Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_04695 and CSW01_04700 are separated by 426 nucleotides CSW01_04700 and CSW01_04705 are separated by 312 nucleotides
CSW01_04695: CSW01_04695 - AcrB/AcrD/AcrF family protein, at 973,846 to 976,956
_04695
CSW01_04700: CSW01_04700 - low molecular weight phosphotyrosine protein phosphatase, at 977,383 to 977,883
_04700
CSW01_04705: CSW01_04705 - UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing), at 978,196 to 979,314
_04705
Position (kb) 977
978 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 976.660 kb on - strand at 976.708 kb on - strand at 976.726 kb on + strand at 976.739 kb on - strand at 976.744 kb on - strand at 976.753 kb on - strand at 976.768 kb on + strand at 976.776 kb on - strand at 976.776 kb on - strand at 976.776 kb on - strand at 976.882 kb on - strand at 976.896 kb on + strand at 976.901 kb on + strand at 976.906 kb on + strand at 976.906 kb on + strand at 976.906 kb on + strand at 976.908 kb on + strand at 976.913 kb on + strand at 976.913 kb on + strand at 976.913 kb on + strand at 976.913 kb on + strand at 976.914 kb on - strand at 976.916 kb on - strand at 976.921 kb on - strand at 976.921 kb on - strand at 976.921 kb on - strand at 976.921 kb on - strand at 976.933 kb on + strand at 976.941 kb on - strand at 976.953 kb on - strand at 976.966 kb on + strand at 976.973 kb on + strand at 976.974 kb on - strand at 976.990 kb on + strand at 977.052 kb on + strand at 977.058 kb on + strand at 977.065 kb on - strand at 977.065 kb on - strand at 977.118 kb on - strand at 977.128 kb on - strand at 977.311 kb on + strand at 977.311 kb on + strand at 977.315 kb on + strand at 977.319 kb on - strand at 977.319 kb on - strand at 977.319 kb on - strand at 977.319 kb on - strand at 977.356 kb on + strand at 977.379 kb on + strand at 977.381 kb on + strand at 977.381 kb on + strand at 977.381 kb on - strand at 977.388 kb on + strand at 977.388 kb on + strand at 977.388 kb on + strand at 977.389 kb on - strand at 977.395 kb on + strand at 977.396 kb on - strand at 977.396 kb on - strand at 977.396 kb on - strand at 977.396 kb on - strand at 977.402 kb on - strand at 977.413 kb on - strand at 977.413 kb on - strand at 977.413 kb on - strand at 977.415 kb on + strand at 977.482 kb on + strand, within CSW01_04700 at 977.504 kb on + strand, within CSW01_04700 at 977.504 kb on + strand, within CSW01_04700 at 977.507 kb on - strand, within CSW01_04700 at 977.512 kb on - strand, within CSW01_04700 at 977.512 kb on - strand, within CSW01_04700 at 977.512 kb on - strand, within CSW01_04700 at 977.512 kb on - strand, within CSW01_04700 at 977.512 kb on - strand, within CSW01_04700 at 977.522 kb on - strand, within CSW01_04700 at 977.551 kb on + strand, within CSW01_04700 at 977.551 kb on + strand, within CSW01_04700 at 977.551 kb on + strand, within CSW01_04700 at 977.557 kb on - strand, within CSW01_04700 at 977.558 kb on - strand, within CSW01_04700 at 977.559 kb on - strand, within CSW01_04700 at 977.565 kb on + strand, within CSW01_04700 at 977.573 kb on - strand, within CSW01_04700 at 977.573 kb on - strand, within CSW01_04700 at 977.580 kb on + strand, within CSW01_04700 at 977.580 kb on + strand, within CSW01_04700 at 977.582 kb on - strand, within CSW01_04700 at 977.584 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.586 kb on + strand, within CSW01_04700 at 977.588 kb on - strand, within CSW01_04700 at 977.592 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.594 kb on - strand, within CSW01_04700 at 977.640 kb on - strand, within CSW01_04700 at 