Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19050

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19045 and CSW01_19050 are separated by 134 nucleotidesCSW01_19050 and CSW01_19055 are separated by 182 nucleotides CSW01_19045: CSW01_19045 - phosphoenolpyruvate synthase regulatory protein, at 935,304 to 936,137 _19045 CSW01_19050: CSW01_19050 - phosphoenolpyruvate synthase, at 936,272 to 938,683 _19050 CSW01_19055: CSW01_19055 - chemotaxis protein, at 938,866 to 940,422 _19055 Position (kb) 936 937 938 939Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 935.319 kb on + strandat 935.377 kb on + strandat 935.472 kb on - strand, within CSW01_19045at 935.528 kb on + strand, within CSW01_19045at 935.697 kb on + strand, within CSW01_19045at 935.730 kb on + strand, within CSW01_19045at 935.733 kb on + strand, within CSW01_19045at 935.738 kb on - strand, within CSW01_19045at 935.843 kb on + strand, within CSW01_19045at 935.845 kb on + strand, within CSW01_19045at 935.851 kb on - strand, within CSW01_19045at 935.851 kb on - strand, within CSW01_19045at 935.851 kb on - strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.901 kb on - strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.944 kb on - strand, within CSW01_19045at 935.970 kb on - strand, within CSW01_19045at 935.979 kb on - strand, within CSW01_19045at 936.053 kb on + strand, within CSW01_19045at 936.110 kb on + strandat 936.486 kb on + strandat 936.527 kb on - strand, within CSW01_19050at 936.547 kb on + strand, within CSW01_19050at 936.547 kb on + strand, within CSW01_19050at 936.555 kb on - strand, within CSW01_19050at 936.592 kb on + strand, within CSW01_19050at 936.595 kb on - strand, within CSW01_19050at 936.686 kb on + strand, within CSW01_19050at 936.702 kb on - strand, within CSW01_19050at 936.702 kb on - strand, within CSW01_19050at 936.702 kb on - strand, within CSW01_19050at 936.796 kb on - strand, within CSW01_19050at 936.833 kb on + strand, within CSW01_19050at 936.842 kb on - strand, within CSW01_19050at 936.844 kb on + strand, within CSW01_19050at 936.913 kb on - strand, within CSW01_19050at 936.977 kb on + strand, within CSW01_19050at 936.996 kb on - strand, within CSW01_19050at 937.008 kb on - strand, within CSW01_19050at 937.008 kb on - strand, within CSW01_19050at 937.036 kb on + strand, within CSW01_19050at 937.058 kb on - strand, within CSW01_19050at 937.077 kb on + strand, within CSW01_19050at 937.077 kb on + strand, within CSW01_19050at 937.085 kb on - strand, within CSW01_19050at 937.166 kb on - strand, within CSW01_19050at 937.257 kb on + strand, within CSW01_19050at 937.282 kb on + strand, within CSW01_19050at 937.282 kb on + strand, within CSW01_19050at 937.282 kb on + strand, within CSW01_19050at 937.282 kb on + strand, within CSW01_19050at 937.282 kb on + strand, within CSW01_19050at 937.282 kb on + strand, within CSW01_19050at 937.282 kb on + strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.290 kb on - strand, within CSW01_19050at 937.292 kb on + strand, within CSW01_19050at 937.300 kb on - strand, within CSW01_19050at 937.367 kb on - strand, within CSW01_19050at 937.373 kb on + strand, within CSW01_19050at 937.373 kb on + strand, within CSW01_19050at 937.376 kb on - strand, within CSW01_19050at 937.378 kb on + strand, within CSW01_19050at 937.405 kb on - strand, within CSW01_19050at 937.460 kb on + strand, within CSW01_19050at 937.629 kb on + strand, within CSW01_19050at 937.679 kb on + strand, within CSW01_19050at 937.687 kb on - strand, within CSW01_19050at 937.692 kb on - strand, within CSW01_19050at 937.728 kb on - strand, within CSW01_19050at 937.812 kb on - strand, within CSW01_19050at 937.825 kb on - strand, within CSW01_19050at 937.831 kb on - strand, within CSW01_19050at 937.878 kb on - strand, within CSW01_19050at 937.952 kb on - strand, within CSW01_19050at 937.976 kb on - strand, within CSW01_19050at 937.985 kb on + strand, within CSW01_19050at 938.062 kb on - strand, within CSW01_19050at 938.163 kb on + strand, within CSW01_19050at 938.163 kb on + strand, within CSW01_19050at 938.163 kb on + strand, within CSW01_19050at 938.163 kb on + strand, within CSW01_19050at 938.250 kb on + strand, within CSW01_19050at 938.255 kb on + strand, within CSW01_19050at 938.255 kb on + strand, within CSW01_19050at 938.263 kb on - strand, within CSW01_19050at 938.427 kb on + strand, within CSW01_19050at 938.427 kb on + strand, within CSW01_19050at 938.484 kb on - strandat 938.588 kb on - strandat 938.621 kb on - strandat 938.637 kb on + strandat 938.660 kb on - strandat 938.677 kb on + strandat 938.690 kb on - strandat 938.758 kb on + strandat 938.828 kb on + strandat 938.835 kb on - strandat 938.848 kb on + strandat 938.906 kb on + strandat 938.909 kb on - strandat 938.981 kb on - strandat 938.996 kb on + strandat 939.019 kb on + strandat 939.068 kb on - strand, within CSW01_19055at 939.088 kb on - strand, within CSW01_19055at 939.089 kb on - strand, within CSW01_19055at 939.148 kb on + strand, within CSW01_19055at 939.269 kb on - strand, within CSW01_19055at 939.316 kb on - strand, within CSW01_19055at 939.320 kb on + strand, within CSW01_19055at 939.320 kb on + strand, within CSW01_19055at 939.396 kb on - strand, within CSW01_19055at 939.475 kb on + strand, within CSW01_19055at 939.501 kb on + strand, within CSW01_19055

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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935,319 + -0.9
935,377 + +0.3
935,472 - CSW01_19045 0.20 -0.7
935,528 + CSW01_19045 0.27 -0.1
935,697 + CSW01_19045 0.47 -0.7
935,730 + CSW01_19045 0.51 -0.1
935,733 + CSW01_19045 0.51 -0.5
935,738 - CSW01_19045 0.52 +0.4
935,843 + CSW01_19045 0.65 +1.3
935,845 + CSW01_19045 0.65 +0.0
935,851 - CSW01_19045 0.66 -1.3
935,851 - CSW01_19045 0.66 +1.4
935,851 - CSW01_19045 0.66 +0.3
935,853 + CSW01_19045 0.66 +1.2
935,853 + CSW01_19045 0.66 +0.6
935,853 + CSW01_19045 0.66 +0.3
935,853 + CSW01_19045 0.66 -2.6
935,853 + CSW01_19045 0.66 -1.0
935,853 + CSW01_19045 0.66 +1.4
935,861 - CSW01_19045 0.67 +0.1
935,861 - CSW01_19045 0.67 -1.1
935,861 - CSW01_19045 0.67 +0.5
935,861 - CSW01_19045 0.67 +0.3
935,861 - CSW01_19045 0.67 +0.8
935,861 - CSW01_19045 0.67 +0.3
935,861 - CSW01_19045 0.67 +1.2
935,861 - CSW01_19045 0.67 +0.2
935,861 - CSW01_19045 0.67 +1.0
935,861 - CSW01_19045 0.67 -0.4
935,861 - CSW01_19045 0.67 +0.6
935,901 - CSW01_19045 0.72 -1.7
935,936 + CSW01_19045 0.76 -1.9
935,936 + CSW01_19045 0.76 +1.5
935,936 + CSW01_19045 0.76 -0.7
935,936 + CSW01_19045 0.76 +0.7
935,936 + CSW01_19045 0.76 -0.3
935,944 - CSW01_19045 0.77 +1.6
