Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02945

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02925 and CSW01_02930 are separated by 56 nucleotidesCSW01_02930 and CSW01_02935 are separated by 71 nucleotidesCSW01_02935 and CSW01_02940 are separated by 366 nucleotidesCSW01_02940 and CSW01_02945 are separated by 28 nucleotidesCSW01_02945 and CSW01_02950 are separated by 9 nucleotides CSW01_02925: CSW01_02925 - tRNA-Arg, at 580,374 to 580,450 _02925 CSW01_02930: CSW01_02930 - tRNA-Arg, at 580,507 to 580,583 _02930 CSW01_02935: CSW01_02935 - tRNA-Arg, at 580,655 to 580,731 _02935 CSW01_02940: CSW01_02940 - oxaloacetate decarboxylase subunit gamma, at 581,098 to 581,358 _02940 CSW01_02945: CSW01_02945 - oxaloacetate decarboxylase subunit alpha, at 581,387 to 583,180 _02945 CSW01_02950: CSW01_02950 - sodium ion-translocating decarboxylase subunit beta, at 583,190 to 584,320 _02950 Position (kb) 581 582 583 584Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 580.606 kb on + strandat 580.614 kb on - strandat 580.791 kb on - strandat 580.978 kb on - strandat 581.199 kb on + strand, within CSW01_02940at 581.266 kb on - strand, within CSW01_02940at 581.285 kb on + strand, within CSW01_02940at 581.326 kb on + strand, within CSW01_02940at 581.331 kb on + strand, within CSW01_02940at 581.339 kb on - strandat 581.389 kb on - strandat 581.389 kb on - strandat 581.394 kb on + strandat 581.402 kb on - strandat 581.403 kb on - strandat 581.416 kb on - strandat 581.596 kb on - strand, within CSW01_02945at 581.726 kb on + strand, within CSW01_02945at 581.824 kb on + strand, within CSW01_02945at 581.843 kb on + strand, within CSW01_02945at 581.846 kb on - strand, within CSW01_02945at 581.920 kb on + strand, within CSW01_02945at 581.930 kb on - strand, within CSW01_02945at 581.932 kb on + strand, within CSW01_02945at 581.932 kb on + strand, within CSW01_02945at 581.932 kb on + strand, within CSW01_02945at 581.940 kb on - strand, within CSW01_02945at 581.940 kb on - strand, within CSW01_02945at 581.940 kb on - strand, within CSW01_02945at 581.940 kb on - strand, within CSW01_02945at 581.940 kb on - strand, within CSW01_02945at 581.977 kb on + strand, within CSW01_02945at 581.977 kb on + strand, within CSW01_02945at 581.977 kb on + strand, within CSW01_02945at 581.985 kb on - strand, within CSW01_02945at 582.033 kb on - strand, within CSW01_02945at 582.140 kb on - strand, within CSW01_02945at 582.145 kb on + strand, within CSW01_02945at 582.204 kb on + strand, within CSW01_02945at 582.205 kb on - strand, within CSW01_02945at 582.232 kb on + strand, within CSW01_02945at 582.252 kb on + strand, within CSW01_02945at 582.252 kb on - strand, within CSW01_02945at 582.267 kb on + strand, within CSW01_02945at 582.331 kb on - strand, within CSW01_02945at 582.340 kb on + strand, within CSW01_02945at 582.391 kb on - strand, within CSW01_02945at 582.408 kb on + strand, within CSW01_02945at 582.408 kb on + strand, within CSW01_02945at 582.448 kb on - strand, within CSW01_02945at 582.466 kb on + strand, within CSW01_02945at 582.506 kb on + strand, within CSW01_02945at 582.506 kb on + strand, within CSW01_02945at 582.514 kb on - strand, within CSW01_02945at 582.514 kb on - strand, within CSW01_02945at 582.519 kb on - strand, within CSW01_02945at 582.521 kb on + strand, within