Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12970

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
2,773,902	+		CSW01_12965	0.22	-0.0
2,773,920	-		CSW01_12965	0.24	+0.0
2,773,936	+		CSW01_12965	0.26	-2.8
2,773,956	-		CSW01_12965	0.28	-1.7
2,773,958	+		CSW01_12965	0.28	-0.2
2,773,958	+		CSW01_12965	0.28	-1.0
2,773,958	+		CSW01_12965	0.28	+0.1
2,773,958	+		CSW01_12965	0.28	+1.1
2,773,958	+		CSW01_12965	0.28	+0.8
2,773,958	+		CSW01_12965	0.28	-2.1
2,773,958	+		CSW01_12965	0.28	-1.5
2,773,961	-		CSW01_12965	0.29	-2.4
2,773,966	-		CSW01_12965	0.29	+0.4
2,773,966	-		CSW01_12965	0.29	-0.6
2,773,966	-		CSW01_12965	0.29	+0.5
2,773,966	-		CSW01_12965	0.29	-0.9
2,773,966	-		CSW01_12965	0.29	-1.1
2,773,966	-		CSW01_12965	0.29	+0.6
2,774,002	+		CSW01_12965	0.33	-0.1
2,774,010	-		CSW01_12965	0.34	-0.8
2,774,010	-		CSW01_12965	0.34	-0.9
2,774,020	-		CSW01_12965	0.35	+0.4
2,774,020	-		CSW01_12965	0.35	-0.1
2,774,054	-		CSW01_12965	0.39	+0.4
2,774,054	-		CSW01_12965	0.39	-0.6
2,774,104	+		CSW01_12965	0.45	-0.1
2,774,157	+		CSW01_12965	0.50	+0.4
2,774,214	+		CSW01_12965	0.57	-0.5
2,774,256	+		CSW01_12965	0.61	+0.7
2,774,291	+		CSW01_12965	0.65	+0.1
2,774,291	+		CSW01_12965	0.65	+1.4
2,774,291	+		CSW01_12965	0.65	+1.2
2,774,291	+		CSW01_12965	0.65	-1.3
2,774,299	-		CSW01_12965	0.66	-1.4
2,774,299	-		CSW01_12965	0.66	+1.0
2,774,299	-		CSW01_12965	0.66	-0.7
2,774,299	-		CSW01_12965	0.66	-0.2
2,774,299	-		CSW01_12965	0.66	+0.8
2,774,326	-		CSW01_12965	0.69	-0.2
2,774,326	-		CSW01_12965	0.69	-0.8
2,774,326	-		CSW01_12965	0.69	-0.8
2,774,362	+		CSW01_12965	0.73	+0.1
2,774,423	+		CSW01_12965	0.80	-3.1
2,774,431	-		CSW01_12965	0.81	-0.3
2,774,436	-		CSW01_12965	0.81	-0.3
2,774,443	+		CSW01_12965	0.82	+1.1
2,774,498	+		CSW01_12965	0.88	+0.4
2,774,498	+		CSW01_12965	0.88	+0.0
2,774,498	+		CSW01_12965	0.88	-0.5
2,774,506	-		CSW01_12965	0.89	-0.2
2,774,506	-		CSW01_12965	0.89	-0.4
2,774,587	+				-0.6
2,774,592	+				-0.7
2,774,690	+				+0.7
2,774,697	+				+0.2
2,774,698	-				-0.3
2,774,718	+				-0.2
2,774,719	+				+0.4
2,774,750	-				-0.1
2,774,871	+				-0.5
2,774,880	-				-0.7
2,774,892	-				+0.4
2,775,016	+				-0.4
2,775,076	-				-0.8
2,775,100	+		CSW01_12970	0.11	-0.0
2,775,100	+		CSW01_12970	0.11	+0.5
2,775,100	+		CSW01_12970	0.11	+1.1
2,775,100	+		CSW01_12970	0.11	+0.1
2,775,108	-		CSW01_12970	0.11	-0.8
2,775,136	+		CSW01_12970	0.13	-1.5
2,775,144	-		CSW01_12970	0.13	+0.7
2,775,167	-		CSW01_12970	0.14	+0.7
2,775,187	+		CSW01_12970	0.15	+0.2
2,775,227	+		CSW01_12970	0.17	+0.3
2,775,227	+		CSW01_12970	0.17	-1.6
2,775,227	+		CSW01_12970	0.17	+1.9
2,775,227	+		CSW01_12970	0.17	-0.6
2,775,227	+		CSW01_12970	0.17	+0.1
2,775,235	-		CSW01_12970	0.18	+0.6
2,775,235	-		CSW01_12970	0.18	+1.1
2,775,235	-		CSW01_12970	0.18	+0.4
2,775,235	-		CSW01_12970	0.18	-0.6
2,775,235	-		CSW01_12970	0.18	+0.1
2,775,235	-		CSW01_12970	0.18	-1.0
2,775,235	-		CSW01_12970	0.18	+0.4
2,775,277	-		CSW01_12970	0.20	-0.0
2,775,310	+		CSW01_12970	0.22	-0.8
2,775,323	-		CSW01_12970	0.22	-1.3
2,775,354	-		CSW01_12970	0.24	-2.9
2,775,354	-		CSW01_12970	0.24	+1.6
2,775,364	+		CSW01_12970	0.24	+0.6
