Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12405

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
2,661,440	+		CSW01_12400	0.14	+1.2
2,661,448	-		CSW01_12400	0.15	-0.2
2,661,478	+		CSW01_12400	0.19	+0.6
2,661,478	+		CSW01_12400	0.19	-1.2
2,661,486	-		CSW01_12400	0.19	-1.5
2,661,584	-		CSW01_12400	0.31	-0.2
2,661,644	+		CSW01_12400	0.39	+0.6
2,661,644	+		CSW01_12400	0.39	-0.3
2,661,644	+		CSW01_12400	0.39	+1.0
2,661,644	+		CSW01_12400	0.39	+0.5
2,661,644	+		CSW01_12400	0.39	+0.3
2,661,644	+		CSW01_12400	0.39	-0.6
2,661,652	-		CSW01_12400	0.40	+0.9
2,661,652	-		CSW01_12400	0.40	-0.9
2,661,669	+		CSW01_12400	0.42	-0.6
2,661,677	-		CSW01_12400	0.43	+0.1
2,661,725	+		CSW01_12400	0.49	+0.0
2,661,735	+		CSW01_12400	0.50	-0.7
2,661,735	+		CSW01_12400	0.50	+0.8
2,661,743	-		CSW01_12400	0.51	-0.1
2,661,836	-		CSW01_12400	0.62	-0.5
2,661,843	+		CSW01_12400	0.63	-0.5
2,661,850	+		CSW01_12400	0.64	+0.1
2,661,917	-		CSW01_12400	0.72	+0.3
2,661,958	+		CSW01_12400	0.77	-0.2
2,661,977	+		CSW01_12400	0.80	-0.9
2,661,977	+		CSW01_12400	0.80	-0.4
2,661,977	+		CSW01_12400	0.80	+0.3
2,661,977	+		CSW01_12400	0.80	+0.5
2,661,977	+		CSW01_12400	0.80	-0.7
2,661,977	+		CSW01_12400	0.80	+0.9
2,661,977	+		CSW01_12400	0.80	-0.4
2,661,985	-		CSW01_12400	0.81	-0.2
2,661,985	-		CSW01_12400	0.81	+0.6
2,661,985	-		CSW01_12400	0.81	+0.1
2,661,985	-		CSW01_12400	0.81	+0.5
2,661,985	-		CSW01_12400	0.81	+0.2
2,661,995	+		CSW01_12400	0.82	-1.9
2,662,003	-		CSW01_12400	0.83	-0.4
2,662,003	-		CSW01_12400	0.83	+2.3
2,662,003	-		CSW01_12400	0.83	+1.7
2,662,011	-		CSW01_12400	0.84	+1.0
2,662,013	+		CSW01_12400	0.84	-0.6
2,662,021	-		CSW01_12400	0.85	+0.4
2,662,021	-		CSW01_12400	0.85	+1.0
2,662,032	+		CSW01_12400	0.86	-0.3
2,662,033	-		CSW01_12400	0.87	-0.5
2,662,040	+		CSW01_12400	0.87	-0.5
2,662,040	+		CSW01_12400	0.87	+0.2
2,662,040	-		CSW01_12400	0.87	+0.7
2,662,040	-		CSW01_12400	0.87	+0.7
2,662,048	-		CSW01_12400	0.88	-0.3
2,662,048	-		CSW01_12400	0.88	-0.3
2,662,080	+				+0.8
2,662,080	+				+0.7
2,662,085	+				-0.1
2,662,088	-				-0.9
2,662,167	-				-1.2
2,662,169	+				+0.7
2,662,215	+				-0.5
2,662,238	+				+0.6
2,662,239	+				+0.0
2,662,247	-				+0.3
2,662,270	+				-0.3
2,662,278	-				-0.2
2,662,278	-				+0.9
2,662,302	+				+0.3
2,662,317	-				+0.8
2,662,323	-				+0.9
2,662,325	+				+0.0
2,662,383	+				-0.1
2,662,480	-		CSW01_12405	0.11	-0.2
2,662,480	-		CSW01_12405	0.11	+0.6
2,662,480	-		CSW01_12405	0.11	+0.2
2,662,492	+		CSW01_12405	0.11	+0.7
2,662,499	+		CSW01_12405	0.12	-0.2
2,662,505	-		CSW01_12405	0.12	-1.2
2,662,542	-		CSW01_12405	0.14	+0.4
2,662,581	+		CSW01_12405	0.15	+1.1
2,662,587	+		CSW01_12405	0.16	+0.4
