Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19080

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19070 and CSW01_19075 are separated by 120 nucleotidesCSW01_19075 and CSW01_19080 are separated by 9 nucleotidesCSW01_19080 and CSW01_19085 are separated by 120 nucleotides CSW01_19070: CSW01_19070 - LysR family transcriptional regulator, at 943,571 to 944,497 _19070 CSW01_19075: CSW01_19075 - glutaredoxin 2, at 944,618 to 945,274 _19075 CSW01_19080: CSW01_19080 - alkene reductase, at 945,284 to 946,387 _19080 CSW01_19085: CSW01_19085 - amidinotransferase, at 946,508 to 947,488 _19085 Position (kb) 945 946 947Strain fitness (log2 ratio) -2 -1 0 1 2 3at 944.319 kb on - strand, within CSW01_19070at 944.397 kb on - strand, within CSW01_19070at 944.446 kb on - strandat 944.577 kb on + strandat 944.587 kb on + strandat 944.660 kb on - strandat 944.688 kb on - strand, within CSW01_19075at 944.706 kb on + strand, within CSW01_19075at 944.714 kb on - strand, within CSW01_19075at 944.846 kb on - strand, within CSW01_19075at 944.883 kb on - strand, within CSW01_19075at 944.936 kb on - strand, within CSW01_19075at 944.950 kb on + strand, within CSW01_19075at 945.005 kb on - strand, within CSW01_19075at 945.005 kb on - strand, within CSW01_19075at 945.053 kb on + strand, within CSW01_19075at 945.061 kb on - strand, within CSW01_19075at 945.063 kb on + strand, within CSW01_19075at 945.063 kb on + strand, within CSW01_19075at 945.096 kb on + strand, within CSW01_19075at 945.214 kb on - strandat 945.326 kb on + strandat 945.326 kb on + strandat 945.334 kb on - strandat 945.334 kb on - strandat 945.347 kb on + strandat 945.355 kb on - strandat 945.463 kb on - strand, within CSW01_19080at 945.478 kb on + strand, within CSW01_19080at 945.642 kb on + strand, within CSW01_19080at 945.657 kb on - strand, within CSW01_19080at 945.719 kb on + strand, within CSW01_19080at 945.722 kb on - strand, within CSW01_19080at 945.722 kb on - strand, within CSW01_19080at 945.722 kb on - strand, within CSW01_19080at 945.755 kb on + strand, within CSW01_19080at 945.808 kb on - strand, within CSW01_19080at 945.827 kb on + strand, within CSW01_19080at 945.890 kb on + strand, within CSW01_19080at 946.012 kb on - strand, within CSW01_19080at 946.012 kb on - strand, within CSW01_19080at 946.023 kb on - strand, within CSW01_19080at 946.044 kb on + strand, within CSW01_19080at 946.044 kb on + strand, within CSW01_19080at 946.084 kb on - strand, within CSW01_19080at 946.109 kb on + strand, within CSW01_19080at 946.158 kb on - strand, within CSW01_19080at 946.208 kb on - strand, within CSW01_19080at 946.348 kb on - strandat 946.348 kb on - strandat 946.348 kb on - strandat 946.456 kb on + strandat 946.468 kb on + strandat 946.555 kb on - strandat 946.607 kb on - strand, within CSW01_19085at 946.722 kb on + strand, within CSW01_19085at 946.948 kb on - strand, within CSW01_19085at 946.948 kb on - strand, within CSW01_19085at 946.956 kb on + strand, within CSW01_19085at 946.974 kb on - strand, within CSW01_19085at 947.022 kb on - strand, within CSW01_19085at 947.064 kb on - strand, within CSW01_19085at 947.184 kb on + strand, within CSW01_19085at 947.184 kb on + strand, within CSW01_19085at 947.233 kb on - strand, within CSW01_19085at 947.238 kb on - strand, within CSW01_19085at 947.371 kb on - strand, within CSW01_19085at 947.380 kb on + strand, within CSW01_19085

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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944,319 - CSW01_19070 0.81 +0.3
944,397 - CSW01_19070 0.89 -0.1
944,446 - -1.6
944,577 + +0.0
944,587 + +1.0
944,660 - -0.5
944,688 - CSW01_19075 0.11 -1.9
944,706 + CSW01_19075 0.13 -0.5
944,714 - CSW01_19075 0.15 +0.2
944,846 - CSW01_19075 0.35 -0.2
944,883 - CSW01_19075 0.40 +0.5
944,936 - CSW01_19075 0.48 -0.3
944,950 + CSW01_19075 0.51 -0.0
945,005 - CSW01_19075 0.59 -1.6
945,005 - CSW01_19075 0.59 +0.5
945,053 + CSW01_19075 0.66 -0.7
945,061 - CSW01_19075 0.67 +0.4
945,063 + CSW01_19075 0.68 +0.3
945,063 + CSW01_19075 0.68 +0.3
945,096 + CSW01_19075 0.73 +1.1
945,214 - -0.5
945,326 + +1.1
945,326 + +0.1
945,334 - +0.1
945,334 - -0.8
945,347 + -2.5
945,355 - -0.2
945,463 - CSW01_19080 0.16 +0.5
945,478 + CSW01_19080 0.18 +1.3
945,642 + CSW01_19080 0.32 -0.7
945,657 - CSW01_19080 0.34 +0.8
945,719 + CSW01_19080 0.39 -0.3
945,722 - CSW01_19080 0.40 +1.4
945,722 - CSW01_19080 0.40 +0.2
945,722 - CSW01_19080 0.40 +0.1
945,755 + CSW01_19080 0.43 -0.4
945,808 - CSW01_19080 0.47 -0.3
945,827 + CSW01_19080 0.49 +0.3
945,890 + CSW01_19080 0.55 -1.5
946,012 - CSW01_19080 0.66 -0.1
946,012 - CSW01_19080 0.66 -0.1
946,023 - CSW01_19080 0.67 +0.1
946,044 + CSW01_19080 0.69 -0.1
946,044 + CSW01_19080 0.69 +2.8
946,084 - CSW01_19080 0.72 +1.1
946,109 + CSW01_19080 0.75 +0.7
946,158 - CSW01_19080 0.79 -0.1
946,208 - CSW01_19080 0.84 -0.6
946,348 - +1.0
946,348 - +1.1
946,348 - +1.4
946,456 + +0.3
946,468 + -0.0
946,555 - +0.2
946,607 - CSW01_19085 0.10 +0.2
946,722 + CSW01_19085 0.22 +0.3
946,948 - CSW01_19085 0.45 -1.1
946,948 - CSW01_19085 0.45 +0.1
946,956 + CSW01_19085 0.46 -0.4
946,974 - CSW01_19085 0.48 -0.4
947,022 - CSW01_19085 0.52 -2.5
947,064 - CSW01_19085 0.57 -0.7
947,184 + CSW01_19085 0.69 +0.1
947,184 + CSW01_19085 0.69 -1.1
947,233 - CSW01_19085 0.74 -0.3
947,238 - CSW01_19085 0.74 +0.2
947,371 - CSW01_19085 0.88 +0.3
947,380 + CSW01_19085 0.89 +0.7

Or see this region's nucleotide sequence