Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07555

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_07550 and CSW01_07555 are separated by 101 nucleotidesCSW01_07555 and CSW01_07560 overlap by 8 nucleotidesCSW01_07560 and CSW01_07565 are separated by 275 nucleotides CSW01_07550: CSW01_07550 - GntR family transcriptional regulator, at 1,616,026 to 1,616,859 _07550 CSW01_07555: CSW01_07555 - hypothetical protein, at 1,616,961 to 1,618,310 _07555 CSW01_07560: CSW01_07560 - DUF4442 domain-containing protein, at 1,618,303 to 1,618,779 _07560 CSW01_07565: CSW01_07565 - 3-deoxy-7-phosphoheptulonate synthase, at 1,619,055 to 1,620,116 _07565 Position (kb) 1616 1617 1618 1619Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1615.978 kb on - strandat 1616.031 kb on - strandat 1616.204 kb on + strand, within CSW01_07550at 1616.204 kb on + strand, within CSW01_07550at 1616.212 kb on - strand, within CSW01_07550at 1616.276 kb on + strand, within CSW01_07550at 1616.284 kb on - strand, within CSW01_07550at 1616.296 kb on - strand, within CSW01_07550at 1616.352 kb on - strand, within CSW01_07550at 1616.382 kb on + strand, within CSW01_07550at 1616.382 kb on + strand, within CSW01_07550at 1616.566 kb on + strand, within CSW01_07550at 1616.834 kb on - strandat 1616.857 kb on - strandat 1616.904 kb on + strandat 1616.914 kb on - strandat 1617.022 kb on + strandat 1617.022 kb on + strandat 1617.058 kb on - strandat 1617.112 kb on + strand, within CSW01_07555at 1617.220 kb on + strand, within CSW01_07555at 1617.265 kb on - strand, within CSW01_07555at 1617.297 kb on - strand, within CSW01_07555at 1617.304 kb on - strand, within CSW01_07555at 1617.327 kb on - strand, within CSW01_07555at 1617.432 kb on + strand, within CSW01_07555at 1617.440 kb on - strand, within CSW01_07555at 1617.440 kb on - strand, within CSW01_07555at 1617.512 kb on + strand, within CSW01_07555at 1617.520 kb on - strand, within CSW01_07555at 1617.520 kb on - strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.538 kb on + strand, within CSW01_07555at 1617.546 kb on - strand, within CSW01_07555at 1617.546 kb on - strand, within CSW01_07555at 1617.546 kb on - strand, within CSW01_07555at 1617.546 kb on - strand, within CSW01_07555at 1617.546 kb on - strand, within CSW01_07555at 1617.546 kb on - strand, within CSW01_07555at 1617.546 kb on - strand, within CSW01_07555at 1617.556 kb on - strand, within CSW01_07555at 1617.681 kb on + strand, within CSW01_07555at 1617.687 kb on + strand, within CSW01_07555at 1617.694 kb on - strand, within CSW01_07555at 1617.699 kb on + strand, within CSW01_07555at 1617.699 kb on + strand, within CSW01_07555at 1617.707 kb on - strand, within CSW01_07555at 1617.788 kb on - strand, within CSW01_07555at 1617.842 kb on - strand, within CSW01_07555at 1618.223 kb on + strandat 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.365 kb on + strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.373 kb on - strand, within CSW01_07560at 1618.383 kb on - strand, within CSW01_07560at 1618.392 kb on + strand, within CSW01_07560at 1618.392 kb on - strand, within CSW01_07560at 1618.424 kb on + strand, within CSW01_07560at 1618.548 kb on + strand, within CSW01_07560at 1618.558 kb on + strand, within CSW01_07560at 1618.660 kb on - strand, within CSW01_07560at 1618.670 kb on - strand, within CSW01_07560at 1618.719 kb on - strand, within CSW01_07560at 1618.740 kb on + strandat 1618.740 kb on + strandat 1618.745 kb on + strandat 1618.748 kb on - strandat 1618.748 kb on - strandat 1618.748 kb on - strandat 1618.768 kb on + strandat 1618.776 kb on - strandat 1619.020 kb on + strandat 1619.115 kb on + strandat 1619.138 kb on - strandat 1619.272 kb on - strand, within CSW01_07565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
