Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17315 and CSW01_17320 overlap by 2 nucleotides CSW01_17320 and CSW01_17325 are separated by 483 nucleotides
CSW01_17315: CSW01_17315 - DNA-binding protein, at 553,709 to 554,704
_17315
CSW01_17320: CSW01_17320 - hypothetical protein, at 554,703 to 554,813
_17320
CSW01_17325: CSW01_17325 - transaldolase, at 555,297 to 556,247
_17325
Position (kb) 554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 553.749 kb on - strand at 553.822 kb on - strand, within CSW01_17315 at 553.838 kb on + strand, within CSW01_17315 at 554.106 kb on - strand, within CSW01_17315 at 554.108 kb on + strand, within CSW01_17315 at 554.232 kb on + strand, within CSW01_17315 at 554.232 kb on + strand, within CSW01_17315 at 554.232 kb on + strand, within CSW01_17315 at 554.232 kb on + strand, within CSW01_17315 at 554.232 kb on + strand, within CSW01_17315 at 554.232 kb on + strand, within CSW01_17315 at 554.232 kb on + strand, within CSW01_17315 at 554.232 kb on + strand, within CSW01_17315 at 554.232 kb on + strand, within CSW01_17315 at 554.240 kb on - strand, within CSW01_17315 at 554.240 kb on - strand, within CSW01_17315 at 554.240 kb on - strand, within CSW01_17315 at 554.240 kb on - strand, within CSW01_17315 at 554.240 kb on - strand, within CSW01_17315 at 554.240 kb on - strand, within CSW01_17315 at 554.240 kb on - strand, within CSW01_17315 at 554.240 kb on - strand, within CSW01_17315 at 554.300 kb on + strand, within CSW01_17315 at 554.340 kb on - strand, within CSW01_17315 at 554.352 kb on - strand, within CSW01_17315 at 554.420 kb on - strand, within CSW01_17315 at 554.420 kb on - strand, within CSW01_17315 at 554.481 kb on + strand, within CSW01_17315 at 554.489 kb on - strand, within CSW01_17315 at 554.612 kb on + strand at 554.620 kb on + strand at 554.665 kb on + strand at 554.727 kb on + strand, within CSW01_17320 at 554.744 kb on + strand, within CSW01_17320 at 554.750 kb on - strand, within CSW01_17320 at 554.750 kb on - strand, within CSW01_17320 at 554.752 kb on - strand, within CSW01_17320 at 554.879 kb on - strand at 554.879 kb on - strand at 554.882 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.085 kb on + strand at 555.093 kb on - strand at 555.093 kb on - strand at 555.093 kb on - strand at 555.093 kb on - strand at 555.173 kb on + strand at 555.250 kb on + strand at 555.395 kb on + strand, within CSW01_17325 at 555.395 kb on + strand, within CSW01_17325 at 555.413 kb on + strand, within CSW01_17325 at 555.440 kb on - strand, within CSW01_17325 at 555.444 kb on + strand, within CSW01_17325 at 555.459 kb on + strand, within CSW01_17325 at 555.504 kb on + strand, within CSW01_17325 at 555.512 kb on - strand, within CSW01_17325 at 555.514 kb on + strand, within CSW01_17325 at 555.751 kb on + strand, within CSW01_17325 at 555.765 kb on + strand, within CSW01_17325 at 555.767 kb on + strand, within CSW01_17325
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B remove 553,749 - +0.3 553,822 - CSW01_17315 0.11 +0.2 553,838 + CSW01_17315 0.13 -0.0 554,106 - CSW01_17315 0.40 -1.7 554,108 + CSW01_17315 0.40 +1.0 554,232 + CSW01_17315 0.53 -1.3 554,232 + CSW01_17315 0.53 +1.2 554,232 + CSW01_17315 0.53 +0.4 554,232 + CSW01_17315 0.53 +2.3 554,232 + CSW01_17315 0.53 -0.5 554,232 + CSW01_17315 0.53 -1.3 554,232 + CSW01_17315 0.53 +0.5 554,232 + CSW01_17315 0.53 +0.5 554,232 + CSW01_17315 0.53 +0.4 554,240 - CSW01_17315 0.53 +0.8 554,240 - CSW01_17315 0.53 -1.0 554,240 - CSW01_17315 0.53 -2.3 554,240 - CSW01_17315 0.53 -1.8 554,240 - CSW01_17315 0.53 -0.9 554,240 - CSW01_17315 0.53 +0.7 554,240 - CSW01_17315 0.53 -0.0 554,240 - CSW01_17315 0.53 +0.3 554,300 + CSW01_17315 0.59 +0.4 554,340 - CSW01_17315 0.63 +0.1 554,352 - CSW01_17315 0.65 -0.4 554,420 - CSW01_17315 0.71 -3.6 554,420 - CSW01_17315 0.71 -1.3 554,481 + CSW01_17315 0.78 -1.0 554,489 - CSW01_17315 0.78 +0.1 554,612 + +1.3 554,620 + -0.4 554,665 + -0.1 554,727 + CSW01_17320 0.22 -0.6 554,744 + CSW01_17320 0.37 +0.6 554,750 - CSW01_17320 0.42 +0.1 554,750 - CSW01_17320 0.42 -0.2 554,752 - CSW01_17320 0.44 +0.9 554,879 - -1.5 554,879 - -1.3 554,882 + -0.1 555,085 + -0.3 555,085 + -0.0 555,085 + -1.2 555,085 + -0.1 555,085 + +0.8 555,085 + -0.7 555,085 + -0.4 555,085 + -0.2 555,085 + +1.9 555,093 - +1.0 555,093 - +1.2 555,093 - +0.5 555,093 - -2.1 555,173 + +0.3 555,250 + +0.1 555,395 + CSW01_17325 0.10 -0.7 555,395 + CSW01_17325 0.10 +0.3 555,413 + CSW01_17325 0.12 +0.6 555,440 - CSW01_17325 0.15 -0.9 555,444 + CSW01_17325 0.15 -1.3 555,459 + CSW01_17325 0.17 -0.1 555,504 + CSW01_17325 0.22 -1.3 555,512 - CSW01_17325 0.23 +0.2 555,514 + CSW01_17325 0.23 +1.1 555,751 + CSW01_17325 0.48 -2.3 555,765 + CSW01_17325 0.49 -1.3 555,767 + CSW01_17325 0.49 -0.8
Or see this region's nucleotide sequence