Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14205

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14195 and CSW01_14200 are separated by 0 nucleotidesCSW01_14200 and CSW01_14205 are separated by 120 nucleotidesCSW01_14205 and CSW01_14210 are separated by 97 nucleotides CSW01_14195: CSW01_14195 - IclR family transcriptional regulator, at 35,949 to 36,683 _14195 CSW01_14200: CSW01_14200 - arginase, at 36,684 to 37,526 _14200 CSW01_14205: CSW01_14205 - methyl-accepting chemotaxis protein, at 37,647 to 39,212 _14205 CSW01_14210: CSW01_14210 - hypothetical protein, at 39,310 to 39,870 _14210 Position (kb) 37 38 39 40Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 36.670 kb on - strandat 36.679 kb on + strandat 36.679 kb on + strandat 36.701 kb on + strandat 36.714 kb on + strandat 36.800 kb on + strand, within CSW01_14200at 36.961 kb on - strand, within CSW01_14200at 37.014 kb on + strand, within CSW01_14200at 37.057 kb on + strand, within CSW01_14200at 37.065 kb on - strand, within CSW01_14200at 37.065 kb on - strand, within CSW01_14200at 37.065 kb on - strand, within CSW01_14200at 37.099 kb on + strand, within CSW01_14200at 37.136 kb on + strand, within CSW01_14200at 37.159 kb on - strand, within CSW01_14200at 37.161 kb on + strand, within CSW01_14200at 37.161 kb on + strand, within CSW01_14200at 37.161 kb on + strand, within CSW01_14200at 37.164 kb on - strand, within CSW01_14200at 37.169 kb on - strand, within CSW01_14200at 37.172 kb on + strand, within CSW01_14200at 37.180 kb on + strand, within CSW01_14200at 37.180 kb on + strand, within CSW01_14200at 37.180 kb on + strand, within CSW01_14200at 37.181 kb on - strand, within CSW01_14200at 37.187 kb on - strand, within CSW01_14200at 37.188 kb on - strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.219 kb on + strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.227 kb on - strand, within CSW01_14200at 37.278 kb on + strand, within CSW01_14200at 37.314 kb on - strand, within CSW01_14200at 37.314 kb on - strand, within CSW01_14200at 37.356 kb on + strand, within CSW01_14200at 37.356 kb on - strand, within CSW01_14200at 37.364 kb on - strand, within CSW01_14200at 37.376 kb on + strand, within CSW01_14200at 37.381 kb on - strand, within CSW01_14200at 37.421 kb on - strand, within CSW01_14200at 37.461 kb on + strandat 37.474 kb on - strandat 37.516 kb on + strandat 37.524 kb on - strandat 37.579 kb on - strandat 37.581 kb on - strandat 37.588 kb on + strandat 37.589 kb on - strandat 37.677 kb on + strandat 37.690 kb on + strandat 37.700 kb on + strandat 37.700 kb on + strandat 37.700 kb on + strandat 37.703 kb on - strandat 37.708 kb on - strandat 37.734 kb on + strandat 37.805 kb on + strand, within CSW01_14205at 37.815 kb on + strand, within CSW01_14205at 37.821 kb on - strand, within CSW01_14205at 37.929 kb on + strand, within CSW01_14205at 37.994 kb on - strand, within CSW01_14205at 38.036 kb on + strand, within CSW01_14205at 38.248 kb on + strand, within CSW01_14205at 38.256 kb on - strand, within CSW01_14205at 38.261 kb on - strand, within CSW01_14205at 38.288 kb on - strand, within