Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15045

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15040 and CSW01_15045 are separated by 174 nucleotidesCSW01_15045 and CSW01_15050 are separated by 77 nucleotides CSW01_15040: CSW01_15040 - ATP-binding protein, at 227,212 to 229,158 _15040 CSW01_15045: CSW01_15045 - hypothetical protein, at 229,333 to 230,382 _15045 CSW01_15050: CSW01_15050 - Na+/H+ antiporter, at 230,460 to 232,049 _15050 Position (kb) 229 230 231Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 228.524 kb on + strand, within CSW01_15040at 228.532 kb on - strand, within CSW01_15040at 228.688 kb on - strand, within CSW01_15040at 228.787 kb on - strand, within CSW01_15040at 228.790 kb on + strand, within CSW01_15040at 228.808 kb on + strand, within CSW01_15040at 228.808 kb on + strand, within CSW01_15040at 228.911 kb on - strand, within CSW01_15040at 228.917 kb on - strand, within CSW01_15040at 228.924 kb on + strand, within CSW01_15040at 229.004 kb on + strandat 229.079 kb on + strandat 229.084 kb on + strandat 229.087 kb on - strandat 229.205 kb on + strandat 229.234 kb on + strandat 229.256 kb on - strandat 229.261 kb on + strandat 229.263 kb on + strandat 229.271 kb on - strandat 229.271 kb on - strandat 229.271 kb on - strandat 229.271 kb on - strandat 229.327 kb on - strandat 229.335 kb on + strandat 229.358 kb on + strandat 229.459 kb on + strand, within CSW01_15045at 229.481 kb on - strand, within CSW01_15045at 229.596 kb on + strand, within CSW01_15045at 229.702 kb on + strand, within CSW01_15045at 229.796 kb on - strand, within CSW01_15045at 229.796 kb on - strand, within CSW01_15045at 229.799 kb on + strand, within CSW01_15045at 229.799 kb on + strand, within CSW01_15045at 229.889 kb on - strand, within CSW01_15045at 229.889 kb on - strand, within CSW01_15045at 230.068 kb on - strand, within CSW01_15045at 230.085 kb on + strand, within CSW01_15045at 230.085 kb on + strand, within CSW01_15045at 230.197 kb on + strand, within CSW01_15045at 230.258 kb on + strand, within CSW01_15045at 230.309 kb on + strandat 230.309 kb on - strandat 230.317 kb on - strandat 230.350 kb on - strandat 230.417 kb on - strandat 230.488 kb on + strandat 230.509 kb on + strandat 230.517 kb on - strandat 230.541 kb on + strandat 230.586 kb on + strandat 230.586 kb on + strandat 230.586 kb on + strandat 230.594 kb on - strandat 230.594 kb on - strandat 230.720 kb on - strand, within CSW01_15050at 230.720 kb on - strand, within CSW01_15050at 230.727 kb on + strand, within CSW01_15050at 230.758 kb on + strand, within CSW01_15050at 230.761 kb on - strand, within CSW01_15050at 230.807 kb on + strand, within CSW01_15050at 230.824 kb on - strand, within CSW01_15050at 230.865 kb on + strand, within CSW01_15050at 230.999 kb on + strand, within CSW01_15050at 231.079 kb on + strand, within CSW01_15050at 231.084 kb on + strand, within CSW01_15050at 231.087 kb on - strand, within CSW01_15050at 231.087 kb on - strand, within CSW01_15050at 231.218 kb on + strand, within CSW01_15050at 231.218 kb on + strand, within CSW01_15050at 231.221 kb on - strand, within CSW01_15050at 231.226 kb on - strand, within CSW01_15050at 231.226 kb on - strand, within CSW01_15050at 231.228 kb on + strand, within CSW01_15050at 231.297 kb on + strand, within CSW01_15050at 231.338 kb on - strand, within CSW01_15050at 231.344 kb on - strand, within CSW01_15050

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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228,524 + CSW01_15040 0.67 +0.4
228,532 - CSW01_15040 0.68 -2.7
228,688 - CSW01_15040 0.76 -0.7
228,787 - CSW01_15040 0.81 -1.2
228,790 + CSW01_15040 0.81 -0.1
228,808 + CSW01_15040 0.82 -0.3
228,808 + CSW01_15040 0.82 -0.2
228,911 - CSW01_15040 0.87 +0.4
228,917 - CSW01_15040 0.88 -0.6
228,924 + CSW01_15040 0.88 +0.7
229,004 + -1.6
229,079 + +0.6
229,084 + +0.9
229,087 - -0.2
229,205 + +0.4
229,234 + -0.4
229,256 - +0.2
229,261 + +0.3
229,263 + -0.7
229,271 - -0.0
229,271 - +1.0
229,271 - -0.3
229,271 - -0.3
229,327 - -1.1
229,335 + +0.7
229,358 + -0.3
229,459 + CSW01_15045 0.12 +0.5
229,481 - CSW01_15045 0.14 +1.4
229,596 + CSW01_15045 0.25 +0.4
229,702 + CSW01_15045 0.35 -0.2
229,796 - CSW01_15045 0.44 +0.9
229,796 - CSW01_15045 0.44 -0.7
229,799 + CSW01_15045 0.44 -2.0
229,799 + CSW01_15045 0.44 -0.3
229,889 - CSW01_15045 0.53 +1.0
229,889 - CSW01_15045 0.53 +0.5
230,068 - CSW01_15045 0.70 +0.2
230,085 + CSW01_15045 0.72 +4.4
230,085 + CSW01_15045 0.72 -0.2
230,197 + CSW01_15045 0.82 +0.1
230,258 + CSW01_15045 0.88 +0.1
230,309 + -0.4
230,309 - +0.6
230,317 - +0.0
230,350 - -1.2
230,417 - +0.9
230,488 + -0.0
230,509 + -0.3
230,517 - -0.5
230,541 + +0.3
230,586 + -0.5
230,586 + -0.4
230,586 + +2.3
230,594 - +0.1
230,594 - -0.8
230,720 - CSW01_15050 0.16 +0.2
230,720 - CSW01_15050 0.16 +1.0
230,727 + CSW01_15050 0.17 +0.6
230,758 + CSW01_15050 0.19 +0.7
230,761 - CSW01_15050 0.19 -0.5
230,807 + CSW01_15050 0.22 -1.0
230,824 - CSW01_15050 0.23 +1.6
230,865 + CSW01_15050 0.25 -1.1
230,999 + CSW01_15050 0.34 -2.0
231,079 + CSW01_15050 0.39 -0.7
231,084 + CSW01_15050 0.39 +0.8
231,087 - CSW01_15050 0.39 +0.2
231,087 - CSW01_15050 0.39 -0.2
231,218 + CSW01_15050 0.48 -0.0
231,218 + CSW01_15050 0.48 -0.4
231,221 - CSW01_15050 0.48 +0.2
231,226 - CSW01_15050 0.48 +0.6
231,226 - CSW01_15050 0.48 +2.1
231,228 + CSW01_15050 0.48 +0.5
231,297 + CSW01_15050 0.53 +0.2
231,338 - CSW01_15050 0.55 -0.7
231,344 - CSW01_15050 0.56 +1.6

Or see this region's nucleotide sequence