Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03955 and CSW01_03960 are separated by 192 nucleotides CSW01_03960 and CSW01_03965 are separated by 20 nucleotides
CSW01_03955: CSW01_03955 - outer membrane protein assembly factor BamB, at 812,923 to 814,083
_03955
CSW01_03960: CSW01_03960 - ribosome biogenesis GTPase Der, at 814,276 to 815,760
_03960
CSW01_03965: CSW01_03965 - alanyl-tRNA editing protein, at 815,781 to 816,698
_03965
Position (kb) 814
815
816 Strain fitness (log2 ratio) -2
-1
0
1
2 at 815.769 kb on + strand at 815.936 kb on - strand, within CSW01_03965 at 815.981 kb on - strand, within CSW01_03965 at 815.995 kb on + strand, within CSW01_03965 at 816.002 kb on - strand, within CSW01_03965 at 816.002 kb on - strand, within CSW01_03965 at 816.003 kb on - strand, within CSW01_03965 at 816.050 kb on - strand, within CSW01_03965 at 816.132 kb on + strand, within CSW01_03965 at 816.240 kb on - strand, within CSW01_03965 at 816.274 kb on + strand, within CSW01_03965 at 816.294 kb on - strand, within CSW01_03965 at 816.299 kb on + strand, within CSW01_03965 at 816.387 kb on - strand, within CSW01_03965 at 816.472 kb on + strand, within CSW01_03965 at 816.477 kb on + strand, within CSW01_03965 at 816.477 kb on + strand, within CSW01_03965 at 816.477 kb on + strand, within CSW01_03965 at 816.477 kb on + strand, within CSW01_03965 at 816.485 kb on - strand, within CSW01_03965 at 816.485 kb on - strand, within CSW01_03965 at 816.510 kb on + strand, within CSW01_03965 at 816.511 kb on + strand, within CSW01_03965 at 816.518 kb on - strand, within CSW01_03965 at 816.593 kb on + strand, within CSW01_03965 at 816.601 kb on - strand, within CSW01_03965
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B remove 815,769 + -0.6 815,936 - CSW01_03965 0.17 +0.3 815,981 - CSW01_03965 0.22 +0.2 815,995 + CSW01_03965 0.23 +0.3 816,002 - CSW01_03965 0.24 +0.3 816,002 - CSW01_03965 0.24 +0.4 816,003 - CSW01_03965 0.24 +1.0 816,050 - CSW01_03965 0.29 -0.9 816,132 + CSW01_03965 0.38 +0.3 816,240 - CSW01_03965 0.50 +0.1 816,274 + CSW01_03965 0.54 -0.6 816,294 - CSW01_03965 0.56 -0.5 816,299 + CSW01_03965 0.56 +1.7 816,387 - CSW01_03965 0.66 +1.1 816,472 + CSW01_03965 0.75 -0.1 816,477 + CSW01_03965 0.76 +2.3 816,477 + CSW01_03965 0.76 +0.3 816,477 + CSW01_03965 0.76 +1.5 816,477 + CSW01_03965 0.76 -2.0 816,485 - CSW01_03965 0.77 -0.1 816,485 - CSW01_03965 0.77 -0.5 816,510 + CSW01_03965 0.79 +0.9 816,511 + CSW01_03965 0.80 +0.5 816,518 - CSW01_03965 0.80 +0.2 816,593 + CSW01_03965 0.88 +0.1 816,601 - CSW01_03965 0.89 -0.8
Or see this region's nucleotide sequence