Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06290

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06285 and CSW01_06290 overlap by 14 nucleotidesCSW01_06290 and CSW01_06295 are separated by 384 nucleotides CSW01_06285: CSW01_06285 - vitamin B12 ABC transporter permease BtuC, at 1,314,657 to 1,315,664 _06285 CSW01_06290: CSW01_06290 - vitamin B12 import ATP-binding protein BtuD, at 1,315,651 to 1,316,406 _06290 CSW01_06295: CSW01_06295 - SAM-dependent methyltransferase, at 1,316,791 to 1,317,366 _06295 Position (kb) 1315 1316 1317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1314.691 kb on + strandat 1314.721 kb on - strandat 1314.740 kb on + strandat 1314.853 kb on - strand, within CSW01_06285at 1314.901 kb on + strand, within CSW01_06285at 1314.909 kb on - strand, within CSW01_06285at 1315.072 kb on - strand, within CSW01_06285at 1315.100 kb on - strand, within CSW01_06285at 1315.218 kb on - strand, within CSW01_06285at 1315.290 kb on + strand, within CSW01_06285at 1315.447 kb on + strand, within CSW01_06285at 1315.479 kb on - strand, within CSW01_06285at 1315.574 kb on - strandat 1315.574 kb on - strandat 1315.617 kb on - strandat 1315.667 kb on + strandat 1315.674 kb on + strandat 1315.675 kb on - strandat 1315.675 kb on - strandat 1315.705 kb on - strandat 1315.805 kb on - strand, within CSW01_06290at 1315.805 kb on - strand, within CSW01_06290at 1315.811 kb on + strand, within CSW01_06290at 1315.812 kb on + strand, within CSW01_06290at 1315.815 kb on - strand, within CSW01_06290at 1315.820 kb on + strand, within CSW01_06290at 1315.828 kb on - strand, within CSW01_06290at 1315.927 kb on - strand, within CSW01_06290at 1315.956 kb on - strand, within CSW01_06290at 1315.958 kb on + strand, within CSW01_06290at 1316.022 kb on - strand, within CSW01_06290at 1316.088 kb on + strand, within CSW01_06290at 1316.146 kb on + strand, within CSW01_06290at 1316.146 kb on + strand, within CSW01_06290at 1316.154 kb on - strand, within CSW01_06290at 1316.154 kb on - strand, within CSW01_06290at 1316.154 kb on - strand, within CSW01_06290at 1316.190 kb on + strand, within CSW01_06290at 1316.260 kb on + strand, within CSW01_06290at 1316.260 kb on + strand, within CSW01_06290at 1316.268 kb on - strand, within CSW01_06290at 1316.274 kb on + strand, within CSW01_06290at 1316.279 kb on + strand, within CSW01_06290at 1316.287 kb on + strand, within CSW01_06290at 1316.287 kb on + strand, within CSW01_06290at 1316.287 kb on + strand, within CSW01_06290at 1316.287 kb on + strand, within CSW01_06290at 1316.332 kb on + strandat 1316.628 kb on - strandat 1316.654 kb on - strandat 1316.663 kb on + strandat 1316.663 kb on + strandat 1316.696 kb on - strandat 1316.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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1,314,691 + +0.8
1,314,721 - +1.5
1,314,740 + -1.6
1,314,853 - CSW01_06285 0.19 -1.0
1,314,901 + CSW01_06285 0.24 -2.0
1,314,909 - CSW01_06285 0.25 +0.9
1,315,072 - CSW01_06285 0.41 -0.2
1,315,100 - CSW01_06285 0.44 -0.6
1,315,218 - CSW01_06285 0.56 -0.8
1,315,290 + CSW01_06285 0.63 -1.2
1,315,447 + CSW01_06285 0.78 -0.7
1,315,479 - CSW01_06285 0.82 -0.1
1,315,574 - -0.4
1,315,574 - -0.1
1,315,617 - -1.1
1,315,667 + +0.4
1,315,674 + +0.1
1,315,675 - +0.0
1,315,675 - -0.8
1,315,705 - +0.2
1,315,805 - CSW01_06290 0.20 -1.1
1,315,805 - CSW01_06290 0.20 +0.2
1,315,811 + CSW01_06290 0.21 -0.5
1,315,812 + CSW01_06290 0.21 -0.1
1,315,815 - CSW01_06290 0.22 -2.1
1,315,820 + CSW01_06290 0.22 -1.0
1,315,828 - CSW01_06290 0.23 +0.2
1,315,927 - CSW01_06290 0.37 -0.5
1,315,956 - CSW01_06290 0.40 -3.9
1,315,958 + CSW01_06290 0.41 +0.8
1,316,022 - CSW01_06290 0.49 -0.0
1,316,088 + CSW01_06290 0.58 +0.2
1,316,146 + CSW01_06290 0.65 +1.2
1,316,146 + CSW01_06290 0.65 -1.2
1,316,154 - CSW01_06290 0.67 -0.8
1,316,154 - CSW01_06290 0.67 -0.7
1,316,154 - CSW01_06290 0.67 +0.5
1,316,190 + CSW01_06290 0.71 -0.0
1,316,260 + CSW01_06290 0.81 +1.7
1,316,260 + CSW01_06290 0.81 -0.0
1,316,268 - CSW01_06290 0.82 -2.1
1,316,274 + CSW01_06290 0.82 +0.6
1,316,279 + CSW01_06290 0.83 +0.1
1,316,287 + CSW01_06290 0.84 -0.3
1,316,287 + CSW01_06290 0.84 -1.5
1,316,287 + CSW01_06290 0.84 +0.6
1,316,287 + CSW01_06290 0.84 -0.3
1,316,332 + +1.8
1,316,628 - -0.1
1,316,654 - +0.7
1,316,663 + +0.4
1,316,663 + +0.1
1,316,696 - +1.0
1,316,809 + -1.2

Or see this region's nucleotide sequence