Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18330

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_18325 and CSW01_18330 are separated by 31 nucleotidesCSW01_18330 and CSW01_18335 are separated by 37 nucleotidesCSW01_18335 and CSW01_18340 are separated by 137 nucleotides CSW01_18325: CSW01_18325 - cation transporter, at 777,283 to 778,236 _18325 CSW01_18330: CSW01_18330 - drug/metabolite DMT transporter permease, at 778,268 to 779,254 _18330 CSW01_18335: CSW01_18335 - sugar O-acetyltransferase, at 779,292 to 779,870 _18335 CSW01_18340: CSW01_18340 - HlyC/CorC family transporter, at 780,008 to 781,321 _18340 Position (kb) 778 779 780Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 777.553 kb on + strand, within CSW01_18325at 777.576 kb on - strand, within CSW01_18325at 777.577 kb on + strand, within CSW01_18325at 777.577 kb on + strand, within CSW01_18325at 777.606 kb on - strand, within CSW01_18325at 777.635 kb on + strand, within CSW01_18325at 777.652 kb on + strand, within CSW01_18325at 777.654 kb on + strand, within CSW01_18325at 777.655 kb on - strand, within CSW01_18325at 777.662 kb on - strand, within CSW01_18325at 777.662 kb on - strand, within CSW01_18325at 777.813 kb on - strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.863 kb on + strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.871 kb on - strand, within CSW01_18325at 777.889 kb on + strand, within CSW01_18325at 777.967 kb on - strand, within CSW01_18325at 777.988 kb on + strand, within CSW01_18325at 778.015 kb on + strand, within CSW01_18325at 778.033 kb on - strand, within CSW01_18325at 778.033 kb on - strand, within CSW01_18325at 778.033 kb on - strand, within CSW01_18325at 778.088 kb on + strand, within CSW01_18325at 778.177 kb on + strandat 778.296 kb on + strandat 778.390 kb on + strand, within CSW01_18330at 778.502 kb on + strand, within CSW01_18330at 778.567 kb on + strand, within CSW01_18330at 778.577 kb on - strand, within CSW01_18330at 778.873 kb on - strand, within CSW01_18330at 778.888 kb on - strand, within CSW01_18330at 778.894 kb on - strand, within CSW01_18330at 778.965 kb on - strand, within CSW01_18330at 778.965 kb on - strand, within CSW01_18330at 778.983 kb on + strand, within CSW01_18330at 779.001 kb on - strand, within CSW01_18330at 779.008 kb on + strand, within CSW01_18330at 779.008 kb on + strand, within CSW01_18330at 779.079 kb on + strand, within CSW01_18330at 779.079 kb on + strand, within CSW01_18330at 779.085 kb on - strand, within CSW01_18330at 779.085 kb on - strand, within CSW01_18330at 779.176 kb on + strandat 779.188 kb on + strandat 779.236 kb on + strandat 779.237 kb on - strandat 779.244 kb on - strandat 779.271 kb on - strandat 779.318 kb on + strandat 779.326 kb on - strandat 779.350 kb on + strand, within CSW01_18335at 779.522 kb on + strand, within CSW01_18335at 779.522 kb on + strand, within CSW01_18335at 779.540 kb on - strand, within