CSW01_14205at 38.291 kb on + strand, within CSW01_14205at 38.309 kb on - strand, within CSW01_14205at 38.469 kb on + strand, within CSW01_14205at 38.480 kb on + strand, within CSW01_14205at 38.480 kb on + strand, within CSW01_14205at 38.480 kb on + strand, within CSW01_14205at 38.488 kb on - strand, within CSW01_14205at 38.488 kb on - strand, within CSW01_14205at 38.488 kb on - strand, within CSW01_14205at 38.521 kb on + strand, within CSW01_14205at 38.597 kb on + strand, within CSW01_14205at 38.597 kb on + strand, within CSW01_14205at 38.682 kb on + strand, within CSW01_14205at 38.690 kb on - strand, within CSW01_14205at 38.797 kb on + strand, within CSW01_14205at 38.797 kb on + strand, within CSW01_14205at 38.797 kb on + strand, within CSW01_14205at 38.805 kb on - strand, within CSW01_14205at 38.860 kb on - strand, within CSW01_14205at 38.867 kb on + strand, within CSW01_14205at 38.867 kb on + strand, within CSW01_14205at 38.875 kb on - strand, within CSW01_14205at 38.875 kb on - strand, within CSW01_14205at 38.885 kb on + strand, within CSW01_14205at 38.887 kb on - strand, within CSW01_14205at 38.933 kb on - strand, within CSW01_14205at 39.110 kb on + strandat 39.110 kb on + strandat 39.147 kb on - strandat 39.152 kb on + strandat 39.152 kb on + strandat 39.158 kb on - strandat 39.160 kb on - strandat 39.160 kb on - strandat 39.167 kb on - strandat 39.194 kb on + strandat 39.202 kb on - strandat 39.218 kb on + strandat 39.246 kb on - strandat 39.307 kb on + strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.315 kb on - strandat 39.447 kb on + strand, within CSW01_14210at 39.467 kb on + strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.509 kb on - strand, within CSW01_14210at 39.512 kb on + strand, within CSW01_14210at 39.530 kb on - strand, within CSW01_14210at 39.539 kb on + strand, within CSW01_14210at 39.766 kb on + strand, within CSW01_14210at 39.827 kb on + strandat 39.905 kb on + strandat 39.970 kb on - strandat 39.974 kb on - strandat 39.996 kb on + strandat 40.003 kb on + strandat 40.003 kb on + strandat 40.004 kb on - strandat 40.004 kb on - strandat 40.008 kb on + strandat 40.008 kb on + strandat 40.011 kb on - strandat 40.011 kb on - strandat 40.198 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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36,670 - -0.9
36,679 + +0.1
36,679 + -2.3
36,701 + +0.9
36,714 + -0.6
36,800 + CSW01_14200 0.14 -1.3
36,961 - CSW01_14200 0.33 -2.6
37,014 + CSW01_14200 0.39 -0.3
37,057 + CSW01_14200 0.44 +0.7
37,065 - CSW01_14200 0.45 +0.3
37,065 - CSW01_14200 0.45 -1.3
37,065 - CSW01_14200 0.45 +0.6
37,099 + CSW01_14200 0.49 -1.1
37,136 + CSW01_14200 0.54 +0.4
37,159 - CSW01_14200 0.56 -0.3
37,161 + CSW01_14200 0.57 +0.1
37,161 + CSW01_14200 0.57 +0.0
37,161 + CSW01_14200 0.57 +0.2
37,164 - CSW01_14200 0.57 +0.7
37,169 - CSW01_14200 0.58 -0.6
37,172 + CSW01_14200 0.58 +0.7
37,180 + CSW01_14200 0.59 -0.5
37,180 + CSW01_14200 0.59 -1.1
37,180 + CSW01_14200 0.59 +0.3
37,181 - CSW01_14200 0.59 +0.1
37,187 - CSW01_14200 0.60 +0.0
37,188 - CSW01_14200 0.60 -0.0
37,219 + CSW01_14200 0.63 -0.5
