Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18370

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18360 and CSW01_18365 are separated by 48 nucleotidesCSW01_18365 and CSW01_18370 are separated by 185 nucleotidesCSW01_18370 and CSW01_18375 are separated by 42 nucleotides CSW01_18360: CSW01_18360 - hypothetical protein, at 785,744 to 785,968 _18360 CSW01_18365: CSW01_18365 - LysE family translocator, at 786,017 to 786,631 _18365 CSW01_18370: CSW01_18370 - L-methionine/branched-chain amino acid transporter, at 786,817 to 788,061 _18370 CSW01_18375: CSW01_18375 - GGDEF domain-containing protein, at 788,104 to 789,084 _18375 Position (kb) 786 787 788 789Strain fitness (log2 ratio) -2 -1 0 1 2at 785.984 kb on + strandat 785.991 kb on - strandat 785.991 kb on - strandat 785.995 kb on + strandat 786.003 kb on - strandat 786.003 kb on - strandat 786.014 kb on + strandat 786.014 kb on + strandat 786.022 kb on - strandat 786.060 kb on + strandat 786.131 kb on - strand, within CSW01_18365at 786.240 kb on + strand, within CSW01_18365at 786.301 kb on + strand, within CSW01_18365at 786.411 kb on + strand, within CSW01_18365at 786.419 kb on + strand, within CSW01_18365at 786.464 kb on + strand, within CSW01_18365at 786.566 kb on - strand, within CSW01_18365at 786.884 kb on + strandat 786.944 kb on + strand, within CSW01_18370at 786.982 kb on + strand, within CSW01_18370at 786.982 kb on + strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 786.990 kb on - strand, within CSW01_18370at 787.052 kb on + strand, within CSW01_18370at 787.088 kb on - strand, within CSW01_18370at 787.126 kb on + strand, within CSW01_18370at 787.153 kb on + strand, within CSW01_18370at 787.153 kb on + strand, within CSW01_18370at 787.153 kb on + strand, within CSW01_18370at 787.155 kb on - strand, within CSW01_18370at 787.168 kb on + strand, within CSW01_18370at 787.346 kb on + strand, within CSW01_18370at 787.420 kb on - strand, within CSW01_18370at 787.542 kb on - strand, within CSW01_18370at 787.556 kb on - strand, within CSW01_18370at 787.592 kb on + strand, within CSW01_18370at 787.594 kb on + strand, within CSW01_18370at 787.594 kb on + strand, within CSW01_18370at 787.621 kb on + strand, within CSW01_18370at 787.621 kb on + strand, within CSW01_18370at 787.767 kb on - strand, within CSW01_18370at 787.795 kb on - strand, within CSW01_18370at 787.961 kb on + strandat 787.969 kb on - strandat 787.969 kb on - strandat 787.988 kb on + strandat 787.996 kb on - strandat 787.996 kb on - strandat 788.056 kb on + strandat 788.056 kb on + strandat 788.064 kb on - strandat 788.064 kb on - strandat 788.169 kb on + strandat 788.172 kb on + strandat 788.172 kb on + strandat 788.172 kb on + strandat 788.172 kb on + strandat 788.172 kb on + strandat 788.172 kb on + strandat 788.172 kb on + strandat 788.180 kb on - strandat 788.180 kb on - strandat 788.223 kb on - strand, within CSW01_18375at 788.257 kb on - strand, within CSW01_18375at 788.267 kb on - strand, within CSW01_18375at 788.370 kb on + strand, within CSW01_18375at 788.494 kb on - strand, within CSW01_18375at 788.539 kb on - strand, within CSW01_18375at 788.539 kb on - strand, within CSW01_18375at 788.605 kb on + strand, within CSW01_18375at 788.739 kb on + strand, within CSW01_18375at 788.746 kb on + strand, within CSW01_18375at 788.747 kb on - strand, within CSW01_18375at 788.948 kb on - strand, within CSW01_18375at 788.956 kb on - strand, within CSW01_18375

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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785,984 + -1.5
785,991 - -2.2
785,991 - -0.5
785,995 + -0.1
786,003 - -0.6
786,003 - -0.3
786,014 + +0.8
786,014 + +0.2
786,022 - -0.6
786,060 + -2.1
786,131 - CSW01_18365 0.19 +1.0
786,240 + CSW01_18365 0.36 -1.2
786,301 + CSW01_18365 0.46 -0.4
786,411 + CSW01_18365 0.64 +0.8
786,419 + CSW01_18365 0.65 -1.7
786,464 + CSW01_18365 0.73 -0.2
786,566 - CSW01_18365 0.89 -0.3
786,884 + -0.3
786,944 + CSW01_18370 0.10 +1.0
786,982 + CSW01_18370 0.13 +1.0
786,982 + CSW01_18370 0.13 +1.1
786,990 - CSW01_18370 0.14 +0.3
786,990 - CSW01_18370 0.14 -0.5
786,990 - CSW01_18370 0.14 -1.5
786,990 - CSW01_18370 0.14 -0.0
786,990 - CSW01_18370 0.14 -0.6
787,052 + CSW01_18370 0.19 -1.5
787,088 - CSW01_18370 0.22 +1.6
787,126 + CSW01_18370 0.25 +0.7
787,153 + CSW01_18370 0.27 +0.7
787,153 + CSW01_18370 0.27 +1.4
787,153 + CSW01_18370 0.27 -0.6
787,155 - CSW01_18370 0.27 +0.4
787,168 + CSW01_18370 0.28 -0.0
787,346 + CSW01_18370 0.42 -0.4
787,420 - CSW01_18370 0.48 -0.5
787,542 - CSW01_18370 0.58 -0.7
787,556 - CSW01_18370 0.59 -0.4
787,592 + CSW01_18370 0.62 +1.9
787,594 + CSW01_18370 0.62 -0.2
787,594 + CSW01_18370 0.62 -0.6
787,621 + CSW01_18370 0.65 +0.2
787,621 + CSW01_18370 0.65 -1.6
787,767 - CSW01_18370 0.76 +0.9
787,795 - CSW01_18370 0.79 -0.7
787,961 + -0.6
787,969 - -0.7
787,969 - -0.5
787,988 + +0.1
787,996 - +0.3
787,996 - -1.1
788,056 + +0.1
788,056 + +0.6
788,064 - +0.3
788,064 - +1.2
788,169 + +0.3
788,172 + +1.6
788,172 + +1.1
788,172 + +1.3
788,172 + -1.0
788,172 + +0.0
788,172 + -0.5
788,172 + +1.1
788,180 - -0.5
788,180 - -0.4
788,223 - CSW01_18375 0.12 +1.3
788,257 - CSW01_18375 0.16 +0.1
788,267 - CSW01_18375 0.17 +0.1
788,370 + CSW01_18375 0.27 -1.2
788,494 - CSW01_18375 0.40 +0.8
788,539 - CSW01_18375 0.44 +0.3
788,539 - CSW01_18375 0.44 -1.2
788,605 + CSW01_18375 0.51 +0.4
788,739 + CSW01_18375 0.65 -0.5
788,746 + CSW01_18375 0.65 -0.5
788,747 - CSW01_18375 0.66 -1.3
788,948 - CSW01_18375 0.86 -0.1
788,956 - CSW01_18375 0.87 +1.0

Or see this region's nucleotide sequence