CSW01_02945at 582.540 kb on - strand, within CSW01_02945at 582.620 kb on - strand, within CSW01_02945at 582.635 kb on - strand, within CSW01_02945at 582.692 kb on + strand, within CSW01_02945at 582.692 kb on + strand, within CSW01_02945at 582.699 kb on - strand, within CSW01_02945at 582.700 kb on - strand, within CSW01_02945at 582.700 kb on - strand, within CSW01_02945at 582.750 kb on + strand, within CSW01_02945at 582.750 kb on + strand, within CSW01_02945at 582.750 kb on + strand, within CSW01_02945at 582.750 kb on + strand, within CSW01_02945at 582.758 kb on - strand, within CSW01_02945at 582.760 kb on + strand, within CSW01_02945at 582.770 kb on + strand, within CSW01_02945at 582.799 kb on - strand, within CSW01_02945at 582.814 kb on + strand, within CSW01_02945at 582.830 kb on + strand, within CSW01_02945at 582.846 kb on + strand, within CSW01_02945at 582.846 kb on + strand, within CSW01_02945at 582.854 kb on - strand, within CSW01_02945at 582.854 kb on - strand, within CSW01_02945at 582.861 kb on + strand, within CSW01_02945at 582.866 kb on + strand, within CSW01_02945at 582.873 kb on + strand, within CSW01_02945at 582.893 kb on + strand, within CSW01_02945at 582.896 kb on + strand, within CSW01_02945at 582.896 kb on + strand, within CSW01_02945at 582.896 kb on + strand, within CSW01_02945at 582.916 kb on - strand, within CSW01_02945at 582.916 kb on - strand, within CSW01_02945at 582.959 kb on + strand, within CSW01_02945at 582.966 kb on - strand, within CSW01_02945at 583.090 kb on - strandat 583.107 kb on - strandat 583.163 kb on + strandat 583.168 kb on - strandat 583.171 kb on - strandat 583.171 kb on - strandat 583.251 kb on - strandat 583.277 kb on - strandat 583.277 kb on - strandat 583.385 kb on + strand, within CSW01_02950at 583.393 kb on + strand, within CSW01_02950at 583.393 kb on + strand, within CSW01_02950at 583.401 kb on - strand, within CSW01_02950at 583.406 kb on - strand, within CSW01_02950at 583.413 kb on + strand, within CSW01_02950at 583.508 kb on - strand, within CSW01_02950at 583.574 kb on - strand, within CSW01_02950at 583.574 kb on - strand, within CSW01_02950at 583.588 kb on + strand, within CSW01_02950at 583.683 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.700 kb on + strand, within CSW01_02950at 583.707 kb on + strand, within CSW01_02950at 583.708 kb on - strand, within CSW01_02950at 583.751 kb on + strand, within CSW01_02950at 583.800 kb on - strand, within CSW01_02950at 583.869 kb on + strand, within CSW01_02950at 583.877 kb on + strand, within CSW01_02950at 583.885 kb on - strand, within CSW01_02950at 583.996 kb on - strand, within CSW01_02950at 584.022 kb on - strand, within CSW01_02950at 584.077 kb on - strand, within CSW01_02950at 584.157 kb on - strand, within CSW01_02950at 584.176 kb on + strand, within CSW01_02950

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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580,606 + +0.4
580,614 - -0.1
580,791 - +0.1
580,978 - +0.2
581,199 + CSW01_02940 0.39 +0.5
581,266 - CSW01_02940 0.64 +0.4
581,285 + CSW01_02940 0.72 -0.1
581,326 + CSW01_02940 0.87 -0.2
581,331 + CSW01_02940 0.89 -0.7
581,339 - +0.2
581,389 - +0.8
581,389 - -0.7
581,394 + -0.3
581,402 - +0.3
581,403 - +0.3
581,416 - +0.2
581,596 - CSW01_02945 0.12 -0.4
581,726 + CSW01_02945 0.19 -0.3
581,824 + CSW01_02945 0.24 -1.2