37,219 + CSW01_14200 0.63 -0.1
37,219 + CSW01_14200 0.63 +0.5
37,219 + CSW01_14200 0.63 +1.3
37,219 + CSW01_14200 0.63 +0.7
37,219 + CSW01_14200 0.63 +0.7
37,219 + CSW01_14200 0.63 -0.0
37,219 + CSW01_14200 0.63 -0.3
37,219 + CSW01_14200 0.63 -0.3
37,227 - CSW01_14200 0.64 +2.8
37,227 - CSW01_14200 0.64 -0.1
37,227 - CSW01_14200 0.64 +0.5
37,227 - CSW01_14200 0.64 +2.2
37,227 - CSW01_14200 0.64 -0.6
37,227 - CSW01_14200 0.64 -0.2
37,227 - CSW01_14200 0.64 +1.1
37,227 - CSW01_14200 0.64 -0.1
37,227 - CSW01_14200 0.64 -1.1
37,227 - CSW01_14200 0.64 +2.4
37,227 - CSW01_14200 0.64 +0.1
37,227 - CSW01_14200 0.64 +0.2
37,227 - CSW01_14200 0.64 +0.1
37,278 + CSW01_14200 0.70 +0.1
37,314 - CSW01_14200 0.75 -0.3
37,314 - CSW01_14200 0.75 +0.2
37,356 + CSW01_14200 0.80 -1.7
37,356 - CSW01_14200 0.80 +1.8
37,364 - CSW01_14200 0.81 +0.8
37,376 + CSW01_14200 0.82 -0.1
37,381 - CSW01_14200 0.83 +0.9
37,421 - CSW01_14200 0.87 +2.0
37,461 + -1.9
37,474 - -1.5
37,516 + -1.7
37,524 - -0.4
37,579 - -0.8
37,581 - -2.5
37,588 + +1.2
37,589 - +0.9
37,677 + -0.6
37,690 + +0.8
37,700 + +0.3
37,700 + -0.3
37,700 + -1.5
37,703 - +0.7
37,708 - +1.3
37,734 + -1.1
37,805 + CSW01_14205 0.10 +0.5
37,815 + CSW01_14205 0.11 -1.2
37,821 - CSW01_14205 0.11 -0.2
37,929 + CSW01_14205 0.18 -0.0
37,994 - CSW01_14205 0.22 +0.3
38,036 + CSW01_14205 0.25 -0.2
38,248 + CSW01_14205 0.38 +0.7
38,256 - CSW01_14205 0.39 -1.0
38,261 - CSW01_14205 0.39 +0.1
38,288 - CSW01_14205 0.41 -1.5
38,291 + CSW01_14205 0.41 -0.6
38,309 - CSW01_14205 0.42 -2.0
38,469 + CSW01_14205 0.52 -0.2
38,480 + CSW01_14205 0.53 +0.6
38,480 + CSW01_14205 0.53 -0.7
38,480 + CSW01_14205 0.53 -0.8
38,488 - CSW01_14205 0.54 -0.3
38,488 - CSW01_14205 0.54 -1.0
38,488 - CSW01_14205 0.54 +0.3
38,521 + CSW01_14205 0.56 -0.4
38,597 + CSW01_14205 0.61 +1.4
38,597 + CSW01_14205 0.61 -1.6
38,682 + CSW01_14205 0.66 +0.3
38,690 - CSW01_14205 0.67 -3.9
38,797 + CSW01_14205 0.73 -0.7
38,797 + CSW01_14205 0.73 -0.3
38,797 + CSW01_14205 0.73 +2.5
38,805 - CSW01_14205 0.74 -1.1
38,860 - CSW01_14205 0.77 -0.1
38,867 + CSW01_14205 0.78 +0.2
38,867 + CSW01_14205 0.78 -1.4
38,875 - CSW01_14205 0.78 +0.8
38,875 - CSW01_14205 0.78 -1.3
38,885 + CSW01_14205 0.79 +1.0
38,887 - CSW01_14205 0.79 -0.4
38,933 - CSW01_14205 0.82 +0.1
39,110 + -1.3
39,110 + +0.2
39,147 - +0.2
39,152 + -0.2
39,152 + +0.6
39,158 - -2.7
39,160 - -0.8
39,160 - -1.0
39,167 - +1.8
39,194 + -0.7
39,202 - -0.8
39,218 + -0.6
39,246 - -0.5
39,307 + +1.0
39,315 - +1.6
39,315 - -0.3
39,315 - +0.4
39,315 - +0.2
39,315 - -0.3
39,447 + CSW01_14210 0.24 +0.1
39,467 + CSW01_14210 0.28 -1.5
39,509 - CSW01_14210 0.35 +1.2
39,509 - CSW01_14210 0.35 +0.5
39,509 - CSW01_14210 0.35 +0.1
39,509 - CSW01_14210 0.35 -1.2
39,509 - CSW01_14210 0.35 +2.1
39,512 + CSW01_14210 0.36 -1.4
39,530 - CSW01_14210 0.39 +0.8
39,539 + CSW01_14210 0.41 +0.6
39,766 + CSW01_14210 0.81 -0.8
39,827 + +0.5
39,905 + -1.9
39,970 - -0.3
39,974 - -0.5
39,996 + +0.1
40,003 + -0.6
40,003 + -0.8
40,004 - +0.2
40,004 - -0.7
40,008 + +0.6
40,008 + -0.4
40,011 - -0.6
40,011 - -0.2
40,198 + +0.4

Or see this region's nucleotide sequence