Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04615

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04610 and CSW01_04615 are separated by 101 nucleotidesCSW01_04615 and CSW01_04620 are separated by 14 nucleotidesCSW01_04620 and CSW01_04625 are separated by 48 nucleotides CSW01_04610: CSW01_04610 - GGDEF domain-containing protein, at 957,579 to 959,153 _04610 CSW01_04615: CSW01_04615 - hypothetical protein, at 959,255 to 961,516 _04615 CSW01_04620: CSW01_04620 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 961,531 to 962,376 _04620 CSW01_04625: CSW01_04625 - SecY-interacting protein, at 962,425 to 963,021 _04625 Position (kb) 959 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 958.265 kb on - strand, within CSW01_04610at 958.289 kb on + strand, within CSW01_04610at 958.289 kb on + strand, within CSW01_04610at 958.297 kb on - strand, within CSW01_04610at 958.307 kb on - strand, within CSW01_04610at 958.422 kb on - strand, within CSW01_04610at 958.423 kb on + strand, within CSW01_04610at 958.466 kb on + strand, within CSW01_04610at 958.474 kb on - strand, within CSW01_04610at 958.474 kb on - strand, within CSW01_04610at 958.487 kb on + strand, within CSW01_04610at 958.487 kb on + strand, within CSW01_04610at 958.487 kb on + strand, within CSW01_04610at 958.487 kb on + strand, within CSW01_04610at 958.487 kb on + strand, within CSW01_04610at 958.488 kb on + strand, within CSW01_04610at 958.495 kb on - strand, within CSW01_04610at 958.495 kb on - strand, within CSW01_04610at 958.495 kb on - strand, within CSW01_04610at 958.495 kb on - strand, within CSW01_04610at 958.495 kb on - strand, within CSW01_04610at 958.641 kb on - strand, within CSW01_04610at 958.805 kb on + strand, within CSW01_04610at 958.818 kb on + strand, within CSW01_04610at 959.059 kb on + strandat 959.116 kb on + strandat 959.140 kb on + strandat 959.176 kb on - strandat 959.259 kb on - strandat 959.302 kb on - strandat 959.310 kb on + strandat 959.310 kb on + strandat 959.318 kb on - strandat 959.398 kb on + strandat 959.425 kb on - strandat 959.428 kb on + strandat 959.435 kb on + strandat 959.435 kb on + strandat 959.438 kb on - strandat 959.442 kb on - strandat 959.443 kb on - strandat 959.443 kb on - strandat 959.443 kb on - strandat 959.447 kb on + strandat 959.502 kb on + strand, within CSW01_04615at 959.510 kb on - strand, within CSW01_04615at 959.510 kb on - strand, within CSW01_04615at 959.510 kb on - strand, within CSW01_04615at 959.767 kb on + strand, within CSW01_04615at 959.780 kb on + strand, within CSW01_04615at 959.812 kb on + strand, within CSW01_04615at 959.820 kb on - strand, within CSW01_04615at 959.850 kb on - strand, within CSW01_04615at 959.862 kb on + strand, within CSW01_04615at 959.865 kb on - strand, within CSW01_04615at 959.932 kb on + strand, within CSW01_04615at 960.008 kb on - strand, within CSW01_04615at 960.039 kb on - strand, within CSW01_04615at 960.039 kb on - strand, within CSW01_04615at 960.039 kb on - strand, within CSW01_04615at 960.047 kb on + strand, within CSW01_04615at 960.255 kb on - strand, within CSW01_04615at 960.300 kb on - strand, within CSW01_04615at 960.321 kb on + strand, within CSW01_04615at 960.387 kb on + strand, within CSW01_04615at 960.388 kb on - strand, within CSW01_04615at 960.398 kb on - strand, within CSW01_04615at 960.438 kb on + strand, within CSW01_04615at 960.443 kb on - strand, within