581,843 + CSW01_02945 0.25 +0.1
581,846 - CSW01_02945 0.26 +0.0
581,920 + CSW01_02945 0.30 -1.9
581,930 - CSW01_02945 0.30 -0.0
581,932 + CSW01_02945 0.30 -1.3
581,932 + CSW01_02945 0.30 -2.0
581,932 + CSW01_02945 0.30 -0.1
581,940 - CSW01_02945 0.31 +1.7
581,940 - CSW01_02945 0.31 -3.2
581,940 - CSW01_02945 0.31 -1.5
581,940 - CSW01_02945 0.31 +1.0
581,940 - CSW01_02945 0.31 -0.8
581,977 + CSW01_02945 0.33 -0.3
581,977 + CSW01_02945 0.33 +0.8
581,977 + CSW01_02945 0.33 -1.9
581,985 - CSW01_02945 0.33 -0.2
582,033 - CSW01_02945 0.36 -0.1
582,140 - CSW01_02945 0.42 +0.3
582,145 + CSW01_02945 0.42 +0.7
582,204 + CSW01_02945 0.46 -0.4
582,205 - CSW01_02945 0.46 +1.0
582,232 + CSW01_02945 0.47 -0.5
582,252 + CSW01_02945 0.48 +0.1
582,252 - CSW01_02945 0.48 +0.3
582,267 + CSW01_02945 0.49 -0.1
582,331 - CSW01_02945 0.53 +0.3
582,340 + CSW01_02945 0.53 -0.3
582,391 - CSW01_02945 0.56 +0.9
582,408 + CSW01_02945 0.57 -0.4
582,408 + CSW01_02945 0.57 -0.6
582,448 - CSW01_02945 0.59 +2.0
582,466 + CSW01_02945 0.60 -0.8
582,506 + CSW01_02945 0.62 +0.2
582,506 + CSW01_02945 0.62 -0.7
582,514 - CSW01_02945 0.63 +0.2
582,514 - CSW01_02945 0.63 -1.2
582,519 - CSW01_02945 0.63 +0.0
582,521 + CSW01_02945 0.63 +0.9
582,540 - CSW01_02945 0.64 -0.2
582,620 - CSW01_02945 0.69 -1.8
582,635 - CSW01_02945 0.70 -0.2
582,692 + CSW01_02945 0.73 -1.2
582,692 + CSW01_02945 0.73 +0.2
582,699 - CSW01_02945 0.73 -0.0
582,700 - CSW01_02945 0.73 -0.0
582,700 - CSW01_02945 0.73 +0.3
582,750 + CSW01_02945 0.76 -0.6
582,750 + CSW01_02945 0.76 -0.1
582,750 + CSW01_02945 0.76 -0.9
582,750 + CSW01_02945 0.76 -0.6
582,758 - CSW01_02945 0.76 +0.7
582,760 + CSW01_02945 0.77 -0.5
582,770 + CSW01_02945 0.77 +0.2
582,799 - CSW01_02945 0.79 +0.5
582,814 + CSW01_02945 0.80 -0.2
582,830 + CSW01_02945 0.80 -0.4
582,846 + CSW01_02945 0.81 -0.2
582,846 + CSW01_02945 0.81 +0.8
582,854 - CSW01_02945 0.82 -0.8
582,854 - CSW01_02945 0.82 -1.6
582,861 + CSW01_02945 0.82 +0.1
582,866 + CSW01_02945 0.82 -0.9
582,873 + CSW01_02945 0.83 +0.6
582,893 + CSW01_02945 0.84 -0.5
582,896 + CSW01_02945 0.84 -0.5
582,896 + CSW01_02945 0.84 -0.6
582,896 + CSW01_02945 0.84 +0.1
582,916 - CSW01_02945 0.85 -1.1
582,916 - CSW01_02945 0.85 -0.2
582,959 + CSW01_02945 0.88 -1.3
582,966 - CSW01_02945 0.88 +2.1
583,090 - -0.4
583,107 - +0.2
583,163 + -1.3
583,168 - +0.3
583,171 - -0.2
583,171 - +0.3
583,251 - +0.0
583,277 - -1.0
583,277 - +0.3
583,385 + CSW01_02950 0.17 -0.2
583,393 + CSW01_02950 0.18 +0.6
583,393 + CSW01_02950 0.18 -0.4
583,401 - CSW01_02950 0.19 +0.0
583,406 - CSW01_02950 0.19 -2.5
583,413 + CSW01_02950 0.20 +1.0
583,508 - CSW01_02950 0.28 +1.8
583,574 - CSW01_02950 0.34 +0.4
583,574 - CSW01_02950 0.34 +0.4
583,588 + CSW01_02950 0.35 -1.6
583,683 + CSW01_02950 0.44 +0.7
583,700 + CSW01_02950 0.45 -0.2
583,700 + CSW01_02950 0.45 -1.2
583,700 + CSW01_02950 0.45 +0.3
583,700 + CSW01_02950 0.45 +0.3
583,707 + CSW01_02950 0.46 +0.0
583,708 - CSW01_02950 0.46 +0.8
583,751 + CSW01_02950 0.50 -0.3
583,800 - CSW01_02950 0.54 +0.3
583,869 + CSW01_02950 0.60 +1.6
583,877 + CSW01_02950 0.61 -1.1
583,885 - CSW01_02950 0.61 -0.9
583,996 - CSW01_02950 0.71 -0.1
584,022 - CSW01_02950 0.74 -0.8
584,077 - CSW01_02950 0.78 -0.2
584,157 - CSW01_02950 0.85 -0.1
584,176 + CSW01_02950 0.87 -2.8

Or see this region's nucleotide sequence