977.642 kb on + strand, within CSW01_04700 at 977.649 kb on + strand, within CSW01_04700 at 977.649 kb on + strand, within CSW01_04700 at 977.650 kb on - strand, within CSW01_04700 at 977.655 kb on + strand, within CSW01_04700 at 977.684 kb on + strand, within CSW01_04700 at 977.697 kb on - strand, within CSW01_04700 at 977.759 kb on - strand, within CSW01_04700 at 977.766 kb on + strand, within CSW01_04700 at 977.795 kb on - strand, within CSW01_04700 at 977.802 kb on + strand, within CSW01_04700 at 977.802 kb on - strand, within CSW01_04700 at 977.810 kb on + strand, within CSW01_04700 at 977.820 kb on + strand, within CSW01_04700 at 977.826 kb on + strand, within CSW01_04700 at 977.828 kb on - strand, within CSW01_04700 at 977.842 kb on + strand at 977.849 kb on + strand at 977.849 kb on + strand at 977.849 kb on + strand at 977.849 kb on + strand at 977.850 kb on - strand at 977.857 kb on - strand at 977.857 kb on - strand at 977.911 kb on - strand at 978.100 kb on - strand at 978.120 kb on - strand at 978.121 kb on - strand at 978.123 kb on - strand at 978.134 kb on - strand at 978.134 kb on - strand at 978.145 kb on - strand at 978.146 kb on - strand at 978.185 kb on + strand at 978.192 kb on - strand at 978.228 kb on + strand at 978.294 kb on + strand at 978.307 kb on + strand at 978.307 kb on + strand at 978.307 kb on + strand at 978.307 kb on + strand at 978.307 kb on + strand at 978.315 kb on - strand, within CSW01_04705 at 978.315 kb on - strand, within CSW01_04705 at 978.315 kb on - strand, within CSW01_04705 at 978.315 kb on - strand, within CSW01_04705 at 978.345 kb on + strand, within CSW01_04705 at 978.374 kb on + strand, within CSW01_04705 at 978.389 kb on + strand, within CSW01_04705 at 978.411 kb on - strand, within CSW01_04705 at 978.411 kb on - strand, within CSW01_04705 at 978.439 kb on + strand, within CSW01_04705 at 978.439 kb on + strand, within CSW01_04705 at 978.447 kb on - strand, within CSW01_04705 at 978.447 kb on - strand, within CSW01_04705 at 978.456 kb on + strand, within CSW01_04705 at 978.479 kb on + strand, within CSW01_04705 at 978.546 kb on - strand, within CSW01_04705 at 978.573 kb on - strand, within CSW01_04705 at 978.579 kb on + strand, within CSW01_04705 at 978.584 kb on + strand, within CSW01_04705 at 978.592 kb on - strand, within CSW01_04705 at 978.592 kb on - strand, within CSW01_04705 at 978.592 kb on - strand, within CSW01_04705 at 978.627 kb on + strand, within CSW01_04705 at 978.627 kb on + strand, within CSW01_04705 at 978.632 kb on + strand, within CSW01_04705 at 978.635 kb on - strand, within CSW01_04705 at 978.635 kb on - strand, within CSW01_04705 at 978.650 kb on - strand, within CSW01_04705 at 978.712 kb on - strand, within CSW01_04705 at 978.725 kb on - strand, within CSW01_04705 at 978.726 kb on + strand, within CSW01_04705 at 978.840 kb on - strand, within CSW01_04705
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B remove 976,660 - +0.0 976,708 - -0.1 976,726 + -0.6 976,739 - +1.4 976,744 - -0.4 976,753 - +0.2 976,768 + -0.5 976,776 - -0.8 976,776 - -0.2 976,776 - -0.0 976,882 - -0.3 976,896 + -0.2 976,901 + -0.5 976,906 + +1.1 976,906 + -0.7 976,906 + +1.0 976,908 + -0.5 976,913 + -0.4 976,913 + -1.4 976,913 + -2.1 976,913 + -1.7 976,914 - -0.2 976,916 - +0.5 976,921 - -0.4 976,921 - +0.5 976,921 - +0.2 976,921 - +2.3 976,933 + -1.0 976,941 - +1.1 976,953 - -0.4 976,966 + +0.2 976,973 + -1.9 976,974 - -3.5 976,990 + +0.3 977,052 + -0.1 977,058 + -0.3 977,065 - -0.3 977,065 - -0.3 977,118 - +0.3 977,128 - -0.5 977,311 + -0.6 977,311 + -1.1 977,315 + +0.9 