on - strand, within Ga0059261_1392at 1471.529 kb on + strand, within Ga0059261_1392at 1471.529 kb on + strand, within Ga0059261_1392at 1471.529 kb on + strand, within Ga0059261_1392at 1471.530 kb on - strand, within Ga0059261_1392at 1471.530 kb on - strand, within Ga0059261_1392at 1471.530 kb on - strand, within Ga0059261_1392at 1471.530 kb on - strand, within Ga0059261_1392at 1471.530 kb on - strand, within Ga0059261_1392

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,467,933 + Ga0059261_1390 0.19 +1.0
1,467,933 + Ga0059261_1390 0.19 -0.2
1,467,934 - Ga0059261_1390 0.19 +0.5
1,467,934 - Ga0059261_1390 0.19 +0.1
1,467,960 + Ga0059261_1390 0.21 +0.2
1,467,960 + Ga0059261_1390 0.21 +0.1
1,467,960 + Ga0059261_1390 0.21 +0.2
1,467,960 + Ga0059261_1390 0.21 +0.1
1,467,960 + Ga0059261_1390 0.21 +0.3
1,467,960 + Ga0059261_1390 0.21 +0.3
1,467,960 + Ga0059261_1390 0.21 -0.4
1,467,960 + Ga0059261_1390 0.21 -0.1
1,467,960 + Ga0059261_1390 0.21 -0.1
1,467,961 - Ga0059261_1390 0.21 +0.4
1,467,961 - Ga0059261_1390 0.21 -0.1
1,467,961 - Ga0059261_1390 0.21 +0.1
1,467,961 - Ga0059261_1390 0.21 +1.1
1,467,961 - Ga0059261_1390 0.21 +0.2
1,468,011 + Ga0059261_1390 0.26 -0.5
1,468,011 + Ga0059261_1390 0.26 -0.2
1,468,011 + Ga0059261_1390 0.26 -0.2
1,468,011 + Ga0059261_1390 0.26 -0.8
1,468,012 - Ga0059261_1390 0.26 -0.6
1,468,012 - Ga0059261_1390 0.26 -0.5
1,468,012 - Ga0059261_1390 0.26 -0.8
1,468,012 - Ga0059261_1390 0.26 -0.6
1,468,012 - +2.0
1,468,012 - Ga0059261_1390 0.26 +0.5
1,468,012 - Ga0059261_1390 0.26 +0.2
1,468,012 - Ga0059261_1390 0.26 +0.1
1,468,014 + Ga0059261_1390 0.26 -0.8
1,468,014 + Ga0059261_1390 0.26 -0.2
1,468,014 + Ga0059261_1390 0.26 +0.0
1,468,014 + Ga0059261_1390 0.26 +0.5
1,468,014 + Ga0059261_1390 0.26 +0.7
1,468,015 - Ga0059261_1390 0.26 -0.1
1,468,015 - Ga0059261_1390 0.26 +0.1
1,468,015 - Ga0059261_1390 0.26 -0.2
1,468,072 + Ga0059261_1390 0.31 -0.5
1,468,073 - Ga0059261_1390 0.31 +0.6
1,468,245 + Ga0059261_1390 0.46 -0.5
1,468,246 - +1.4
1,468,246 - Ga0059261_1390 0.47 +0.6
1,468,398 + Ga0059261_1390 0.60 -0.0
1,468,398 + Ga0059261_1390 0.60 +0.6
1,468,398 + Ga0059261_1390 0.60 +1.3
1,468,398 + Ga0059261_1390 0.60 +0.3
1,468,398 + Ga0059261_1390 0.60 +1.0
1,468,399 - Ga0059261_1390 0.60 +0.5
1,468,399 - Ga0059261_1390 0.60 +0.5
1,468,399 - Ga0059261_1390 0.60 +0.5
1,468,434 + Ga0059261_1390 0.63 +0.5
1,468,435 - Ga0059261_1390 0.63 -0.7
1,468,435 - Ga0059261_1390 0.63 -0.5
1,468,435 - Ga0059261_1390 0.63 +0.2
1,468,435 - Ga0059261_1390 0.63 -0.0
1,468,489 + Ga0059261_1390 0.68 -0.5
1,468,489 + Ga0059261_1390 0.68 +0.4
1,468,489 + Ga0059261_1390 0.68 -0.6
1,468,489 + Ga0059261_1390 0.68 -0.5
1,468,489 + Ga0059261_1390 0.68 -0.2
1,468,490 - Ga0059261_1390 0.68 -0.1
1,468,560 + Ga0059261_1390 0.74 -0.3
1,468,560 + Ga0059261_1390 0.74 -0.5
1,468,560 + Ga0059261_1390 0.74 +0.0
1,468,560 + Ga0059261_1390 0.74 +0.0
1,468,560 + Ga0059261_1390 0.74 -0.6
1,468,561 - Ga0059261_1390 0.74 +0.1
1,468,561 - Ga0059261_1390 0.74 -0.3
1,468,561 - Ga0059261_1390 0.74 +0.3
1,468,561 - Ga0059261_1390 0.74 -1.8
1,468,569 + Ga0059261_1390 0.75 +0.8
