Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14315

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14305 and CSW01_14310 are separated by 41 nucleotidesCSW01_14310 and CSW01_14315 overlap by 11 nucleotidesCSW01_14315 and CSW01_14320 are separated by 9 nucleotides CSW01_14305: CSW01_14305 - hypothetical protein, at 62,115 to 62,294 _14305 CSW01_14310: CSW01_14310 - DUF1722 domain-containing protein, at 62,336 to 63,304 _14310 CSW01_14315: CSW01_14315 - helix-turn-helix-type transcriptional regulator, at 63,294 to 64,091 _14315 CSW01_14320: CSW01_14320 - deoxyribodipyrimidine photo-lyase, at 64,101 to 65,510 _14320 Position (kb) 63 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 62.336 kb on + strandat 62.346 kb on + strandat 62.382 kb on + strandat 62.446 kb on + strand, within CSW01_14310at 62.531 kb on - strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.597 kb on + strand, within CSW01_14310at 62.605 kb on + strand, within CSW01_14310at 62.605 kb on - strand, within CSW01_14310at 62.615 kb on - strand, within CSW01_14310at 62.625 kb on - strand, within CSW01_14310at 62.648 kb on - strand, within CSW01_14310at 62.675 kb on - strand, within CSW01_14310at 62.925 kb on + strand, within CSW01_14310at 62.933 kb on - strand, within CSW01_14310at 62.951 kb on + strand, within CSW01_14310at 63.032 kb on + strand, within CSW01_14310at 63.040 kb on - strand, within CSW01_14310at 63.040 kb on - strand, within CSW01_14310at 63.078 kb on + strand, within CSW01_14310at 63.153 kb on - strand, within CSW01_14310at 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.258 kb on + strandat 63.265 kb on + strandat 63.265 kb on + strandat 63.265 kb on + strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.266 kb on - strandat 63.267 kb on - strandat 63.289 kb on + strandat 63.361 kb on + strandat 63.361 kb on + strandat 63.361 kb on + strandat 63.369 kb on - strandat 63.369 kb on - strandat 63.369 kb on - strandat 63.369 kb on - strandat 63.391 kb on - strand, within CSW01_14315at 63.391 kb on - strand, within CSW01_14315at 63.441 kb on - strand, within CSW01_14315at 63.477 kb on + strand, within CSW01_14315at 63.553 kb on + strand, within CSW01_14315at 63.558 kb on + strand, within CSW01_14315at 63.570 kb on - strand, within CSW01_14315at 63.572 kb on + strand, within CSW01_14315at 63.572 kb on + strand, within CSW01_14315at 63.608 kb on - strand, within CSW01_14315at 63.611 kb on + strand, within CSW01_14315at 63.663 kb on - strand, within CSW01_14315at 63.676 kb on + strand, within CSW01_14315at 63.749 kb on - strand, within CSW01_14315at 63.754 kb on + strand, within CSW01_14315at 63.813 kb on + strand, within CSW01_14315at 63.813 kb on + strand, within CSW01_14315at 63.836 kb on + strand, within CSW01_14315at 63.870 kb on + strand, within CSW01_14315at 63.870 kb on + strand, within CSW01_14315at 63.870 kb on + strand, within CSW01_14315at 63.878 kb on - strand, within CSW01_14315at 63.908 kb on + strand, within CSW01_14315at 63.908 kb on + strand, within CSW01_14315at 63.908 kb on + strand, within CSW01_14315at 63.908 kb on + strand, within CSW01_14315at 63.916 kb on - strand, within CSW01_14315at 63.916 kb on - strand, within CSW01_14315at 64.052 kb on + strandat 64.052 kb on + strandat 64.069 kb on + strandat 64.109 kb on + strandat 64.117 kb on - strandat 64.133 kb on - strandat 64.135 kb on + strandat 64.161 kb on + strandat 64.161 kb on + strandat 64.161 kb on + strandat 64.166 kb on + strandat 64.174 kb on - strandat 64.177 kb on - strandat 64.204 kb on + strandat 64.204 kb on + strandat 64.204 kb on + strandat 64.211 kb on - strandat 64.212 kb on - strandat 64.212 kb on - strandat 64.212 kb on - strandat 64.228 kb on + strandat 64.228 kb on + strandat 64.236 kb on - strandat 64.472 kb on - strand, within CSW01_14320at 64.473 kb on - strand, within CSW01_14320at 64.519 kb on + strand, within CSW01_14320at 64.554 kb on + strand, within CSW01_14320at 64.564 kb on - strand, within CSW01_14320at 64.576 kb on + strand, within CSW01_14320at 64.588 kb on - strand, within CSW01_14320at 64.682 kb on + strand, within CSW01_14320at 64.682 kb on + strand, within CSW01_14320at 64.690 kb on - strand, within CSW01_14320at 64.690 kb on - strand, within CSW01_14320at 64.699 kb on - strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.715 kb on + strand, within CSW01_14320at 64.717 kb on + strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.723 kb on - strand, within CSW01_14320at 64.774 kb on - strand, within CSW01_14320at 64.898 kb on + strand, within CSW01_14320at 64.906 kb on + strand, within CSW01_14320at 64.937 kb on - strand, within CSW01_14320at 64.939 kb on - strand, within CSW01_14320at 64.977 kb on - strand, within CSW01_14320at 65.050 kb on - strand, within CSW01_14320at 65.058 kb on + strand, within CSW01_14320

