Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_12985 and CSW01_12990 are separated by 2 nucleotides CSW01_12990 and CSW01_12995 overlap by 51 nucleotides CSW01_12995 and CSW01_13000 are separated by 219 nucleotides CSW01_13000 and CSW01_13005 are separated by 135 nucleotides
CSW01_12985: CSW01_12985 - ElaA protein, at 2,779,148 to 2,779,597
_12985
CSW01_12990: CSW01_12990 - EamA family transporter, at 2,779,600 to 2,780,409
_12990
CSW01_12995: CSW01_12995 - lysine transporter LysM, at 2,780,359 to 2,780,931
_12995
CSW01_13000: CSW01_13000 - peptidylprolyl isomerase, at 2,781,151 to 2,781,771
_13000
CSW01_13005: CSW01_13005 - hypothetical protein, at 2,781,907 to 2,782,389
_13005
Position (kb)
2780
2781 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2779.362 kb on + strand, within CSW01_12985 at 2779.362 kb on + strand, within CSW01_12985 at 2779.368 kb on + strand, within CSW01_12985 at 2779.370 kb on - strand, within CSW01_12985 at 2779.370 kb on - strand, within CSW01_12985 at 2779.376 kb on - strand, within CSW01_12985 at 2779.399 kb on - strand, within CSW01_12985 at 2779.451 kb on - strand, within CSW01_12985 at 2779.531 kb on - strand, within CSW01_12985 at 2779.672 kb on + strand at 2779.738 kb on + strand, within CSW01_12990 at 2779.743 kb on + strand, within CSW01_12990 at 2779.743 kb on + strand, within CSW01_12990 at 2779.743 kb on + strand, within CSW01_12990 at 2779.743 kb on + strand, within CSW01_12990 at 2779.743 kb on + strand, within CSW01_12990 at 2779.743 kb on + strand, within CSW01_12990 at 2779.751 kb on - strand, within CSW01_12990 at 2779.751 kb on - strand, within CSW01_12990 at 2779.751 kb on - strand, within CSW01_12990 at 2779.751 kb on - strand, within CSW01_12990 at 2779.751 kb on - strand, within CSW01_12990 at 2779.774 kb on + strand, within CSW01_12990 at 2779.774 kb on + strand, within CSW01_12990 at 2779.804 kb on + strand, within CSW01_12990 at 2779.819 kb on + strand, within CSW01_12990 at 2779.827 kb on - strand, within CSW01_12990 at 2779.827 kb on - strand, within CSW01_12990 at 2779.827 kb on - strand, within CSW01_12990 at 2779.827 kb on - strand, within CSW01_12990 at 2779.870 kb on + strand, within CSW01_12990 at 2779.878 kb on - strand, within CSW01_12990 at 2779.878 kb on - strand, within CSW01_12990 at 2779.878 kb on - strand, within CSW01_12990 at 2779.878 kb on - strand, within CSW01_12990 at 2779.878 kb on - strand, within CSW01_12990 at 2779.893 kb on + strand, within CSW01_12990 at 2779.893 kb on + strand, within CSW01_12990 at 2779.893 kb on + strand, within CSW01_12990 at 2779.893 kb on + strand, within CSW01_12990 at 2779.893 kb on + strand, within CSW01_12990 at 2779.893 kb on + strand, within CSW01_12990 at 2779.893 kb on + strand, within CSW01_12990 at 2779.901 kb on - strand, within CSW01_12990 at 2779.901 kb on - strand, within CSW01_12990 at 2779.901 kb on - strand, within