935,970 - CSW01_19045 0.80 +0.8
935,979 - CSW01_19045 0.81 +0.9
936,053 + CSW01_19045 0.90 -1.6
936,110 + -0.4
936,486 + +0.4
936,527 - CSW01_19050 0.11 -0.0
936,547 + CSW01_19050 0.11 +0.3
936,547 + CSW01_19050 0.11 +0.1
936,555 - CSW01_19050 0.12 +0.7
936,592 + CSW01_19050 0.13 +1.0
936,595 - CSW01_19050 0.13 -0.5
936,686 + CSW01_19050 0.17 +0.7
936,702 - CSW01_19050 0.18 +0.6
936,702 - CSW01_19050 0.18 +0.1
936,702 - CSW01_19050 0.18 -1.5
936,796 - CSW01_19050 0.22 -0.8
936,833 + CSW01_19050 0.23 -1.1
936,842 - CSW01_19050 0.24 +1.0
936,844 + CSW01_19050 0.24 +0.7
936,913 - CSW01_19050 0.27 -0.4
936,977 + CSW01_19050 0.29 -2.9
936,996 - CSW01_19050 0.30 -0.2
937,008 - CSW01_19050 0.31 +1.3
937,008 - CSW01_19050 0.31 +1.0
937,036 + CSW01_19050 0.32 +0.4
937,058 - CSW01_19050 0.33 +0.5
937,077 + CSW01_19050 0.33 +0.6
937,077 + CSW01_19050 0.33 -0.0
937,085 - CSW01_19050 0.34 -1.4
937,166 - CSW01_19050 0.37 -0.5
937,257 + CSW01_19050 0.41 +1.2
937,282 + CSW01_19050 0.42 -0.1
937,282 + CSW01_19050 0.42 +0.5
937,282 + CSW01_19050 0.42 -0.1
937,282 + CSW01_19050 0.42 +0.3
937,282 + CSW01_19050 0.42 +1.3
937,282 + CSW01_19050 0.42 +0.0
937,282 + CSW01_19050 0.42 +0.2
937,290 - CSW01_19050 0.42 -0.9
937,290 - CSW01_19050 0.42 -0.0
937,290 - CSW01_19050 0.42 -0.1
937,290 - CSW01_19050 0.42 +0.6
937,290 - CSW01_19050 0.42 -0.3
937,290 - CSW01_19050 0.42 +1.5
937,290 - CSW01_19050 0.42 +1.9
937,290 - CSW01_19050 0.42 +0.4
937,290 - CSW01_19050 0.42 +0.6
937,290 - CSW01_19050 0.42 -0.2
937,290 - CSW01_19050 0.42 +0.1
937,290 - CSW01_19050 0.42 +0.0
937,290 - CSW01_19050 0.42 +0.5
937,290 - CSW01_19050 0.42 +1.3
937,292 + CSW01_19050 0.42 +0.5
937,300 - CSW01_19050 0.43 +0.1
937,367 - CSW01_19050 0.45 -0.1
937,373 + CSW01_19050 0.46 +0.3
937,373 + CSW01_19050 0.46 +0.3
937,376 - CSW01_19050 0.46 +0.4
937,378 + CSW01_19050 0.46 +0.8
937,405 - CSW01_19050 0.47 -0.3
937,460 + CSW01_19050 0.49 +1.2
937,629 + CSW01_19050 0.56 +1.0
937,679 + CSW01_19050 0.58 -0.2
937,687 - CSW01_19050 0.59 +0.3
937,692 - CSW01_19050 0.59 -1.6
937,728 - CSW01_19050 0.60 +0.8
937,812 - CSW01_19050 0.64 -1.1
937,825 - CSW01_19050 0.64 +0.7
937,831 - CSW01_19050 0.65 +0.4
937,878 - CSW01_19050 0.67 -0.3
937,952 - CSW01_19050 0.70 +0.3
937,976 - CSW01_19050 0.71 -2.0
937,985 + CSW01_19050 0.71 +0.3
938,062 - CSW01_19050 0.74 -0.7
938,163 + CSW01_19050 0.78 +0.1
938,163 + CSW01_19050 0.78 +0.5
938,163 + CSW01_19050 0.78 +0.6
938,163 + CSW01_19050 0.78 -0.1
938,250 + CSW01_19050 0.82 -0.2
938,255 + CSW01_19050 0.82 +0.2
938,255 + CSW01_19050 0.82 +0.5
938,263 - CSW01_19050 0.83 -0.7
938,427 + CSW01_19050 0.89 +1.1
938,427 + CSW01_19050 0.89 -0.7
938,484 - -1.0
938,588 - -0.5
938,621 - -0.0
938,637 + +0.4
938,660 - -1.3
938,677 + -0.0
938,690 - +0.4
938,758 + +0.2
938,828 + -0.6
938,835 - -1.3
938,848 + +1.1
938,906 + +0.7
938,909 - -1.3
938,981 - -0.6
938,996 + +0.4
939,019 + +0.6
939,068 - CSW01_19055 0.13 -0.6
939,088 - CSW01_19055 0.14 -0.8
939,089 - CSW01_19055 0.14 -0.6
939,148 + CSW01_19055 0.18 -0.0
939,269 - CSW01_19055 0.26 +0.0
939,316 - CSW01_19055 0.29 +0.4
939,320 + CSW01_19055 0.29 -0.4
939,320 + CSW01_19055 0.29 +1.6
939,396 - CSW01_19055 0.34 -1.1
939,475 + CSW01_19055 0.39 +0.6
939,501 + CSW01_19055 0.41 +0.2

Or see this region's nucleotide sequence