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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62,336 + +0.4
62,346 + +1.1
62,382 + +0.2
62,446 + CSW01_14310 0.11 -1.3
62,531 - CSW01_14310 0.20 +0.7
62,597 + CSW01_14310 0.27 +0.0
62,597 + CSW01_14310 0.27 +0.0
62,597 + CSW01_14310 0.27 +0.1
62,597 + CSW01_14310 0.27 -1.4
62,605 + CSW01_14310 0.28 +0.4
62,605 - CSW01_14310 0.28 +0.6
62,615 - CSW01_14310 0.29 +0.7
62,625 - CSW01_14310 0.30 -0.4
62,648 - CSW01_14310 0.32 +1.5
62,675 - CSW01_14310 0.35 -0.4
62,925 + CSW01_14310 0.61 -0.6
62,933 - CSW01_14310 0.62 -0.5
62,951 + CSW01_14310 0.63 +0.9
63,032 + CSW01_14310 0.72 +0.4
63,040 - CSW01_14310 0.73 -2.0
63,040 - CSW01_14310 0.73 -0.3
63,078 + CSW01_14310 0.77 +0.3
63,153 - CSW01_14310 0.84 -0.1
63,258 + +2.2
63,258 + +0.8
63,258 + +0.8
63,258 + -0.2
63,258 + +0.4
63,258 + +0.8
63,258 + -0.7
63,265 + -0.5
63,265 + +0.1
63,265 + -0.3
63,266 - -0.3
63,266 - -0.5
63,266 - -0.8
63,266 - +2.3
63,266 - +0.4
63,267 - +0.5
63,289 + +0.3
63,361 + +0.2
63,361 + -0.4
63,361 + -0.2
63,369 - -0.0
63,369 - +0.9
63,369 - +0.8
63,369 - +2.0
63,391 - CSW01_14315 0.12 -0.5
63,391 - CSW01_14315 0.12 -1.1
63,441 - CSW01_14315 0.18 +1.8
63,477 + CSW01_14315 0.23 -0.5
63,553 + CSW01_14315 0.32 -1.5
63,558 + CSW01_14315 0.33 +0.3
63,570 - CSW01_14315 0.35 -1.4
63,572 + CSW01_14315 0.35 +0.3
63,572 + CSW01_14315 0.35 -1.1
63,608 - CSW01_14315 0.39 -3.1
63,611 + CSW01_14315 0.40 -0.3
63,663 - CSW01_14315 0.46 -0.4
63,676 + CSW01_14315 0.48 -0.7
63,749 - CSW01_14315 0.57 +0.3
63,754 + CSW01_14315 0.58 -0.4
63,813 + CSW01_14315 0.65 -1.9
63,813 + CSW01_14315 0.65 -2.7
63,836 + CSW01_14315 0.68 -0.1
63,870 + CSW01_14315 0.72 -0.2
63,870 + CSW01_14315 0.72 +0.5
63,870 + CSW01_14315 0.72 -1.9
63,878 - CSW01_14315 0.73 -1.6
63,908 + CSW01_14315 0.77 +0.8
63,908 + CSW01_14315 0.77 -0.2
63,908 + CSW01_14315 0.77 -0.0
63,908 + CSW01_14315 0.77 +0.5
63,916 - CSW01_14315 0.78 -1.3
63,916 - CSW01_14315 0.78 -0.7
64,052 + -0.3
64,052 + -0.1
64,069 + -2.3
64,109 + +0.6
64,117 - -0.2
64,133 - +0.1
64,135 + +0.7
64,161 + +2.3
64,161 + +0.6
64,161 + -0.3
64,166 + +0.5
64,174 - -0.2
64,177 - +1.6
64,204 + -0.6
64,204 + -0.7
64,204 + -1.5
64,211 - +0.5
64,212 - -3.1
64,212 - -0.5
64,212 - -0.1
64,228 + -0.3
64,228 + -2.1
64,236 - +0.3
64,472 - CSW01_14320 0.26 +0.4
64,473 - CSW01_14320 0.26 +0.5
64,519 + CSW01_14320 0.30 -0.8
64,554 + CSW01_14320 0.32 +0.9
64,564 - CSW01_14320 0.33 -1.2
64,576 + CSW01_14320 0.34 +0.9
64,588 - CSW01_14320 0.35 +0.0
64,682 + CSW01_14320 0.41 +0.3
64,682 + CSW01_14320 0.41 +0.1
64,690 - CSW01_14320 0.42 +0.0
64,690 - CSW01_14320 0.42 +0.3
64,699 - CSW01_14320 0.42 +0.2
64,715 + CSW01_14320 0.44 -1.8
64,715 + CSW01_14320 0.44 +0.1
64,715 + CSW01_14320 0.44 -0.4
64,715 + CSW01_14320 0.44 +0.8
64,717 + CSW01_14320 0.44 -0.0
64,723 - CSW01_14320 0.44 -0.4
64,723 - CSW01_14320 0.44 -3.0
64,723 - CSW01_14320 0.44 +0.9
64,723 - CSW01_14320 0.44 -1.7
64,774 - CSW01_14320 0.48 +0.1
64,898 + CSW01_14320 0.57 +0.7
64,906 + CSW01_14320 0.57 -0.6
64,937 - CSW01_14320 0.59 +0.9
64,939 - CSW01_14320 0.59 +0.6
64,977 - CSW01_14320 0.62 +3.8
65,050 - CSW01_14320 0.67 +0.9
65,058 + CSW01_14320 0.68 -1.7

Or see this region's nucleotide sequence