CSW01_04615at 960.456 kb on - strand, within CSW01_04615at 960.458 kb on + strand, within CSW01_04615at 960.458 kb on + strand, within CSW01_04615at 960.467 kb on - strand, within CSW01_04615at 960.467 kb on - strand, within CSW01_04615at 960.477 kb on - strand, within CSW01_04615at 960.501 kb on - strand, within CSW01_04615at 960.599 kb on - strand, within CSW01_04615at 960.696 kb on + strand, within CSW01_04615at 960.719 kb on + strand, within CSW01_04615at 960.719 kb on + strand, within CSW01_04615at 960.719 kb on + strand, within CSW01_04615at 960.719 kb on + strand, within CSW01_04615at 960.727 kb on - strand, within CSW01_04615at 960.727 kb on - strand, within CSW01_04615at 960.727 kb on - strand, within CSW01_04615at 960.767 kb on - strand, within CSW01_04615at 960.767 kb on - strand, within CSW01_04615at 960.781 kb on + strand, within CSW01_04615at 960.791 kb on + strand, within CSW01_04615at 960.847 kb on - strand, within CSW01_04615at 960.855 kb on - strand, within CSW01_04615at 960.875 kb on + strand, within CSW01_04615at 960.876 kb on - strand, within CSW01_04615at 960.878 kb on - strand, within CSW01_04615at 960.927 kb on + strand, within CSW01_04615at 960.927 kb on + strand, within CSW01_04615at 960.935 kb on - strand, within CSW01_04615at 960.993 kb on - strand, within CSW01_04615at 961.000 kb on + strand, within CSW01_04615at 961.027 kb on - strand, within CSW01_04615at 961.050 kb on + strand, within CSW01_04615at 961.080 kb on - strand, within CSW01_04615at 961.136 kb on - strand, within CSW01_04615at 961.144 kb on - strand, within CSW01_04615at 961.186 kb on - strand, within CSW01_04615at 961.360 kb on + strandat 961.360 kb on + strandat 961.360 kb on + strandat 961.360 kb on + strandat 961.368 kb on - strandat 961.368 kb on - strandat 961.368 kb on - strandat 961.405 kb on - strandat 961.430 kb on + strandat 961.437 kb on + strandat 961.445 kb on - strandat 961.445 kb on - strandat 961.522 kb on + strandat 961.524 kb on - strandat 961.566 kb on - strandat 961.589 kb on + strandat 961.597 kb on + strandat 961.597 kb on + strandat 961.605 kb on - strandat 961.634 kb on + strand, within CSW01_04620at 961.634 kb on + strand, within CSW01_04620at 961.634 kb on + strand, within CSW01_04620at 961.634 kb on + strand, within CSW01_04620at 961.647 kb on + strand, within CSW01_04620at 961.693 kb on - strand, within CSW01_04620at 961.717 kb on + strand, within CSW01_04620at 961.727 kb on + strand, within CSW01_04620at 961.727 kb on + strand, within CSW01_04620at 961.735 kb on + strand, within CSW01_04620at 961.735 kb on - strand, within CSW01_04620at 961.735 kb on - strand, within CSW01_04620at 961.756 kb on - strand, within CSW01_04620at 961.783 kb on - strand, within CSW01_04620at 961.842 kb on + strand, within CSW01_04620at 961.845 kb on - strand, within CSW01_04620at 961.854 kb on + strand, within CSW01_04620at 961.856 kb on + strand, within CSW01_04620at 961.856 kb on + strand, within CSW01_04620at 961.856 kb on + strand, within CSW01_04620at 961.856 kb on + strand, within CSW01_04620at 961.856 kb on + strand, within CSW01_04620at 961.864 kb on - strand, within CSW01_04620at 961.864 kb on - strand, within CSW01_04620at 961.866 kb on + strand, within CSW01_04620at 961.866 kb on + strand, within CSW01_04620at 961.866 kb on + strand, within CSW01_04620at 961.869 kb on - strand, within CSW01_04620at 961.874 kb on - strand, within