Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17535

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17530 and CSW01_17535 are separated by 97 nucleotidesCSW01_17535 and CSW01_17540 overlap by 50 nucleotides CSW01_17530: CSW01_17530 - anaerobic C4-dicarboxylate transporter DcuC, at 598,894 to 600,273 _17530 CSW01_17535: CSW01_17535 - L-serine ammonia-lyase, at 600,371 to 601,801 _17535 CSW01_17540: CSW01_17540 - sodium:solute symporter, at 601,752 to 603,293 _17540 Position (kb) 600 601 602Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 599.389 kb on + strand, within CSW01_17530at 599.511 kb on - strand, within CSW01_17530at 599.638 kb on + strand, within CSW01_17530at 599.720 kb on + strand, within CSW01_17530at 599.800 kb on + strand, within CSW01_17530at 599.800 kb on + strand, within CSW01_17530at 599.832 kb on + strand, within CSW01_17530at 599.840 kb on - strand, within CSW01_17530at 599.911 kb on + strand, within CSW01_17530at 599.911 kb on + strand, within CSW01_17530at 599.919 kb on - strand, within CSW01_17530at 600.174 kb on - strandat 600.208 kb on - strandat 600.229 kb on - strandat 600.242 kb on + strandat 600.242 kb on + strandat 600.242 kb on + strandat 600.245 kb on + strandat 600.355 kb on - strandat 600.517 kb on - strand, within CSW01_17535at 600.562 kb on + strand, within CSW01_17535at 600.610 kb on + strand, within CSW01_17535at 600.610 kb on + strand, within CSW01_17535at 600.610 kb on + strand, within CSW01_17535at 600.610 kb on + strand, within CSW01_17535at 600.618 kb on - strand, within CSW01_17535at 600.618 kb on - strand, within CSW01_17535at 600.620 kb on - strand, within CSW01_17535at 600.686 kb on - strand, within CSW01_17535at 600.686 kb on - strand, within CSW01_17535at 600.723 kb on + strand, within CSW01_17535at 600.822 kb on - strand, within CSW01_17535at 600.866 kb on + strand, within CSW01_17535at 600.905 kb on - strand, within CSW01_17535at 600.949 kb on + strand, within CSW01_17535at 600.957 kb on - strand, within CSW01_17535at 600.961 kb on - strand, within CSW01_17535at 601.208 kb on + strand, within CSW01_17535at 601.244 kb on - strand, within CSW01_17535at 601.314 kb on + strand, within CSW01_17535at 601.498 kb on - strand, within CSW01_17535at 601.581 kb on + strand, within CSW01_17535at 601.589 kb on - strand, within CSW01_17535at 601.758 kb on - strandat 602.083 kb on - strand, within CSW01_17540at 602.112 kb on + strand, within CSW01_17540at 602.143 kb on - strand, within CSW01_17540at 602.199 kb on + strand, within CSW01_17540at 602.215 kb on + strand, within CSW01_17540at 602.223 kb on + strand, within CSW01_17540at 602.312 kb on - strand, within CSW01_17540at 602.396 kb on + strand, within CSW01_17540at 602.622 kb on + strand, within CSW01_17540at 602.759 kb on - strand, within CSW01_17540

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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599,389 + CSW01_17530 0.36 -0.7
599,511 - CSW01_17530 0.45 +2.2
599,638 + CSW01_17530 0.54 +0.7
599,720 + CSW01_17530 0.60 -0.9
599,800 + CSW01_17530 0.66 +0.9
599,800 + CSW01_17530 0.66 -0.9
599,832 + CSW01_17530 0.68 +0.4
599,840 - CSW01_17530 0.69 -0.2
599,911 + CSW01_17530 0.74 -1.5
599,911 + CSW01_17530 0.74 +0.8
599,919 - CSW01_17530 0.74 -0.1
600,174 - -2.0
600,208 - +0.3
600,229 - +0.7
600,242 + -0.4
600,242 + -0.3
600,242 + +1.4
600,245 + +0.7
600,355 - +1.6
600,517 - CSW01_17535 0.10 -0.9
600,562 + CSW01_17535 0.13 +0.6
600,610 + CSW01_17535 0.17 +0.4
600,610 + CSW01_17535 0.17 +0.1
600,610 + CSW01_17535 0.17 +1.6
600,610 + CSW01_17535 0.17 -0.2
600,618 - CSW01_17535 0.17 -0.2
600,618 - CSW01_17535 0.17 -0.2
600,620 - CSW01_17535 0.17 -0.9
600,686 - CSW01_17535 0.22 +0.1
600,686 - CSW01_17535 0.22 +1.5
600,723 + CSW01_17535 0.25 +0.2
600,822 - CSW01_17535 0.32 -3.1
600,866 + CSW01_17535 0.35 +0.7
600,905 - CSW01_17535 0.37 -1.1
600,949 + CSW01_17535 0.40 +0.9
600,957 - CSW01_17535 0.41 -1.4
600,961 - CSW01_17535 0.41 +0.4
601,208 + CSW01_17535 0.58 +1.4
601,244 - CSW01_17535 0.61 +0.8
601,314 + CSW01_17535 0.66 +1.0
601,498 - CSW01_17535 0.79 -0.4
601,581 + CSW01_17535 0.85 -1.4
601,589 - CSW01_17535 0.85 +0.5
601,758 - -2.0
602,083 - CSW01_17540 0.21 -2.5
602,112 + CSW01_17540 0.23 +0.5
602,143 - CSW01_17540 0.25 -0.2
602,199 + CSW01_17540 0.29 -1.0
602,215 + CSW01_17540 0.30 -0.3
602,223 + CSW01_17540 0.31 -0.1
602,312 - CSW01_17540 0.36 +0.4
602,396 + CSW01_17540 0.42 +0.3
602,622 + CSW01_17540 0.56 +0.1
602,759 - CSW01_17540 0.65 -0.2

Or see this region's nucleotide sequence