Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12995

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_12985 and CSW01_12990 are separated by 2 nucleotidesCSW01_12990 and CSW01_12995 overlap by 51 nucleotidesCSW01_12995 and CSW01_13000 are separated by 219 nucleotidesCSW01_13000 and CSW01_13005 are separated by 135 nucleotides CSW01_12985: CSW01_12985 - ElaA protein, at 2,779,148 to 2,779,597 _12985 CSW01_12990: CSW01_12990 - EamA family transporter, at 2,779,600 to 2,780,409 _12990 CSW01_12995: CSW01_12995 - lysine transporter LysM, at 2,780,359 to 2,780,931 _12995 CSW01_13000: CSW01_13000 - peptidylprolyl isomerase, at 2,781,151 to 2,781,771 _13000 CSW01_13005: CSW01_13005 - hypothetical protein, at 2,781,907 to 2,782,389 _13005 Position (kb) 2780 2781Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2779.362 kb on + strand, within CSW01_12985at 2779.362 kb on + strand, within CSW01_12985at 2779.368 kb on + strand, within CSW01_12985at 2779.370 kb on - strand, within CSW01_12985at 2779.370 kb on - strand, within CSW01_12985at 2779.376 kb on - strand, within CSW01_12985at 2779.399 kb on - strand, within CSW01_12985at 2779.451 kb on - strand, within CSW01_12985at 2779.531 kb on - strand, within CSW01_12985at 2779.672 kb on + strandat 2779.738 kb on + strand, within CSW01_12990at 2779.743 kb on + strand, within CSW01_12990at 2779.743 kb on + strand, within CSW01_12990at 2779.743 kb on + strand, within CSW01_12990at 2779.743 kb on + strand, within CSW01_12990at 2779.743 kb on + strand, within CSW01_12990at 2779.743 kb on + strand, within CSW01_12990at 2779.751 kb on - strand, within CSW01_12990at 2779.751 kb on - strand, within CSW01_12990at 2779.751 kb on - strand, within CSW01_12990at 2779.751 kb on - strand, within CSW01_12990at 2779.751 kb on - strand, within CSW01_12990at 2779.774 kb on + strand, within CSW01_12990at 2779.774 kb on + strand, within CSW01_12990at 2779.804 kb on + strand, within CSW01_12990at 2779.819 kb on + strand, within CSW01_12990at 2779.827 kb on - strand, within CSW01_12990at 2779.827 kb on - strand, within CSW01_12990at 2779.827 kb on - strand, within CSW01_12990at 2779.827 kb on - strand, within CSW01_12990at 2779.870 kb on + strand, within CSW01_12990at 2779.878 kb on - strand, within CSW01_12990at 2779.878 kb on - strand, within CSW01_12990at 2779.878 kb on - strand, within CSW01_12990at 2779.878 kb on - strand, within CSW01_12990at 2779.878 kb on - strand, within CSW01_12990at 2779.893 kb on + strand, within CSW01_12990at 2779.893 kb on + strand, within CSW01_12990at 2779.893 kb on + strand, within CSW01_12990at 2779.893 kb on + strand, within CSW01_12990at 2779.893 kb on + strand, within CSW01_12990at 2779.893 kb on + strand, within CSW01_12990at 2779.893 kb on + strand, within CSW01_12990at 2779.901 kb on - strand, within CSW01_12990at 2779.901 kb on - strand, within CSW01_12990at 2779.901 kb on - strand, within CSW01_12990at 2779.901 kb on - strand, within CSW01_12990at 2779.923 kb on - strand, within CSW01_12990at 2779.968 kb on - strand, within CSW01_12990at 2780.091 kb on + strand, within CSW01_12990at 2780.091 kb on + strand, within CSW01_12990at 2780.096 kb on + strand, within CSW01_12990at 2780.099 kb on - strand, within CSW01_12990at 2780.101 kb on - strand, within CSW01_12990at 2780.103 kb on + strand, within CSW01_12990at 2780.105 kb on - strand, within CSW01_12990at 2780.163 kb on - strand, within CSW01_12990at 2780.196 kb on - strand, within CSW01_12990at 2780.200 kb on + strand, within CSW01_12990at 2780.331 kb on - strandat 2780.331 kb on - strandat 2780.333 kb on + strandat 2780.341 kb on - strandat 2780.519 kb on + strand, within CSW01_12995at 2780.519 kb on + strand, within CSW01_12995at 2780.521 kb on - strand, within CSW01_12995at 2780.527 kb on - strand, within CSW01_12995at 2780.527 kb on - strand, within CSW01_12995at 2780.543 kb on + strand, within CSW01_12995at 2780.661 kb on + strand, within CSW01_12995at 2780.683 kb on - strand, within CSW01_12995at 2780.690 kb on - strand, within CSW01_12995at 2780.749 kb on - strand, within CSW01_12995at 2780.776 kb on - strand, within CSW01_12995at 2780.786 kb on - strand, within CSW01_12995at 2780.877 kb on - strandat 2780.971 kb on + strandat 2780.971 kb on + strandat 2780.978 kb on + strandat 2780.978 kb on + strandat 2780.978 kb on + strandat 2780.986 kb on - strandat 2780.986 kb on - strandat 2781.110 kb on + strandat 2781.244 kb on + strand, within CSW01_13000at 2781.252 kb on - strand, within CSW01_13000at 2781.252 kb on - strand, within CSW01_13000at 2781.436 kb on + strand, within CSW01_13000at 2781.444 kb on - strand, within CSW01_13000at 2781.465 kb on - strand, within CSW01_13000at 2781.507 kb on + strand, within CSW01_13000at 2781.556 kb on + strand, within CSW01_13000at 2781.556 kb on + strand, within CSW01_13000at 2781.564 kb on - strand, within CSW01_13000at 2781.623 kb on + strand, within CSW01_13000at 2781.624 kb on + strand, within CSW01_13000at 2781.624 kb on + strand, within CSW01_13000at 2781.632 kb on - strand, within CSW01_13000at 2781.676 kb on + strand, within CSW01_13000at 2781.683 kb on + strand, within CSW01_13000at 2781.683 kb on + strand, within CSW01_13000at 2781.691 kb on - strand, within CSW01_13000at 2781.756 kb on + strandat 2781.862 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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2,779,362 + CSW01_12985 0.48 -0.4
2,779,362 + CSW01_12985 0.48 +2.0
2,779,368 + CSW01_12985 0.49 -0.3
2,779,370 - CSW01_12985 0.49 -0.2
2,779,370 - CSW01_12985 0.49 -0.6
2,779,376 - CSW01_12985 0.51 -0.1
2,779,399 - CSW01_12985 0.56 +0.4
2,779,451 - CSW01_12985 0.67 +0.1
2,779,531 - CSW01_12985 0.85 +0.2
2,779,672 + -0.7
2,779,738 + CSW01_12990 0.17 -0.3
2,779,743 + CSW01_12990 0.18 -1.4
2,779,743 + CSW01_12990 0.18 +0.0
