Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04635

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04625 and CSW01_04630 are separated by 1 nucleotidesCSW01_04630 and CSW01_04635 are separated by 132 nucleotidesCSW01_04635 and CSW01_04640 are separated by 36 nucleotidesCSW01_04640 and CSW01_04645 overlap by 11 nucleotides CSW01_04625: CSW01_04625 - SecY-interacting protein, at 962,425 to 963,021 _04625 CSW01_04630: CSW01_04630 - hypothetical protein, at 963,023 to 963,799 _04630 CSW01_04635: CSW01_04635 - methionine ABC transporter substrate-binding protein MetQ, at 963,932 to 964,741 _04635 CSW01_04640: CSW01_04640 - methionine ABC transporter permease, at 964,778 to 965,455 _04640 CSW01_04645: CSW01_04645 - methionine import ATP-binding protein MetN, at 965,445 to 966,479 _04645 Position (kb) 963 964 965Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 962.941 kb on + strand, within CSW01_04625at 962.943 kb on + strand, within CSW01_04625at 962.973 kb on - strandat 963.062 kb on + strandat 963.087 kb on - strandat 963.095 kb on + strandat 963.136 kb on - strand, within CSW01_04630at 963.136 kb on - strand, within CSW01_04630at 963.136 kb on - strand, within CSW01_04630at 963.136 kb on - strand, within CSW01_04630at 963.160 kb on - strand, within CSW01_04630at 963.242 kb on + strand, within CSW01_04630at 963.252 kb on + strand, within CSW01_04630at 963.304 kb on + strand, within CSW01_04630at 963.309 kb on + strand, within CSW01_04630at 963.317 kb on - strand, within CSW01_04630at 963.317 kb on - strand, within CSW01_04630at 963.360 kb on + strand, within CSW01_04630at 963.368 kb on + strand, within CSW01_04630at 963.376 kb on + strand, within CSW01_04630at 963.376 kb on - strand, within CSW01_04630at 963.378 kb on - strand, within CSW01_04630at 963.383 kb on + strand, within CSW01_04630at 963.391 kb on - strand, within CSW01_04630at 963.446 kb on - strand, within CSW01_04630at 963.459 kb on - strand, within CSW01_04630at 963.517 kb on + strand, within CSW01_04630at 963.524 kb on + strand, within CSW01_04630at 963.525 kb on - strand, within CSW01_04630at 963.530 kb on - strand, within CSW01_04630at 963.574 kb on - strand, within CSW01_04630at 963.619 kb on + strand, within CSW01_04630at 963.663 kb on - strand, within CSW01_04630at 963.682 kb on + strand, within CSW01_04630at 963.682 kb on + strand, within CSW01_04630at 963.682 kb on + strand, within CSW01_04630at 963.701 kb on + strand, within CSW01_04630at 963.725 kb on + strandat 963.755 kb on - strandat 963.874 kb on + strandat 963.962 kb on - strandat 963.983 kb on - strandat 964.036 kb on + strand, within CSW01_04635at 964.125 kb on - strand, within CSW01_04635at 964.148 kb on - strand, within CSW01_04635at 964.164 kb on - strand, within CSW01_04635at 964.186 kb on + strand, within CSW01_04635at 964.253 kb on - strand, within CSW01_04635at 964.298 kb on + strand, within CSW01_04635at 964.321 kb on - strand, within CSW01_04635at 964.384 kb on + strand, within CSW01_04635at 964.384 kb on + strand, within CSW01_04635at 964.392 kb on - strand, within CSW01_04635at 964.392 kb on - strand, within CSW01_04635at 964.392 kb on - strand, within CSW01_04635at 964.392 kb on - strand, within CSW01_04635at 964.478 kb on + strand, within CSW01_04635at 964.519 kb on - strand, within CSW01_04635at 964.657 kb on - strand, within CSW01_04635at 964.657 kb on - strand, within CSW01_04635at 964.729 kb on + strandat 964.913 kb on + strand, within CSW01_04640at 964.913 kb on + strand, within CSW01_04640at 964.918 kb on + strand, within CSW01_04640at 965.015 kb on + strand, within CSW01_04640at 965.015 kb on + strand, within CSW01_04640at 965.023 kb on - strand, within CSW01_04640at 965.023 kb on - strand, within CSW01_04640at 965.052 kb on + strand, within CSW01_04640at 965.081 kb on + strand, within CSW01_04640at 965.088 kb on + strand, within CSW01_04640at 965.096 kb on - strand, within CSW01_04640at 965.103 kb on + strand, within CSW01_04640at 965.255 kb on - strand, within CSW01_04640at 965.266 kb on + strand, within CSW01_04640at 965.279 kb on - strand, within CSW01_04640at 965.281 kb on - strand, within CSW01_04640at 965.283 kb on + strand, within CSW01_04640at 965.320 kb on + strand, within CSW01_04640at 965.322 kb on + strand, within CSW01_04640at 965.381 kb on - strand, within CSW01_04640at 965.405 kb on - strandat 965.450 kb on + strandat 965.460 kb on - strandat 965.465 kb on - strandat 965.571 kb on - strand, within CSW01_04645at 965.574 kb on + strand, within CSW01_04645at 965.574 kb on + strand, within CSW01_04645at 965.574 kb on + strand, within CSW01_04645at 965.574 kb on + strand, within CSW01_04645at 965.582 kb on - strand, within CSW01_04645at 965.582 kb on - strand, within CSW01_04645at 965.582 kb on - strand, within CSW01_04645at 965.600 kb on + strand, within CSW01_04645

