Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15875

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15865 and CSW01_15870 are separated by 127 nucleotidesCSW01_15870 and CSW01_15875 overlap by 4 nucleotidesCSW01_15875 and CSW01_15880 are separated by 228 nucleotidesCSW01_15880 and CSW01_15885 are separated by 3 nucleotidesCSW01_15885 and CSW01_15890 are separated by 59 nucleotides CSW01_15865: CSW01_15865 - DUF3465 domain-containing protein, at 347,256 to 347,681 _15865 CSW01_15870: CSW01_15870 - type II toxin-antitoxin system RelE/ParE family toxin, at 347,809 to 348,108 _15870 CSW01_15875: CSW01_15875 - type II toxin-antitoxin system ParD family antitoxin, at 348,105 to 348,347 _15875 CSW01_15880: CSW01_15880 - hypothetical protein, at 348,576 to 349,154 _15880 CSW01_15885: CSW01_15885 - DUF3265 domain-containing protein, at 349,158 to 349,268 _15885 CSW01_15890: CSW01_15890 - hypothetical protein, at 349,328 to 349,489 _15890 Position (kb) 348 349Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 347.389 kb on + strand, within CSW01_15865at 347.547 kb on - strand, within CSW01_15865at 347.750 kb on + strandat 347.750 kb on + strandat 347.750 kb on + strandat 347.750 kb on + strandat 347.779 kb on - strandat 347.779 kb on - strandat 347.842 kb on + strand, within CSW01_15870at 348.479 kb on + strandat 348.587 kb on + strandat 348.666 kb on - strand, within CSW01_15880at 348.673 kb on + strand, within CSW01_15880at 348.676 kb on - strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.738 kb on + strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.746 kb on - strand, within CSW01_15880at 348.771 kb on + strand, within CSW01_15880at 348.816 kb on - strand, within CSW01_15880at 348.835 kb on - strand, within CSW01_15880at 348.835 kb on - strand, within CSW01_15880at 348.898 kb on + strand, within CSW01_15880at 348.915 kb on + strand, within CSW01_15880at 348.921 kb on - strand, within CSW01_15880at 348.942 kb on + strand, within CSW01_15880at 348.947 kb on + strand, within CSW01_15880at 349.020 kb on + strand, within CSW01_15880at 349.040 kb on - strand, within CSW01_15880at 349.054 kb on - strand, within CSW01_15880at 349.099 kb on + strandat 349.099 kb on + strandat 349.099 kb on + strandat 349.107 kb on - strandat 349.154 kb on + strandat 349.157 kb on + strandat 349.166 kb on - strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.168 kb on + strandat 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.176 kb on - strand, within CSW01_15885at 349.227 kb on + strand, within CSW01_15885at 349.239 kb on + strand, within CSW01_15885at 349.239 kb on + strand, within CSW01_15885at 349.239 kb on + strand, within CSW01_15885at 349.246 kb on + strand, within CSW01_15885at 349.247 kb on - strand, within CSW01_15885at 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.269 kb on - strandat 349.271 kb on - strandat 349.271 kb on - strandat 349.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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347,389 + CSW01_15865 0.31 -0.5
347,547 - CSW01_15865 0.68 -0.5
347,750 + -0.3
347,750 + -0.2
347,750 + +0.1
347,750 + +0.6
347,779 - +0.5
347,779 - -1.2
347,842 + CSW01_15870 0.11 -0.6
348,479 + +0.4
348,587 + +0.5
348,666 - CSW01_15880 0.16 +0.0
348,673 + CSW01_15880 0.17 +0.8
348,676 - CSW01_15880 0.17 +0.2
348,738 + CSW01_15880 0.28 +0.4
348,738 + CSW01_15880 0.28 +0.7
348,738 + CSW01_15880 0.28 -0.9
348,738 + CSW01_15880 0.28 -0.2
348,738 + CSW01_15880 0.28 -0.0
348,738 + CSW01_15880 0.28 -0.4
348,746 - CSW01_15880 0.29 +0.1
348,746 - CSW01_15880 0.29 -1.2
348,746 - CSW01_15880 0.29 -1.3
348,746 - CSW01_15880 0.29 -0.3
348,746 - CSW01_15880 0.29 +0.5
348,746 - CSW01_15880 0.29 -0.7
348,746 - CSW01_15880 0.29 +0.5
348,746 - CSW01_15880 0.29 +0.0
348,771 + CSW01_15880 0.34 -1.0
348,816 - CSW01_15880 0.41 -0.0
348,835 - CSW01_15880 0.45 +0.3
348,835 - CSW01_15880 0.45 -0.7
348,898 + CSW01_15880 0.56 +1.0
348,915 + CSW01_15880 0.59 +0.1
348,921 - CSW01_15880 0.60 -0.3
348,942 + CSW01_15880 0.63 -1.7
348,947 + CSW01_15880 0.64 -0.6
349,020 + CSW01_15880 0.77 +0.1
349,040 - CSW01_15880 0.80 +0.8
349,054 - CSW01_15880 0.83 +0.1
349,099 + +0.1
349,099 + +0.2
349,099 + +0.7
349,107 - -0.1
349,154 + -0.7
349,157 + +0.8
349,166 - -0.1
349,168 + -0.2
349,168 + -1.5
349,168 + +0.7
349,168 + +1.7
349,168 + -1.1
349,168 + -1.6
349,168 + +1.9
349,168 + +0.2
349,168 + -0.7
349,176 - CSW01_15885 0.16 -0.3
349,176 - CSW01_15885 0.16 +1.2
349,176 - CSW01_15885 0.16 -0.4
349,176 - CSW01_15885 0.16 +0.4
349,176 - CSW01_15885 0.16 -1.6
349,176 - CSW01_15885 0.16 -0.5
349,176 - CSW01_15885 0.16 -0.8
349,176 - CSW01_15885 0.16 -0.2
349,227 + CSW01_15885 0.62 -0.2
349,239 + CSW01_15885 0.73 +0.3
349,239 + CSW01_15885 0.73 +0.9
349,239 + CSW01_15885 0.73 +1.7
349,246 + CSW01_15885 0.79 -0.2
349,247 - CSW01_15885 0.80 -0.2
349,269 - -3.4
349,269 - +0.1
349,269 - -0.0
349,269 - +0.1
349,269 - +0.6
349,269 - -1.3
349,269 - +0.2
349,269 - -1.5
349,269 - -0.9
349,271 - -1.9
349,271 - +0.8
349,271 - +0.3

Or see this region's nucleotide sequence