CSW01_12990 at 2779.901 kb on - strand, within CSW01_12990 at 2779.923 kb on - strand, within CSW01_12990 at 2779.968 kb on - strand, within CSW01_12990 at 2780.091 kb on + strand, within CSW01_12990 at 2780.091 kb on + strand, within CSW01_12990 at 2780.096 kb on + strand, within CSW01_12990 at 2780.099 kb on - strand, within CSW01_12990 at 2780.101 kb on - strand, within CSW01_12990 at 2780.103 kb on + strand, within CSW01_12990 at 2780.105 kb on - strand, within CSW01_12990 at 2780.163 kb on - strand, within CSW01_12990 at 2780.196 kb on - strand, within CSW01_12990 at 2780.200 kb on + strand, within CSW01_12990 at 2780.331 kb on - strand at 2780.331 kb on - strand at 2780.333 kb on + strand at 2780.341 kb on - strand at 2780.519 kb on + strand, within CSW01_12995 at 2780.519 kb on + strand, within CSW01_12995 at 2780.521 kb on - strand, within CSW01_12995 at 2780.527 kb on - strand, within CSW01_12995 at 2780.527 kb on - strand, within CSW01_12995 at 2780.543 kb on + strand, within CSW01_12995 at 2780.661 kb on + strand, within CSW01_12995 at 2780.683 kb on - strand, within CSW01_12995 at 2780.690 kb on - strand, within CSW01_12995 at 2780.749 kb on - strand, within CSW01_12995 at 2780.776 kb on - strand, within CSW01_12995 at 2780.786 kb on - strand, within CSW01_12995 at 2780.877 kb on - strand at 2780.971 kb on + strand at 2780.971 kb on + strand at 2780.978 kb on + strand at 2780.978 kb on + strand at 2780.978 kb on + strand at 2780.986 kb on - strand at 2780.986 kb on - strand at 2781.110 kb on + strand at 2781.244 kb on + strand, within CSW01_13000 at 2781.252 kb on - strand, within CSW01_13000 at 2781.252 kb on - strand, within CSW01_13000 at 2781.436 kb on + strand, within CSW01_13000 at 2781.444 kb on - strand, within CSW01_13000 at 2781.465 kb on - strand, within CSW01_13000 at 2781.507 kb on + strand, within CSW01_13000 at 2781.556 kb on + strand, within CSW01_13000 at 2781.556 kb on + strand, within CSW01_13000 at 2781.564 kb on - strand, within CSW01_13000 at 2781.623 kb on + strand, within CSW01_13000 at 2781.624 kb on + strand, within CSW01_13000 at 2781.624 kb on + strand, within CSW01_13000 at 2781.632 kb on - strand, within CSW01_13000 at 2781.676 kb on + strand, within CSW01_13000 at 2781.683 kb on + strand, within CSW01_13000 at 2781.683 kb on + strand, within CSW01_13000 at 2781.691 kb on - strand, within CSW01_13000 at 2781.756 kb on + strand at 2781.862 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B remove 2,779,362 + CSW01_12985 0.48 -0.4 2,779,362 + CSW01_12985 0.48 +2.0 2,779,368 + CSW01_12985 0.49 -0.3 2,779,370 - CSW01_12985 0.49 -0.2 2,779,370 - CSW01_12985 0.49 -0.6 2,779,376 - CSW01_12985 0.51 -0.1 2,779,399 - CSW01_12985 0.56 +0.4 2,779,451 - CSW01_12985 0.67 +0.1 2,779,531 - CSW01_12985 0.85 +0.2 2,779,672 + -0.7 2,779,738 + CSW01_12990 0.17 -0.3 2,779,743 + CSW01_12990 0.18 -1.4 2,779,743 + CSW01_12990 0.18 +0.0 2,779,743 + CSW01_12990 0.18 -2.8 2,779,743 + CSW01_12990 0.18 -0.1 2,779,743 + CSW01_12990 0.18 +1.3 2,779,743 + CSW01_12990 0.18 -1.0 2,779,751 - CSW01_12990 0.19 -0.0 2,779,751 - CSW01_12990 0.19 -0.6 2,779,751 - CSW01_12990 0.19 -0.4 2,779,751 - CSW01_12990 0.19 -0.3 2,779,751 - CSW01_12990 0.19 -1.0 2,779,774 + CSW01_12990 0.21 +0.1 2,779,774 + CSW01_12990 0.21 -0.2 2,779,804 + CSW01_12990 0.25 -1.2 2,779,819 + CSW01_12990 0.27 -0.2 2,779,827 - CSW01_12990 0.28 -0.0 2,779,827 - CSW01_12990 0.28 -1.6 2,779,827 - CSW01_12990 0.28 +0.7 2,779,827 - CSW01_12990 0.28 +0.4 2,779,870 + CSW01_12990 0.33 +1.4 2,779,878 - CSW01_12990 0.34 -0.1 2,779,878 - CSW01_12990 0.34 -0.1 2,779,878 - CSW01_12990 0.34 -0.8 2,779,878 - CSW01_12990 0.34 -0.7 2,779,878 - CSW01_12990 0.34 -0.0 2,779,893 + CSW01_12990 0.36 -0.1 2,779,893 + CSW01_12990 0.36 +0.1 2,779,893 + CSW01_12990 0.36 -1.5 2,779,893 + CSW01_12990 0.36 -0.7 2,779,893 + CSW01_12990 0.36 +0.2 2,779,893 + CSW01_12990 0.36 +0.0 2,779,893 + CSW01_12990 0.36 -0.1 2,779,901 - CSW01_12990 0.37 +1.3 2,779,901 - CSW01_12990 0.37 +0.4 2,779,901 - CSW01_12990 0.37 +0.0 2,779,901 - CSW01_12990 0.37 -0.4 2,779,923 - CSW01_12990 0.40 -0.2 2,779,968 - CSW01_12990 0.45 +1.3 2,780,091 + CSW01_12990 0.61 -0.2 2,780,091 + CSW01_12990 0.61 -2.4 2,780,096 + CSW01_12990 0.61 -0.4 2,780,099 - CSW01_12990 0.62 -0.3 2,780,101 - CSW01_12990 0.62 +1.8 2,780,103 + CSW01_12990 0.62 -0.2 2,780,105 - CSW01_12990 0.62 +1.3 2,780,163 - CSW01_12990 0.70 -0.4 2,780,196 - CSW01_12990 0.74 -0.2 2,780,200 + CSW01_12990 0.74 +0.5 2,780,331 - +0.3 2,780,331 - -0.0 2,780,333 + -0.4 2,780,341 - -0.0 2,780,519 + CSW01_12995 0.28 -0.4 2,780,519 + CSW01_12995 0.28 +0.6 2,780,521 - CSW01_12995 0.28 -0.7 2,780,527 - CSW01_12995 0.29 -0.3 2,780,527 - CSW01_12995 0.29 -0.8 2,780,543 + CSW01_12995 0.32 -0.3 2,780,661 + CSW01_12995 0.53 -1.3 2,780,683 - CSW01_12995 0.57 +0.1 2,780,690 - CSW01_12995 0.58 -0.9 2,780,749 - CSW01_12995 0.68 -0.1 2,780,776 - CSW01_12995 0.73 -0.8 2,780,786 - CSW01_12995 0.75 +0.5 2,780,877 - -0.1 2,780,971 + -0.0 2,780,971 + -0.4 2,780,978 + +0.0 2,780,978 + +0.0 2,780,978 + -0.5 2,780,986 - +0.3 2,780,986 - -0.5 2,781,110 + +0.1 2,781,244 + CSW01_13000 0.15 +0.2 2,781,252 - CSW01_13000 0.16 -0.7 2,781,252 - CSW01_13000 0.16 -0.0 2,781,436 + CSW01_13000 0.46 +0.6 2,781,444 - CSW01_13000 0.47 +0.7 2,781,465 - CSW01_13000 0.51 -0.2 2,781,507 + CSW01_13000 0.57 +0.4 2,781,556 + CSW01_13000 0.65 +0.7 2,781,556 + CSW01_13000 0.65 +0.4 2,781,564 - CSW01_13000 0.67 -0.8 2,781,623 + CSW01_13000 0.76 -2.4 2,781,624 + CSW01_13000 0.76 +0.4 2,781,624 + CSW01_13000 0.76 -0.2 2,781,632 - CSW01_13000 0.77 -0.6 2,781,676 + CSW01_13000 0.85 +0.2 2,781,683 + CSW01_13000 0.86 -1.2 2,781,683 + CSW01_13000 0.86 -0.6 2,781,691 - CSW01_13000 0.87 +0.1 2,781,756 + -0.5 2,781,862 - -0.4
Or see this region's nucleotide sequence