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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962,941 + CSW01_04625 0.86 -0.2
962,943 + CSW01_04625 0.87 -0.1
962,973 - -0.2
963,062 + -1.5
963,087 - -0.1
963,095 + +0.7
963,136 - CSW01_04630 0.15 -0.3
963,136 - CSW01_04630 0.15 -0.5
963,136 - CSW01_04630 0.15 -1.3
963,136 - CSW01_04630 0.15 -1.2
963,160 - CSW01_04630 0.18 -1.1
963,242 + CSW01_04630 0.28 +0.2
963,252 + CSW01_04630 0.29 +0.5
963,304 + CSW01_04630 0.36 -0.1
963,309 + CSW01_04630 0.37 +0.0
963,317 - CSW01_04630 0.38 -0.7
963,317 - CSW01_04630 0.38 -1.9
963,360 + CSW01_04630 0.43 -0.6
963,368 + CSW01_04630 0.44 +0.8
963,376 + CSW01_04630 0.45 +1.2
963,376 - CSW01_04630 0.45 +1.2
963,378 - CSW01_04630 0.46 +0.2
963,383 + CSW01_04630 0.46 +4.2
963,391 - CSW01_04630 0.47 -0.2
963,446 - CSW01_04630 0.54 -0.9
963,459 - CSW01_04630 0.56 -0.7
963,517 + CSW01_04630 0.64 -0.6
963,524 + CSW01_04630 0.64 -0.7
963,525 - CSW01_04630 0.65 -0.8
963,530 - CSW01_04630 0.65 -0.6
963,574 - CSW01_04630 0.71 +0.8
963,619 + CSW01_04630 0.77 -0.3
963,663 - CSW01_04630 0.82 -1.2
963,682 + CSW01_04630 0.85 -0.6
963,682 + CSW01_04630 0.85 +0.3
963,682 + CSW01_04630 0.85 +2.2
963,701 + CSW01_04630 0.87 -1.0
963,725 + -0.0
963,755 - +0.7
963,874 + +0.3
963,962 - -0.4
963,983 - -0.3
964,036 + CSW01_04635 0.13 -0.2
964,125 - CSW01_04635 0.24 +3.6
964,148 - CSW01_04635 0.27 +0.2
964,164 - CSW01_04635 0.29 +0.0
964,186 + CSW01_04635 0.31 -1.5
964,253 - CSW01_04635 0.40 -0.8
964,298 + CSW01_04635 0.45 -0.9
964,321 - CSW01_04635 0.48 -0.0
964,384 + CSW01_04635 0.56 -0.8
964,384 + CSW01_04635 0.56 -0.5
964,392 - CSW01_04635 0.57 -3.6
964,392 - CSW01_04635 0.57 -0.1
964,392 - CSW01_04635 0.57 +0.1
964,392 - CSW01_04635 0.57 -0.1
964,478 + CSW01_04635 0.67 +2.9
964,519 - CSW01_04635 0.72 +0.1
964,657 - CSW01_04635 0.90 -0.5
964,657 - CSW01_04635 0.90 -1.1
964,729 + -0.3
964,913 + CSW01_04640 0.20 -0.8
964,913 + CSW01_04640 0.20 +1.3
964,918 + CSW01_04640 0.21 +1.0
965,015 + CSW01_04640 0.35 +0.8
965,015 + CSW01_04640 0.35 +0.0
965,023 - CSW01_04640 0.36 +0.5
965,023 - CSW01_04640 0.36 +0.7
965,052 + CSW01_04640 0.40 +0.0
965,081 + CSW01_04640 0.45 +0.4
965,088 + CSW01_04640 0.46 +0.2
965,096 - CSW01_04640 0.47 +0.3
965,103 + CSW01_04640 0.48 -0.4
965,255 - CSW01_04640 0.70 +1.2
965,266 + CSW01_04640 0.72 -0.9
965,279 - CSW01_04640 0.74 -0.6
965,281 - CSW01_04640 0.74 -0.5
965,283 + CSW01_04640 0.74 -0.3
965,320 + CSW01_04640 0.80 -0.7
965,322 + CSW01_04640 0.80 +0.2
965,381 - CSW01_04640 0.89 -1.4
965,405 - +1.2
965,450 + -1.1
965,460 - +0.3
965,465 - -0.5
965,571 - CSW01_04645 0.12 +0.7
965,574 + CSW01_04645 0.12 +0.1
965,574 + CSW01_04645 0.12 -0.6
965,574 + CSW01_04645 0.12 +0.1
965,574 + CSW01_04645 0.12 +0.3
965,582 - CSW01_04645 0.13 -0.0
965,582 - CSW01_04645 0.13 -0.3
965,582 - CSW01_04645 0.13 -0.5
965,600 + CSW01_04645 0.15 -0.5

Or see this region's nucleotide sequence