1,468,580 + Ga0059261_1390 0.76 +0.3
1,468,581 - Ga0059261_1390 0.76 -0.1
1,468,617 + Ga0059261_1390 0.79 +0.6
1,468,617 + Ga0059261_1390 0.79 +0.2
1,468,617 + Ga0059261_1390 0.79 -0.0
1,468,617 + Ga0059261_1390 0.79 +1.0
1,468,618 - Ga0059261_1390 0.79 -0.4
1,468,618 - Ga0059261_1390 0.79 +1.2
1,468,618 - Ga0059261_1390 0.79 +0.4
1,468,618 - Ga0059261_1390 0.79 -0.3
1,468,620 + Ga0059261_1390 0.79 +0.5
1,468,620 + Ga0059261_1390 0.79 -0.2
1,468,621 - Ga0059261_1390 0.80 -0.7
1,468,621 - Ga0059261_1390 0.80 -0.1
1,468,621 - -1.4
1,468,705 - Ga0059261_1390 0.87 -0.0
1,468,734 + Ga0059261_1390 0.89 -0.4
1,468,734 + Ga0059261_1390 0.89 -0.3
1,468,734 + Ga0059261_1390 0.89 +0.8
1,468,734 + Ga0059261_1390 0.89 +0.3
1,468,734 + Ga0059261_1390 0.89 -0.3
1,468,734 + Ga0059261_1390 0.89 +0.4
1,468,735 - Ga0059261_1390 0.90 +0.4
1,468,735 - Ga0059261_1390 0.90 +0.2
1,468,773 + -0.8
1,468,852 - -0.2
1,468,942 - -0.4
1,468,967 + +0.8
1,468,968 - +0.7
1,468,968 - +1.0
1,468,968 - +0.5
1,470,612 + +0.5
1,470,612 + +0.2
1,470,613 - -0.5
1,470,613 - -0.2
1,470,682 + -0.4
1,470,682 + -0.6
1,470,683 - +0.8
1,470,683 - +0.1
1,470,683 - +0.1
1,470,793 + -0.2
1,470,793 + +0.4
1,470,793 + +0.8
1,470,793 + +1.4
1,470,794 - +1.1
1,470,794 - -0.6
1,470,794 - -0.1
1,470,817 + -0.6
1,470,817 + -0.6
1,470,818 - -0.2
1,470,818 - +0.4
1,470,818 - +0.2
1,470,818 - -0.2
1,470,880 + Ga0059261_1392 0.13 +0.5
1,470,881 - Ga0059261_1392 0.13 +0.2
1,470,913 + Ga0059261_1392 0.15 -0.2
1,470,913 + Ga0059261_1392 0.15 -1.2
1,470,914 - Ga0059261_1392 0.15 +1.4
1,470,914 - Ga0059261_1392 0.15 -0.2
1,470,914 - Ga0059261_1392 0.15 +0.2
1,470,914 - Ga0059261_1392 0.15 +0.7
1,470,955 + Ga0059261_1392 0.17 -0.0
1,470,956 - Ga0059261_1392 0.17 +0.4
1,471,090 + Ga0059261_1392 0.25 +0.6
1,471,090 + Ga0059261_1392 0.25 +0.8
1,471,090 + Ga0059261_1392 0.25 +0.1
1,471,091 - Ga0059261_1392 0.25 -1.0
1,471,091 - Ga0059261_1392 0.25 +0.8
1,471,201 + Ga0059261_1392 0.32 -0.4
1,471,201 + Ga0059261_1392 0.32 +0.2
1,471,201 + Ga0059261_1392 0.32 +0.1
1,471,201 + Ga0059261_1392 0.32 +0.8
1,471,202 - Ga0059261_1392 0.32 +0.4
1,471,337 - Ga0059261_1392 0.40 -0.6
1,471,346 + Ga0059261_1392 0.40 +0.8
1,471,346 + Ga0059261_1392 0.40 +0.6
1,471,346 + Ga0059261_1392 0.40 +0.4
1,471,346 + Ga0059261_1392 0.40 +0.3
1,471,346 + Ga0059261_1392 0.40 +0.6
1,471,346 + Ga0059261_1392 0.40 -0.2
1,471,347 - Ga0059261_1392 0.40 -0.1
1,471,347 - Ga0059261_1392 0.40 -0.3
1,471,347 - Ga0059261_1392 0.40 +0.1
1,471,347 - Ga0059261_1392 0.40 +0.9
1,471,347 - Ga0059261_1392 0.40 +0.2
1,471,432 + Ga0059261_1392 0.45 +0.5
1,471,432 + Ga0059261_1392 0.45 +0.4
1,471,432 + Ga0059261_1392 0.45 +0.4
1,471,433 - Ga0059261_1392 0.45 +0.5
1,471,433 - Ga0059261_1392 0.45 -1.0
1,471,433 - Ga0059261_1392 0.45 -0.2
1,471,529 + Ga0059261_1392 0.51 +0.2
1,471,529 + Ga0059261_1392 0.51 +0.3
1,471,529 + Ga0059261_1392 0.51 +0.0
1,471,530 - Ga0059261_1392 0.51 -0.8
1,471,530 - Ga0059261_1392 0.51 -0.6
1,471,530 - Ga0059261_1392 0.51 -0.0
1,471,530 - Ga0059261_1392 0.51 +0.4
1,471,530 - Ga0059261_1392 0.51 +0.2

Or see this region's nucleotide sequence