2,779,743 + CSW01_12990 0.18 -2.8
2,779,743 + CSW01_12990 0.18 -0.1
2,779,743 + CSW01_12990 0.18 +1.3
2,779,743 + CSW01_12990 0.18 -1.0
2,779,751 - CSW01_12990 0.19 -0.0
2,779,751 - CSW01_12990 0.19 -0.6
2,779,751 - CSW01_12990 0.19 -0.4
2,779,751 - CSW01_12990 0.19 -0.3
2,779,751 - CSW01_12990 0.19 -1.0
2,779,774 + CSW01_12990 0.21 +0.1
2,779,774 + CSW01_12990 0.21 -0.2
2,779,804 + CSW01_12990 0.25 -1.2
2,779,819 + CSW01_12990 0.27 -0.2
2,779,827 - CSW01_12990 0.28 -0.0
2,779,827 - CSW01_12990 0.28 -1.6
2,779,827 - CSW01_12990 0.28 +0.7
2,779,827 - CSW01_12990 0.28 +0.4
2,779,870 + CSW01_12990 0.33 +1.4
2,779,878 - CSW01_12990 0.34 -0.1
2,779,878 - CSW01_12990 0.34 -0.1
2,779,878 - CSW01_12990 0.34 -0.8
2,779,878 - CSW01_12990 0.34 -0.7
2,779,878 - CSW01_12990 0.34 -0.0
2,779,893 + CSW01_12990 0.36 -0.1
2,779,893 + CSW01_12990 0.36 +0.1
2,779,893 + CSW01_12990 0.36 -1.5
2,779,893 + CSW01_12990 0.36 -0.7
2,779,893 + CSW01_12990 0.36 +0.2
2,779,893 + CSW01_12990 0.36 +0.0
2,779,893 + CSW01_12990 0.36 -0.1
2,779,901 - CSW01_12990 0.37 +1.3
2,779,901 - CSW01_12990 0.37 +0.4
2,779,901 - CSW01_12990 0.37 +0.0
2,779,901 - CSW01_12990 0.37 -0.4
2,779,923 - CSW01_12990 0.40 -0.2
2,779,968 - CSW01_12990 0.45 +1.3
2,780,091 + CSW01_12990 0.61 -0.2
2,780,091 + CSW01_12990 0.61 -2.4
2,780,096 + CSW01_12990 0.61 -0.4
2,780,099 - CSW01_12990 0.62 -0.3
2,780,101 - CSW01_12990 0.62 +1.8
2,780,103 + CSW01_12990 0.62 -0.2
2,780,105 - CSW01_12990 0.62 +1.3
2,780,163 - CSW01_12990 0.70 -0.4
2,780,196 - CSW01_12990 0.74 -0.2
2,780,200 + CSW01_12990 0.74 +0.5
2,780,331 - +0.3
2,780,331 - -0.0
2,780,333 + -0.4
2,780,341 - -0.0
2,780,519 + CSW01_12995 0.28 -0.4
2,780,519 + CSW01_12995 0.28 +0.6
2,780,521 - CSW01_12995 0.28 -0.7
2,780,527 - CSW01_12995 0.29 -0.3
2,780,527 - CSW01_12995 0.29 -0.8
2,780,543 + CSW01_12995 0.32 -0.3
2,780,661 + CSW01_12995 0.53 -1.3
2,780,683 - CSW01_12995 0.57 +0.1
2,780,690 - CSW01_12995 0.58 -0.9
2,780,749 - CSW01_12995 0.68 -0.1
2,780,776 - CSW01_12995 0.73 -0.8
2,780,786 - CSW01_12995 0.75 +0.5
2,780,877 - -0.1
2,780,971 + -0.0
2,780,971 + -0.4
2,780,978 + +0.0
2,780,978 + +0.0
2,780,978 + -0.5
2,780,986 - +0.3
2,780,986 - -0.5
2,781,110 + +0.1
2,781,244 + CSW01_13000 0.15 +0.2
2,781,252 - CSW01_13000 0.16 -0.7
2,781,252 - CSW01_13000 0.16 -0.0
2,781,436 + CSW01_13000 0.46 +0.6
2,781,444 - CSW01_13000 0.47 +0.7
2,781,465 - CSW01_13000 0.51 -0.2
2,781,507 + CSW01_13000 0.57 +0.4
2,781,556 + CSW01_13000 0.65 +0.7
2,781,556 + CSW01_13000 0.65 +0.4
2,781,564 - CSW01_13000 0.67 -0.8
2,781,623 + CSW01_13000 0.76 -2.4
2,781,624 + CSW01_13000 0.76 +0.4
2,781,624 + CSW01_13000 0.76 -0.2
2,781,632 - CSW01_13000 0.77 -0.6
2,781,676 + CSW01_13000 0.85 +0.2
2,781,683 + CSW01_13000 0.86 -1.2
2,781,683 + CSW01_13000 0.86 -0.6
2,781,691 - CSW01_13000 0.87 +0.1
2,781,756 + -0.5
2,781,862 - -0.4

Or see this region's nucleotide sequence