Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02565 and CSW01_02570 are separated by 332 nucleotides CSW01_02570 and CSW01_02575 are separated by 71 nucleotides
CSW01_02565: CSW01_02565 - oxidative stress defense protein, at 512,220 to 512,936
_02565
CSW01_02570: CSW01_02570 - hypothetical protein, at 513,269 to 513,400
_02570
CSW01_02575: CSW01_02575 - pyruvate kinase PykF, at 513,472 to 514,884
_02575
Position (kb) 513
514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 512.363 kb on - strand, within CSW01_02565 at 512.429 kb on + strand, within CSW01_02565 at 512.429 kb on + strand, within CSW01_02565 at 512.429 kb on + strand, within CSW01_02565 at 512.525 kb on + strand, within CSW01_02565 at 512.548 kb on - strand, within CSW01_02565 at 512.590 kb on + strand, within CSW01_02565 at 512.654 kb on + strand, within CSW01_02565 at 512.735 kb on + strand, within CSW01_02565 at 512.735 kb on + strand, within CSW01_02565 at 512.735 kb on + strand, within CSW01_02565 at 512.743 kb on - strand, within CSW01_02565 at 512.743 kb on - strand, within CSW01_02565 at 512.743 kb on - strand, within CSW01_02565 at 512.755 kb on - strand, within CSW01_02565 at 512.761 kb on - strand, within CSW01_02565 at 512.812 kb on + strand, within CSW01_02565 at 512.820 kb on - strand, within CSW01_02565 at 512.820 kb on - strand, within CSW01_02565 at 512.820 kb on - strand, within CSW01_02565 at 512.820 kb on - strand, within CSW01_02565 at 512.820 kb on - strand, within CSW01_02565 at 512.820 kb on - strand, within CSW01_02565 at 512.872 kb on + strand at 512.932 kb on - strand at 512.964 kb on - strand at 513.237 kb on + strand at 513.286 kb on + strand, within CSW01_02570 at 513.313 kb on + strand, within CSW01_02570 at 513.321 kb on + strand, within CSW01_02570 at 513.322 kb on - strand, within CSW01_02570 at 513.364 kb on + strand, within CSW01_02570 at 513.364 kb on + strand, within CSW01_02570 at 513.364 kb on + strand, within CSW01_02570 at 513.364 kb on + strand, within CSW01_02570 at 513.369 kb on + strand, within CSW01_02570 at 513.372 kb on - strand, within CSW01_02570 at 513.447 kb on + strand at 513.447 kb on + strand at 513.532 kb on - strand at 513.707 kb on + strand, within CSW01_02575 at 513.803 kb on - strand, within CSW01_02575
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B remove 512,363 - CSW01_02565 0.20 +2.2 512,429 + CSW01_02565 0.29 +0.7 512,429 + CSW01_02565 0.29 -0.3 512,429 + CSW01_02565 0.29 -1.0 512,525 + CSW01_02565 0.43 +0.6 512,548 - CSW01_02565 0.46 -0.4 512,590 + CSW01_02565 0.52 +1.1 512,654 + CSW01_02565 0.61 -3.4 512,735 + CSW01_02565 0.72 +0.4 512,735 + CSW01_02565 0.72 -1.0 512,735 + CSW01_02565 0.72 +2.4 512,743 - CSW01_02565 0.73 -1.4 512,743 - CSW01_02565 0.73 +0.0 512,743 - CSW01_02565 0.73 +0.2 512,755 - CSW01_02565 0.75 +1.5 512,761 - CSW01_02565 0.75 +2.5 512,812 + CSW01_02565 0.83 -0.3 512,820 - CSW01_02565 0.84 +0.4 512,820 - CSW01_02565 0.84 +1.7 512,820 - CSW01_02565 0.84 -3.1 512,820 - CSW01_02565 0.84 +0.6 512,820 - CSW01_02565 0.84 -0.3 512,820 - CSW01_02565 0.84 +1.2 512,872 + +0.2 512,932 - -0.8 512,964 - -1.1 513,237 + -0.8 513,286 + CSW01_02570 0.13 -0.0 513,313 + CSW01_02570 0.33 +1.0 513,321 + CSW01_02570 0.39 -1.3 513,322 - CSW01_02570 0.40 -1.2 513,364 + CSW01_02570 0.72 +0.4 513,364 + CSW01_02570 0.72 +0.1 513,364 + CSW01_02570 0.72 -0.2 513,364 + CSW01_02570 0.72 +0.7 513,369 + CSW01_02570 0.76 -0.6 513,372 - CSW01_02570 0.78 -0.1 513,447 + +0.9 513,447 + +0.4 513,532 - +0.4 513,707 + CSW01_02575 0.17 -1.2 513,803 - CSW01_02575 0.23 +0.4
Or see this region's nucleotide sequence