977,319 - +0.4 977,319 - -0.9 977,319 - -0.4 977,319 - +0.5 977,356 + -0.0 977,379 + -0.2 977,381 + -0.4 977,381 + -0.7 977,381 - +0.1 977,388 + +0.0 977,388 + -0.6 977,388 + +1.1 977,389 - +0.9 977,395 + -0.6 977,396 - -1.5 977,396 - -0.3 977,396 - -0.6 977,396 - -0.9 977,402 - -0.2 977,413 - +0.3 977,413 - +0.9 977,413 - -0.4 977,415 + +0.2 977,482 + CSW01_04700 0.20 +0.1 977,504 + CSW01_04700 0.24 +1.9 977,504 + CSW01_04700 0.24 +0.5 977,507 - CSW01_04700 0.25 +0.4 977,512 - CSW01_04700 0.26 -0.0 977,512 - CSW01_04700 0.26 +0.5 977,512 - CSW01_04700 0.26 -0.2 977,512 - CSW01_04700 0.26 +1.2 977,512 - CSW01_04700 0.26 -0.2 977,522 - CSW01_04700 0.28 -0.9 977,551 + CSW01_04700 0.34 -0.4 977,551 + CSW01_04700 0.34 +0.8 977,551 + CSW01_04700 0.34 -0.2 977,557 - CSW01_04700 0.35 -0.7 977,558 - CSW01_04700 0.35 -1.2 977,559 - CSW01_04700 0.35 +0.7 977,565 + CSW01_04700 0.36 -3.0 977,573 - CSW01_04700 0.38 -3.2 977,573 - CSW01_04700 0.38 +0.5 977,580 + CSW01_04700 0.39 -0.1 977,580 + CSW01_04700 0.39 +0.3 977,582 - CSW01_04700 0.40 +0.7 977,584 + CSW01_04700 0.40 +0.4 977,586 + CSW01_04700 0.41 +0.9 977,586 + CSW01_04700 0.41 +0.8 977,586 + CSW01_04700 0.41 -1.7 977,586 + CSW01_04700 0.41 +0.5 977,586 + CSW01_04700 0.41 +1.2 977,586 + CSW01_04700 0.41 +0.4 977,586 + CSW01_04700 0.41 -1.0 977,588 - CSW01_04700 0.41 +0.5 977,592 - CSW01_04700 0.42 +0.4 977,594 - CSW01_04700 0.42 -1.8 977,594 - CSW01_04700 0.42 +1.4 977,594 - CSW01_04700 0.42 +0.1 977,594 - CSW01_04700 0.42 -0.5 977,594 - CSW01_04700 0.42 -0.5 977,594 - CSW01_04700 0.42 +0.1 977,594 - CSW01_04700 0.42 +0.3 977,640 - CSW01_04700 0.51 +0.5 977,642 + CSW01_04700 0.52 -0.9 977,649 + CSW01_04700 0.53 -0.1 977,649 + CSW01_04700 0.53 -0.5 977,650 - CSW01_04700 0.53 -0.4 977,655 + CSW01_04700 0.54 -0.5 977,684 + CSW01_04700 0.60 +0.8 977,697 - CSW01_04700 0.63 +0.7 977,759 - CSW01_04700 0.75 -0.4 977,766 + CSW01_04700 0.76 -0.6 977,795 - CSW01_04700 0.82 -0.6 977,802 + CSW01_04700 0.84 +1.0 977,802 - CSW01_04700 0.84 -0.1 977,810 + CSW01_04700 0.85 +0.3 977,820 + CSW01_04700 0.87 -0.0 977,826 + CSW01_04700 0.88 +0.7 977,828 - CSW01_04700 0.89 +1.7 977,842 + +0.5 977,849 + +0.7 977,849 + +0.4 977,849 + -0.8 977,849 + -0.2 977,850 - +0.6 977,857 - +0.1 977,857 - +1.3 977,911 - -0.9 978,100 - -0.5 978,120 - +1.3 978,121 - +0.0 978,123 - -0.4 978,134 - -0.2 978,134 - -0.5 978,145 - +1.0 978,146 - +0.5 978,185 + -0.3 978,192 - +0.7 978,228 + -0.5 978,294 + -0.3 978,307 + -0.7 978,307 + +0.8 978,307 + -0.2 978,307 + +0.6 978,307 + -0.5 978,315 - CSW01_04705 0.11 -0.2 978,315 - CSW01_04705 0.11 -0.1 978,315 - CSW01_04705 0.11 -0.3 978,315 - CSW01_04705 0.11 +0.0 978,345 + CSW01_04705 0.13 +0.2 978,374 + CSW01_04705 0.16 -0.2 978,389 + CSW01_04705 0.17 +0.4 978,411 - CSW01_04705 0.19 +0.2 978,411 - CSW01_04705 0.19 +0.3 978,439 + CSW01_04705 0.22 +0.5 978,439 + CSW01_04705 0.22 -1.1 978,447 - CSW01_04705 0.22 -0.1 978,447 - CSW01_04705 0.22 +0.4 978,456 + CSW01_04705 0.23 +1.5 978,479 + CSW01_04705 0.25 -1.9 978,546 - CSW01_04705 0.31 +0.1 978,573 - CSW01_04705 0.34 +2.3 978,579 + CSW01_04705 0.34 -1.1 978,584 + CSW01_04705 0.35 -0.1 978,592 - CSW01_04705 0.35 -0.3 978,592 - CSW01_04705 0.35 -0.7 978,592 - CSW01_04705 0.35 -0.4 978,627 + CSW01_04705 0.39 +0.8 978,627 + CSW01_04705 0.39 +0.2 978,632 + CSW01_04705 0.39 -0.5 978,635 - CSW01_04705 0.39 +0.8 978,635 - CSW01_04705 0.39 -0.3 978,650 - CSW01_04705 0.41 +0.3 978,712 - CSW01_04705 0.46 -1.7 978,725 - CSW01_04705 0.47 -0.9 978,726 + CSW01_04705 0.47 +0.2 978,840 - CSW01_04705 0.58 -3.5
Or see this region's nucleotide sequence