CSW01_18335at 779.623 kb on - strand, within CSW01_18335at 779.726 kb on + strand, within CSW01_18335at 779.729 kb on + strand, within CSW01_18335at 779.737 kb on - strand, within CSW01_18335at 779.737 kb on - strand, within CSW01_18335at 779.739 kb on - strand, within CSW01_18335at 779.808 kb on - strand, within CSW01_18335at 779.892 kb on + strandat 779.964 kb on - strandat 780.045 kb on - strandat 780.108 kb on + strandat 780.146 kb on - strand, within CSW01_18340at 780.148 kb on + strand, within CSW01_18340at 780.156 kb on - strand, within CSW01_18340at 780.238 kb on + strand, within CSW01_18340at 780.246 kb on - strand, within CSW01_18340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
remove
777,553 + CSW01_18325 0.28 +0.4
777,576 - CSW01_18325 0.31 +0.3
777,577 + CSW01_18325 0.31 +0.1
777,577 + CSW01_18325 0.31 -0.1
777,606 - CSW01_18325 0.34 -2.8
777,635 + CSW01_18325 0.37 +0.3
777,652 + CSW01_18325 0.39 -0.6
777,654 + CSW01_18325 0.39 -0.2
777,655 - CSW01_18325 0.39 -0.2
777,662 - CSW01_18325 0.40 -0.6
777,662 - CSW01_18325 0.40 -0.6
777,813 - CSW01_18325 0.56 -1.5
777,863 + CSW01_18325 0.61 -0.7
777,863 + CSW01_18325 0.61 +0.6
777,863 + CSW01_18325 0.61 -0.6
777,863 + CSW01_18325 0.61 -1.2
777,871 - CSW01_18325 0.62 -2.1
777,871 - CSW01_18325 0.62 +0.9
777,871 - CSW01_18325 0.62 -2.1
777,871 - CSW01_18325 0.62 +0.1
777,889 + CSW01_18325 0.64 +0.5
777,967 - CSW01_18325 0.72 -1.6
777,988 + CSW01_18325 0.74 -0.2
778,015 + CSW01_18325 0.77 -0.5
778,033 - CSW01_18325 0.79 -1.4
778,033 - CSW01_18325 0.79 -1.1
778,033 - CSW01_18325 0.79 -0.1
778,088 + CSW01_18325 0.84 -0.0
778,177 + +0.3
778,296 + -1.3
778,390 + CSW01_18330 0.12 -1.2
778,502 + CSW01_18330 0.24 +0.2
778,567 + CSW01_18330 0.30 -1.1
778,577 - CSW01_18330 0.31 -0.4
778,873 - CSW01_18330 0.61 -0.2
778,888 - CSW01_18330 0.63 +1.3
778,894 - CSW01_18330 0.63 -0.7
778,965 - CSW01_18330 0.71 -0.3
778,965 - CSW01_18330 0.71 -1.3
778,983 + CSW01_18330 0.72 +1.2
779,001 - CSW01_18330 0.74 -0.5
779,008 + CSW01_18330 0.75 -0.4
779,008 + CSW01_18330 0.75 -0.4
779,079 + CSW01_18330 0.82 -0.4
779,079 + CSW01_18330 0.82 +0.9
779,085 - CSW01_18330 0.83 +0.2
779,085 - CSW01_18330 0.83 -0.4
779,176 + -0.4
779,188 + -0.7
779,236 + +1.0
779,237 - +0.1
779,244 - -0.2
779,271 - -0.9
779,318 + -0.2
779,326 - +0.3
779,350 + CSW01_18335 0.10 +0.2
779,522 + CSW01_18335 0.40 -0.9
779,522 + CSW01_18335 0.40 -0.4
779,540 - CSW01_18335 0.43 +2.6
779,623 - CSW01_18335 0.57 -0.1
779,726 + CSW01_18335 0.75 +0.5
779,729 + CSW01_18335 0.75 -3.4
779,737 - CSW01_18335 0.77 +2.0
779,737 - CSW01_18335 0.77 -3.0
779,739 - CSW01_18335 0.77 -0.5
779,808 - CSW01_18335 0.89 +1.4
779,892 + -0.6
779,964 - -3.3
780,045 - -2.5
780,108 + -2.3
780,146 - CSW01_18340 0.11 -0.3
780,148 + CSW01_18340 0.11 -1.0
780,156 - CSW01_18340 0.11 +0.3
780,238 + CSW01_18340 0.18 -0.3
780,246 - CSW01_18340 0.18 -0.5

Or see this region's nucleotide sequence