2,662,587	+		CSW01_12405	0.16	+0.0
2,662,595	-		CSW01_12405	0.16	-0.2
2,662,600	-		CSW01_12405	0.16	-1.2
2,662,628	+		CSW01_12405	0.17	-0.1
2,662,636	-		CSW01_12405	0.18	+0.1
2,662,651	+		CSW01_12405	0.18	-0.1
2,662,651	+		CSW01_12405	0.18	-2.2
2,662,659	-		CSW01_12405	0.19	+0.1
2,662,659	-		CSW01_12405	0.19	+1.0
2,662,695	-		CSW01_12405	0.20	-0.1
2,662,706	+		CSW01_12405	0.21	-0.6
2,662,714	-		CSW01_12405	0.21	-1.0
2,662,752	-		CSW01_12405	0.23	-0.4
2,662,863	-		CSW01_12405	0.28	-0.4
2,662,893	-		CSW01_12405	0.29	+0.4
2,662,988	+		CSW01_12405	0.34	-0.7
2,663,035	+		CSW01_12405	0.36	+0.6
2,663,044	-		CSW01_12405	0.36	-1.2
2,663,146	+		CSW01_12405	0.41	+0.2
2,663,172	-		CSW01_12405	0.42	-1.7
2,663,225	-		CSW01_12405	0.44	+1.3
2,663,237	+		CSW01_12405	0.45	+0.4
2,663,245	-		CSW01_12405	0.45	+0.1
2,663,307	+		CSW01_12405	0.48	-0.1
2,663,369	+		CSW01_12405	0.51	+2.4
2,663,369	+		CSW01_12405	0.51	-0.1
2,663,369	+		CSW01_12405	0.51	+0.8
2,663,418	-		CSW01_12405	0.53	+0.2
2,663,420	-		CSW01_12405	0.53	+0.4
2,663,524	-		CSW01_12405	0.58	-3.3
2,663,598	-		CSW01_12405	0.61	-1.2
2,663,689	+		CSW01_12405	0.65	-0.3
2,663,697	-		CSW01_12405	0.66	+1.0
2,663,757	-		CSW01_12405	0.68	+1.8
2,663,825	+		CSW01_12405	0.71	+0.6
2,663,825	+		CSW01_12405	0.71	-0.1
2,663,825	+		CSW01_12405	0.71	-0.5
2,663,825	+		CSW01_12405	0.71	+0.4
2,663,825	+		CSW01_12405	0.71	+0.9
2,663,825	+		CSW01_12405	0.71	+0.4
2,663,833	-		CSW01_12405	0.72	-0.4
2,663,833	-		CSW01_12405	0.72	+0.0
2,663,833	-		CSW01_12405	0.72	+0.3
2,663,833	-		CSW01_12405	0.72	-0.2
2,663,833	-		CSW01_12405	0.72	+0.4
2,663,833	-		CSW01_12405	0.72	+0.5
2,663,833	-		CSW01_12405	0.72	-1.9
2,663,833	-		CSW01_12405	0.72	-0.2
2,663,833	-		CSW01_12405	0.72	+0.5
2,663,833	-		CSW01_12405	0.72	-0.3
2,663,833	-		CSW01_12405	0.72	-0.8
2,663,862	+		CSW01_12405	0.73	-0.1
2,663,870	-		CSW01_12405	0.73	+0.4
2,663,883	-		CSW01_12405	0.74	+0.8
2,663,890	+		CSW01_12405	0.74	-0.5
2,663,893	-		CSW01_12405	0.74	+1.3
2,663,893	-		CSW01_12405	0.74	+1.2
2,663,907	-		CSW01_12405	0.75	+0.0
2,663,922	-		CSW01_12405	0.76	+0.4
2,663,922	-		CSW01_12405	0.76	+0.5
2,663,931	+		CSW01_12405	0.76	-1.2
2,663,931	+		CSW01_12405	0.76	+0.6
2,663,931	+		CSW01_12405	0.76	-0.3
2,663,939	-		CSW01_12405	0.77	+0.7
2,663,939	-		CSW01_12405	0.77	+0.4
2,663,941	-		CSW01_12405	0.77	+0.3
2,663,957	-		CSW01_12405	0.77	-0.4
2,663,962	-		CSW01_12405	0.78	+0.0
2,663,984	+		CSW01_12405	0.79	-0.0
2,663,994	-		CSW01_12405	0.79	+0.1
2,664,044	+		CSW01_12405	0.81	-0.6
2,664,087	+		CSW01_12405	0.83	+0.1
2,664,108	-		CSW01_12405	0.84	+1.1
2,664,128	+		CSW01_12405	0.85	+0.3
2,664,140	+		CSW01_12405	0.86	+0.1
2,664,153	-		CSW01_12405	0.86	-1.0