2,775,370	-		CSW01_12970	0.25	-1.6
2,775,386	+		CSW01_12970	0.25	-0.2
2,775,386	+		CSW01_12970	0.25	+0.2
2,775,386	+		CSW01_12970	0.25	-0.2
2,775,386	+		CSW01_12970	0.25	-0.4
2,775,386	+		CSW01_12970	0.25	+0.1
2,775,394	-		CSW01_12970	0.26	-0.2
2,775,394	-		CSW01_12970	0.26	+1.4
2,775,394	-		CSW01_12970	0.26	-0.6
2,775,394	-		CSW01_12970	0.26	+0.3
2,775,394	-		CSW01_12970	0.26	-0.9
2,775,394	-		CSW01_12970	0.26	+0.9
2,775,437	+		CSW01_12970	0.28	+0.7
2,775,437	+		CSW01_12970	0.28	+0.2
2,775,484	+		CSW01_12970	0.30	+0.2
2,775,583	+		CSW01_12970	0.35	-0.3
2,775,585	+		CSW01_12970	0.36	-0.7
2,775,642	+		CSW01_12970	0.38	+0.2
2,775,650	-		CSW01_12970	0.39	-0.3
2,775,675	+		CSW01_12970	0.40	-0.4
2,775,683	-		CSW01_12970	0.41	+1.0
2,775,683	-		CSW01_12970	0.41	-0.3
2,775,738	-		CSW01_12970	0.43	-1.6
2,775,771	+		CSW01_12970	0.45	-0.1
2,775,785	+		CSW01_12970	0.46	-0.0
2,775,793	-		CSW01_12970	0.46	-0.6
2,775,807	-		CSW01_12970	0.47	+0.2
2,775,807	-		CSW01_12970	0.47	-0.2
2,775,839	+		CSW01_12970	0.49	-0.4
2,775,857	-		CSW01_12970	0.49	+0.6
2,775,895	+		CSW01_12970	0.51	-0.2
2,775,895	+		CSW01_12970	0.51	+0.3
2,775,991	+		CSW01_12970	0.56	-0.3
2,776,038	+		CSW01_12970	0.59	+0.1
2,776,083	-		CSW01_12970	0.61	+0.6
2,776,083	-		CSW01_12970	0.61	-0.6
2,776,093	-		CSW01_12970	0.61	+0.4
2,776,212	+		CSW01_12970	0.68	+1.5
2,776,212	+		CSW01_12970	0.68	+1.3
2,776,219	-		CSW01_12970	0.68	-0.1
2,776,219	-		CSW01_12970	0.68	+0.0
2,776,220	-		CSW01_12970	0.68	+0.2
2,776,231	+		CSW01_12970	0.69	+1.0
2,776,239	-		CSW01_12970	0.69	-0.2
2,776,241	+		CSW01_12970	0.69	-0.4
2,776,249	-		CSW01_12970	0.69	-0.1
2,776,281	+		CSW01_12970	0.71	+0.4
2,776,286	+		CSW01_12970	0.71	+0.2
2,776,294	-		CSW01_12970	0.72	+0.3
2,776,317	+		CSW01_12970	0.73	-0.5
2,776,368	+		CSW01_12970	0.75	-1.0
2,776,424	+		CSW01_12970	0.78	+0.6
2,776,434	+		CSW01_12970	0.79	-0.1
2,776,434	+		CSW01_12970	0.79	+1.1
2,776,434	+		CSW01_12970	0.79	-0.3
2,776,434	-		CSW01_12970	0.79	-1.6
2,776,451	+		CSW01_12970	0.80	+1.2
2,776,647	-		CSW01_12970	0.90	+0.7
2,776,667	-				+0.1
2,776,677	+				+0.0
2,776,774	+				+0.1
2,776,817	+				+1.1
2,776,979	+				-0.5
2,776,979	+				+0.7
2,776,987	-				-0.4
2,776,987	-				+0.4
2,776,987	-				-0.2
2,777,038	+		CSW01_12975	0.12	+0.1
2,777,046	-		CSW01_12975	0.14	+1.0
2,777,046	-		CSW01_12975	0.14	+0.5
2,777,087	+		CSW01_12975	0.21	+0.8
2,777,093	+		CSW01_12975	0.22	-0.5
2,777,124	+		CSW01_12975	0.27	+1.2
2,777,124	+		CSW01_12975	0.27	-0.1
2,777,126	+		CSW01_12975	0.28	+0.6
2,777,145	-		CSW01_12975	0.31	+0.6
2,777,185	-		CSW01_12975	0.38	+0.2
2,777,187	+		CSW01_12975	0.38	+0.7
2,777,195	-		CSW01_12975	0.40	-0.1
2,777,240	-		CSW01_12975	0.48	-0.3
2,777,254	+		CSW01_12975	0.50	-1.0
2,777,254	+		CSW01_12975	0.50	+0.3
2,777,262	-		CSW01_12975	0.52	+0.4
2,777,395	+		CSW01_12975	0.75	-0.9
2,777,450	+		CSW01_12975	0.85	-0.0
2,777,610	-				+0.0
2,777,629	+				-0.2
2,777,656	+				-1.0
2,777,656	+				+1.2
2,777,656	+				+1.1
2,777,692	-		CSW01_12980	0.11	+0.6
2,777,694	+		CSW01_12980	0.11	-0.8
2,777,756	-		CSW01_12980	0.16	+1.5
2,777,814	+		CSW01_12980	0.20	-2.0
2,777,821	-		CSW01_12980	0.20	+2.1