CSW01_04620at 961.874 kb on - strand, within CSW01_04620at 961.874 kb on - strand, within CSW01_04620at 961.887 kb on - strand, within CSW01_04620at 961.897 kb on + strand, within CSW01_04620at 961.959 kb on + strand, within CSW01_04620at 961.959 kb on + strand, within CSW01_04620at 961.975 kb on - strand, within CSW01_04620at 961.991 kb on - strand, within CSW01_04620at 962.002 kb on + strand, within CSW01_04620at 962.017 kb on + strand, within CSW01_04620at 962.026 kb on + strand, within CSW01_04620at 962.034 kb on - strand, within CSW01_04620at 962.041 kb on + strand, within CSW01_04620at 962.084 kb on - strand, within CSW01_04620at 962.104 kb on - strand, within CSW01_04620at 962.186 kb on + strand, within CSW01_04620at 962.186 kb on + strand, within CSW01_04620at 962.194 kb on - strand, within CSW01_04620at 962.194 kb on - strand, within CSW01_04620at 962.205 kb on - strand, within CSW01_04620at 962.256 kb on - strand, within CSW01_04620at 962.272 kb on + strand, within CSW01_04620at 962.291 kb on - strand, within CSW01_04620at 962.310 kb on - strandat 962.334 kb on + strandat 962.334 kb on + strandat 962.334 kb on + strandat 962.334 kb on + strandat 962.342 kb on - strandat 962.342 kb on - strandat 962.342 kb on - strandat 962.349 kb on + strandat 962.442 kb on - strandat 962.488 kb on + strand, within CSW01_04625at 962.494 kb on + strand, within CSW01_04625at 962.496 kb on - strand, within CSW01_04625

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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958,265 - CSW01_04610 0.44 +0.3
958,289 + CSW01_04610 0.45 +1.1
958,289 + CSW01_04610 0.45 -0.5
958,297 - CSW01_04610 0.46 -1.1
958,307 - CSW01_04610 0.46 -0.3
958,422 - CSW01_04610 0.54 +0.6
958,423 + CSW01_04610 0.54 -0.0
958,466 + CSW01_04610 0.56 +0.0
958,474 - CSW01_04610 0.57 -0.0
958,474 - CSW01_04610 0.57 +1.3
958,487 + CSW01_04610 0.58 -0.8
958,487 + CSW01_04610 0.58 +1.0
958,487 + CSW01_04610 0.58 +0.3
958,487 + CSW01_04610 0.58 -0.6
958,487 + CSW01_04610 0.58 +0.5
958,488 + CSW01_04610 0.58 +0.0
958,495 - CSW01_04610 0.58 +0.0
958,495 - CSW01_04610 0.58 -0.3
958,495 - CSW01_04610 0.58 +0.1
958,495 - CSW01_04610 0.58 -0.5
958,495 - CSW01_04610 0.58 -0.4
958,641 - CSW01_04610 0.67 +0.6
958,805 + CSW01_04610 0.78 +0.9
958,818 + CSW01_04610 0.79 -3.4
959,059 + +1.6
959,116 + -0.3
959,140 + +0.5
959,176 - +0.7
959,259 - +0.1
959,302 - +1.2
959,310 + +0.8
959,310 + +0.1
959,318 - -0.2
959,398 + +1.2
959,425 - +1.9
959,428 + +0.2
959,435 + +0.6
959,435 + +0.1
959,438 - -0.5
959,442 - +0.5
959,443 - +0.1
959,443 - +0.6
959,443 - +2.0
959,447 + +0.6
959,502 + CSW01_04615 0.11 +0.6
959,510 - CSW01_04615 0.11 -0.0
959,510 - CSW01_04615 0.11 +0.4
959,510 - CSW01_04615 0.11 +0.3
959,767 + CSW01_04615 0.23 -0.2
959,780 + CSW01_04615 0.23 +0.3
959,812 + CSW01_04615 0.25 -0.2
959,820 - CSW01_04615 0.25 -0.3
959,850 - CSW01_04615 0.26 +0.5
959,862 + CSW01_04615 0.27 +1.1
959,865 - CSW01_04615 0.27 -0.5
959,932 + CSW01_04615 0.30 +0.0
960,008 - CSW01_04615 0.33 +1.2
960,039 - CSW01_04615 0.35 +0.1
960,039 - CSW01_04615 0.35 +0.4
960,039 - CSW01_04615 0.35 +0.4
960,047 + CSW01_04615 0.35 -0.7
960,255 - CSW01_04615 0.44 +1.0
960,300 - CSW01_04615 0.46 -0.8
960,321 + CSW01_04615 0.47 +1.4
960,387 + CSW01_04615 0.50 -2.9
960,388 - CSW01_04615 0.50 -0.1
960,398 - CSW01_04615 0.51 -1.9
960,438 + CSW01_04615 0.52 +2.5
960,443 - CSW01_04615 0.53 -0.2