2,664,153	-		CSW01_12405	0.86	-0.2
2,664,153	-		CSW01_12405	0.86	+0.7
2,664,155	-		CSW01_12405	0.86	+1.5
2,664,179	-		CSW01_12405	0.87	-0.3
2,664,181	-		CSW01_12405	0.87	+0.2
2,664,187	+		CSW01_12405	0.88	+0.3
2,664,289	+				+0.2
2,664,289	+				+0.8
2,664,297	-				-0.0
2,664,297	-				+0.8
2,664,297	-				-0.4
2,664,297	-				+0.6
2,664,297	-				-0.3
2,664,299	+				+1.0
2,664,299	+				-0.8
2,664,299	+				+1.2
2,664,299	+				-1.1
2,664,299	+				+0.0
2,664,305	-				-0.3
2,664,307	-				-0.1
2,664,307	-				-0.5
2,664,307	-				-0.1
2,664,348	-				-1.1
2,664,425	-				-0.4
2,664,427	+				+1.3
2,664,435	-				-0.0
2,664,435	-				+0.4
2,664,435	-				+0.3
2,664,435	-				-0.4
2,664,503	+				+0.7
2,664,505	+				+0.8
2,664,511	-				+0.3
2,664,624	+				-0.3
2,664,632	-				-1.8
2,664,632	-				+1.0
2,664,633	+				-0.8
2,664,652	+				-2.6
2,664,652	+				+0.5
2,664,652	+				-1.0
2,664,652	+				+0.6
2,664,658	+		CSW01_12410	0.10	-0.6
2,664,660	-		CSW01_12410	0.10	+0.7
2,664,660	-		CSW01_12410	0.10	+0.1
2,664,660	-		CSW01_12410	0.10	-0.0
2,664,660	-		CSW01_12410	0.10	+0.5
2,664,660	-		CSW01_12410	0.10	-1.2
2,664,660	-		CSW01_12410	0.10	+0.7
2,664,660	-		CSW01_12410	0.10	+0.0
2,664,660	-		CSW01_12410	0.10	+0.4
2,664,703	+		CSW01_12410	0.14	+0.2
2,664,767	+		CSW01_12410	0.19	+0.3
2,664,767	+		CSW01_12410	0.19	-0.8
2,664,777	+		CSW01_12410	0.19	+0.1
2,664,788	-		CSW01_12410	0.20	+0.3
2,664,788	-		CSW01_12410	0.20	+1.5
2,664,831	+		CSW01_12410	0.23	+0.4
2,664,855	+		CSW01_12410	0.25	+0.6
2,664,863	-		CSW01_12410	0.26	-0.1
2,664,869	+		CSW01_12410	0.26	-0.5
2,664,869	+		CSW01_12410	0.26	+0.4
2,664,875	-		CSW01_12410	0.27	-1.0
2,664,885	-		CSW01_12410	0.27	+0.3
2,664,886	-		CSW01_12410	0.28	-0.2
2,664,893	-		CSW01_12410	0.28	-0.5
2,664,904	+		CSW01_12410	0.29	+0.6
2,664,910	+		CSW01_12410	0.29	-1.4
2,664,912	-		CSW01_12410	0.29	+0.0
2,664,945	-		CSW01_12410	0.32	-0.7
2,664,945	-		CSW01_12410	0.32	-0.1
2,664,947	+		CSW01_12410	0.32	-0.6
2,664,974	+		CSW01_12410	0.34	-0.2
2,664,974	+		CSW01_12410	0.34	+0.9
2,664,974	+		CSW01_12410	0.34	-1.4
2,664,982	-		CSW01_12410	0.35	-0.3
2,664,982	-		CSW01_12410	0.35	+0.9
2,664,993	+		CSW01_12410	0.36	+2.9
2,665,000	+		CSW01_12410	0.36	+0.9
2,665,013	-		CSW01_12410	0.37	+0.4
2,665,021	+		CSW01_12410	0.38	-0.2
2,665,080	+		CSW01_12410	0.42	+0.5
2,665,088	-		CSW01_12410	0.43	-0.5
2,665,130	+		CSW01_12410	0.46	+0.2
2,665,138	-		CSW01_12410	0.47	+0.1
2,665,165	+		CSW01_12410	0.49	+0.5
2,665,173	+		CSW01_12410	0.49	+2.6
2,665,181	-		CSW01_12410	0.50	+0.2
2,665,227	+		CSW01_12410	0.53	-1.6
2,665,275	-		CSW01_12410	0.57	+0.2
2,665,275	-		CSW01_12410	0.57	-0.0
2,665,416	+		CSW01_12410	0.68	+0.7
2,665,421	+		CSW01_12410	0.68	+0.4