Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_08235

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_08225 and CSW01_08230 are separated by 264 nucleotidesCSW01_08230 and CSW01_08235 are separated by 11 nucleotidesCSW01_08235 and CSW01_08240 overlap by 26 nucleotides CSW01_08225: CSW01_08225 - ATP-dependent helicase, at 1,760,569 to 1,762,353 _08225 CSW01_08230: CSW01_08230 - hypothetical protein, at 1,762,618 to 1,763,025 _08230 CSW01_08235: CSW01_08235 - DNA-binding response regulator, at 1,763,037 to 1,763,696 _08235 CSW01_08240: CSW01_08240 - ATP-binding protein, at 1,763,671 to 1,765,059 _08240 Position (kb) 1763 1764Strain fitness (log2 ratio) -2 -1 0 1 2at 1762.145 kb on + strand, within CSW01_08225at 1762.191 kb on + strandat 1762.260 kb on + strandat 1762.260 kb on + strandat 1762.268 kb on - strandat 1762.302 kb on - strandat 1762.304 kb on - strandat 1762.466 kb on - strandat 1762.513 kb on - strandat 1762.518 kb on - strandat 1762.696 kb on - strand, within CSW01_08230at 1762.696 kb on - strand, within CSW01_08230at 1762.696 kb on - strand, within CSW01_08230at 1762.696 kb on - strand, within CSW01_08230at 1762.720 kb on + strand, within CSW01_08230at 1762.785 kb on - strand, within CSW01_08230at 1762.818 kb on - strand, within CSW01_08230at 1762.978 kb on - strand, within CSW01_08230at 1763.106 kb on + strand, within CSW01_08235at 1763.142 kb on + strand, within CSW01_08235at 1763.150 kb on - strand, within CSW01_08235at 1763.150 kb on - strand, within CSW01_08235at 1763.174 kb on - strand, within CSW01_08235at 1763.305 kb on - strand, within CSW01_08235at 1763.379 kb on + strand, within CSW01_08235at 1763.387 kb on - strand, within CSW01_08235at 1763.387 kb on - strand, within CSW01_08235at 1763.387 kb on - strand, within CSW01_08235at 1763.434 kb on + strand, within CSW01_08235at 1763.437 kb on - strand, within CSW01_08235at 1763.476 kb on + strand, within CSW01_08235at 1763.484 kb on - strand, within CSW01_08235at 1763.484 kb on - strand, within CSW01_08235at 1763.528 kb on + strand, within CSW01_08235at 1763.602 kb on + strand, within CSW01_08235at 1763.610 kb on - strand, within CSW01_08235at 1763.610 kb on - strand, within CSW01_08235at 1763.659 kb on - strandat 1763.668 kb on + strandat 1763.854 kb on + strand, within CSW01_08240at 1763.894 kb on + strand, within CSW01_08240at 1763.901 kb on - strand, within CSW01_08240at 1763.935 kb on - strand, within CSW01_08240at 1763.937 kb on + strand, within CSW01_08240at 1763.937 kb on + strand, within CSW01_08240at 1763.937 kb on + strand, within CSW01_08240at 1763.945 kb on - strand, within CSW01_08240at 1763.945 kb on - strand, within CSW01_08240at 1763.945 kb on - strand, within CSW01_08240at 1763.945 kb on - strand, within CSW01_08240at 1764.041 kb on + strand, within CSW01_08240at 1764.076 kb on + strand, within CSW01_08240at 1764.393 kb on + strand, within CSW01_08240at 1764.645 kb on + strand, within CSW01_08240at 1764.645 kb on + strand, within CSW01_08240

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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1,762,145 + CSW01_08225 0.88 +0.4
1,762,191 + +0.8
1,762,260 + +0.4
1,762,260 + -0.6
1,762,268 - -0.1
1,762,302 - +0.1
1,762,304 - +2.5
1,762,466 - -1.6
1,762,513 - -0.6
1,762,518 - +0.2
1,762,696 - CSW01_08230 0.19 +0.1
1,762,696 - CSW01_08230 0.19 -2.4
1,762,696 - CSW01_08230 0.19 +2.7
1,762,696 - CSW01_08230 0.19 -0.4
1,762,720 + CSW01_08230 0.25 -1.2
1,762,785 - CSW01_08230 0.41 +0.2
1,762,818 - CSW01_08230 0.49 +0.9
1,762,978 - CSW01_08230 0.88 +1.0
1,763,106 + CSW01_08235 0.10 +1.1
1,763,142 + CSW01_08235 0.16 +0.1
1,763,150 - CSW01_08235 0.17 +1.4
1,763,150 - CSW01_08235 0.17 -1.1
1,763,174 - CSW01_08235 0.21 +1.0
1,763,305 - CSW01_08235 0.41 -1.4
1,763,379 + CSW01_08235 0.52 -0.3
1,763,387 - CSW01_08235 0.53 +1.2
1,763,387 - CSW01_08235 0.53 +0.9
1,763,387 - CSW01_08235 0.53 +0.9
1,763,434 + CSW01_08235 0.60 +0.3
1,763,437 - CSW01_08235 0.61 -0.2
1,763,476 + CSW01_08235 0.67 -0.1
1,763,484 - CSW01_08235 0.68 +0.3
1,763,484 - CSW01_08235 0.68 +0.1
1,763,528 + CSW01_08235 0.74 +0.0
1,763,602 + CSW01_08235 0.86 +0.3
1,763,610 - CSW01_08235 0.87 +0.3
1,763,610 - CSW01_08235 0.87 +0.6
1,763,659 - +0.6
1,763,668 + -0.8
1,763,854 + CSW01_08240 0.13 +2.7
1,763,894 + CSW01_08240 0.16 +1.4
1,763,901 - CSW01_08240 0.17 -0.6
1,763,935 - CSW01_08240 0.19 +0.4
1,763,937 + CSW01_08240 0.19 -0.2
1,763,937 + CSW01_08240 0.19 +1.4
1,763,937 + CSW01_08240 0.19 +0.4
1,763,945 - CSW01_08240 0.20 +0.4
1,763,945 - CSW01_08240 0.20 +1.9
1,763,945 - CSW01_08240 0.20 -1.2
1,763,945 - CSW01_08240 0.20 -2.0
1,764,041 + CSW01_08240 0.27 +1.4
1,764,076 + CSW01_08240 0.29 -1.2
1,764,393 + CSW01_08240 0.52 +1.4
1,764,645 + CSW01_08240 0.70 -1.6
1,764,645 + CSW01_08240 0.70 -1.6

Or see this region's nucleotide sequence