960,456 - CSW01_04615 0.53 -1.0
960,458 + CSW01_04615 0.53 +0.0
960,458 + CSW01_04615 0.53 -0.7
960,467 - CSW01_04615 0.54 +0.6
960,467 - CSW01_04615 0.54 -0.7
960,477 - CSW01_04615 0.54 +0.1
960,501 - CSW01_04615 0.55 -0.2
960,599 - CSW01_04615 0.59 +0.3
960,696 + CSW01_04615 0.64 -1.5
960,719 + CSW01_04615 0.65 +0.2
960,719 + CSW01_04615 0.65 -1.8
960,719 + CSW01_04615 0.65 -1.0
960,719 + CSW01_04615 0.65 -2.0
960,727 - CSW01_04615 0.65 +0.2
960,727 - CSW01_04615 0.65 -0.3
960,727 - CSW01_04615 0.65 -1.0
960,767 - CSW01_04615 0.67 -2.0
960,767 - CSW01_04615 0.67 -0.1
960,781 + CSW01_04615 0.67 -3.6
960,791 + CSW01_04615 0.68 -0.2
960,847 - CSW01_04615 0.70 -0.3
960,855 - CSW01_04615 0.71 +0.8
960,875 + CSW01_04615 0.72 +0.9
960,876 - CSW01_04615 0.72 +1.3
960,878 - CSW01_04615 0.72 +0.0
960,927 + CSW01_04615 0.74 -0.2
960,927 + CSW01_04615 0.74 +0.7
960,935 - CSW01_04615 0.74 +0.4
960,993 - CSW01_04615 0.77 +1.0
961,000 + CSW01_04615 0.77 -0.7
961,027 - CSW01_04615 0.78 +1.8
961,050 + CSW01_04615 0.79 +0.3
961,080 - CSW01_04615 0.81 +0.2
961,136 - CSW01_04615 0.83 -0.0
961,144 - CSW01_04615 0.84 -0.9
961,186 - CSW01_04615 0.85 +1.8
961,360 + +0.8
961,360 + -1.1
961,360 + +0.5
961,360 + -0.1
961,368 - -0.7
961,368 - +0.7
961,368 - -0.0
961,405 - -0.2
961,430 + +0.1
961,437 + +0.8
961,445 - +0.5
961,445 - -0.2
961,522 + -2.1
961,524 - +0.2
961,566 - -0.3
961,589 + -1.0
961,597 + -0.6
961,597 + +0.7
961,605 - +1.0
961,634 + CSW01_04620 0.12 +3.0
961,634 + CSW01_04620 0.12 -0.5
961,634 + CSW01_04620 0.12 -0.4
961,634 + CSW01_04620 0.12 -0.7
961,647 + CSW01_04620 0.14 -0.7
961,693 - CSW01_04620 0.19 +0.1
961,717 + CSW01_04620 0.22 -1.0
961,727 + CSW01_04620 0.23 +1.0
961,727 + CSW01_04620 0.23 -2.3
961,735 + CSW01_04620 0.24 -0.1
961,735 - CSW01_04620 0.24 +1.5
961,735 - CSW01_04620 0.24 -0.3
961,756 - CSW01_04620 0.27 -0.2
961,783 - CSW01_04620 0.30 +0.9
961,842 + CSW01_04620 0.37 -0.9
961,845 - CSW01_04620 0.37 -0.5
961,854 + CSW01_04620 0.38 +0.2
961,856 + CSW01_04620 0.38 +0.9
961,856 + CSW01_04620 0.38 -2.5
961,856 + CSW01_04620 0.38 +0.2
961,856 + CSW01_04620 0.38 +1.7
961,856 + CSW01_04620 0.38 -2.9
961,864 - CSW01_04620 0.39 -1.1
961,864 - CSW01_04620 0.39 +1.8
961,866 + CSW01_04620 0.40 +1.0
961,866 + CSW01_04620 0.40 -0.5
961,866 + CSW01_04620 0.40 -0.9
961,869 - CSW01_04620 0.40 +0.2
961,874 - CSW01_04620 0.41 -0.5
961,874 - CSW01_04620 0.41 -2.8
961,874 - CSW01_04620 0.41 -1.1
961,887 - CSW01_04620 0.42 -2.1
961,897 + CSW01_04620 0.43 -1.9
961,959 + CSW01_04620 0.51 -1.4
961,959 + CSW01_04620 0.51 -0.6
961,975 - CSW01_04620 0.52 -0.5
961,991 - CSW01_04620 0.54 +0.1
962,002 + CSW01_04620 0.56 -0.5
962,017 + CSW01_04620 0.57 -1.2
962,026 + CSW01_04620 0.59 -1.0
962,034 - CSW01_04620 0.59 -1.1
962,041 + CSW01_04620 0.60 -1.3
962,084 - CSW01_04620 0.65 -1.1
962,104 - CSW01_04620 0.68 +1.5
962,186 + CSW01_04620 0.77 -0.1
962,186 + CSW01_04620 0.77 +0.9
962,194 - CSW01_04620 0.78 -0.9
962,194 - CSW01_04620 0.78 -2.8
962,205 - CSW01_04620 0.80 -0.2
962,256 - CSW01_04620 0.86 +0.8
962,272 + CSW01_04620 0.88 -1.6
962,291 - CSW01_04620 0.90 +2.0
962,310 - -0.2
962,334 + +0.7
962,334 + +1.1
962,334 + +0.7
962,334 + -2.5
962,342 - +1.2
962,342 - +1.7
962,342 - +0.8
962,349 + +0.8
962,442 - +0.3
962,488 + CSW01_04625 0.11 +0.0
962,494 + CSW01_04625 0.12 +1.9
962,496 - CSW01_04625 0.12 -0.3

Or see this region's nucleotide sequence