remove
1,615,978 - +0.7
1,616,031 - -1.1
1,616,204 + CSW01_07550 0.21 +1.2
1,616,204 + CSW01_07550 0.21 -0.5
1,616,212 - CSW01_07550 0.22 -0.5
1,616,276 + CSW01_07550 0.30 +0.1
1,616,284 - CSW01_07550 0.31 -0.8
1,616,296 - CSW01_07550 0.32 +0.8
1,616,352 - CSW01_07550 0.39 -0.4
1,616,382 + CSW01_07550 0.43 -0.6
1,616,382 + CSW01_07550 0.43 +0.6
1,616,566 + CSW01_07550 0.65 -1.6
1,616,834 - -1.8
1,616,857 - -0.9
1,616,904 + +0.7
1,616,914 - +0.4
1,617,022 + -1.1
1,617,022 + +0.5
1,617,058 - +0.3
1,617,112 + CSW01_07555 0.11 +0.0
1,617,220 + CSW01_07555 0.19 -0.6
1,617,265 - CSW01_07555 0.23 -1.5
1,617,297 - CSW01_07555 0.25 -1.6
1,617,304 - CSW01_07555 0.25 -0.4
1,617,327 - CSW01_07555 0.27 +0.4
1,617,432 + CSW01_07555 0.35 -1.5
1,617,440 - CSW01_07555 0.35 -0.6
1,617,440 - CSW01_07555 0.35 -1.6
1,617,512 + CSW01_07555 0.41 -0.6
1,617,520 - CSW01_07555 0.41 -2.2
1,617,520 - CSW01_07555 0.41 -1.4
1,617,538 + CSW01_07555 0.43 +0.1
1,617,538 + CSW01_07555 0.43 +0.4
1,617,538 + CSW01_07555 0.43 -1.5
1,617,538 + CSW01_07555 0.43 -0.1
1,617,538 + CSW01_07555 0.43 +1.8
1,617,538 + CSW01_07555 0.43 -1.3
1,617,538 + CSW01_07555 0.43 -0.6
1,617,538 + CSW01_07555 0.43 +0.6
1,617,538 + CSW01_07555 0.43 +0.4
1,617,538 + CSW01_07555 0.43 +0.6
1,617,538 + CSW01_07555 0.43 -3.9
1,617,546 - CSW01_07555 0.43 -0.1
1,617,546 - CSW01_07555 0.43 -1.5
1,617,546 - CSW01_07555 0.43 -0.2
1,617,546 - CSW01_07555 0.43 -0.1
1,617,546 - CSW01_07555 0.43 -1.0
1,617,546 - CSW01_07555 0.43 +2.1
1,617,546 - CSW01_07555 0.43 -0.3
1,617,556 - CSW01_07555 0.44 +0.4
1,617,681 + CSW01_07555 0.53 -0.4
1,617,687 + CSW01_07555 0.54 -0.1
1,617,694 - CSW01_07555 0.54 +0.2
1,617,699 + CSW01_07555 0.55 -1.4
1,617,699 + CSW01_07555 0.55 +0.3
1,617,707 - CSW01_07555 0.55 -3.3
1,617,788 - CSW01_07555 0.61 -0.3
1,617,842 - CSW01_07555 0.65 +0.3
1,618,223 + -0.2
1,618,365 + CSW01_07560 0.13 -0.2
1,618,365 + CSW01_07560 0.13 -0.4
1,618,365 + CSW01_07560 0.13 +0.6
1,618,365 + CSW01_07560 0.13 -3.2
1,618,365 + CSW01_07560 0.13 -0.3
1,618,365 + CSW01_07560 0.13 +0.5
1,618,365 + CSW01_07560 0.13 -0.9
1,618,365 + CSW01_07560 0.13 +1.2
1,618,365 + CSW01_07560 0.13 +1.2
1,618,365 + CSW01_07560 0.13 -0.0
1,618,373 - CSW01_07560 0.15 +0.7
1,618,373 - CSW01_07560 0.15 -0.2
1,618,373 - CSW01_07560 0.15 +0.2
1,618,373 - CSW01_07560 0.15 -1.1
1,618,373 - CSW01_07560 0.15 -0.3
1,618,373 - CSW01_07560 0.15 -0.2
1,618,373 - CSW01_07560 0.15 -0.2
1,618,373 - CSW01_07560 0.15 -0.9
1,618,373 - CSW01_07560 0.15 +0.3
1,618,373 - CSW01_07560 0.15 +0.4
1,618,373 - CSW01_07560 0.15 +0.9
1,618,373 - CSW01_07560 0.15 -0.6
1,618,373 - CSW01_07560 0.15 +0.8
1,618,383 - CSW01_07560 0.17 -0.5
1,618,392 + CSW01_07560 0.19 -1.0
1,618,392 - CSW01_07560 0.19 -0.0
1,618,424 + CSW01_07560 0.25 -0.9
1,618,548 + CSW01_07560 0.51 -0.4
1,618,558 + CSW01_07560 0.53 +0.3
1,618,660 - CSW01_07560 0.75 -0.7
1,618,670 - CSW01_07560 0.77 -0.3
1,618,719 - CSW01_07560 0.87 -1.1
1,618,740 + +1.0
1,618,740 + +0.9
1,618,745 + +0.4
1,618,748 - -1.6
1,618,748 - +1.1
1,618,748 - -1.7
1,618,768 + -0.1
1,618,776 - -0.8
1,619,020 + -0.0
1,619,115 + -1.8
1,619,138 - +1.2
1,619,272 - CSW01_07565 0.20 -0.5

Or see this region's nucleotide sequence