Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02140

Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02135 and CSW01_02140 are separated by 8 nucleotidesCSW01_02140 and CSW01_02145 are separated by 2 nucleotidesCSW01_02145 and CSW01_02150 are separated by 80 nucleotides CSW01_02135: CSW01_02135 - MSHA biogenesis protein MshE, at 430,115 to 431,842 _02135 CSW01_02140: CSW01_02140 - type II secretion system F family protein, at 431,851 to 433,074 _02140 CSW01_02145: CSW01_02145 - MSHA biogenesis protein MshF, at 433,077 to 433,529 _02145 CSW01_02150: CSW01_02150 - MSHA biogenesis protein MshB, at 433,610 to 434,164 _02150 Position (kb) 431 432 433 434Strain fitness (log2 ratio) -2 -1 0 1 2at 430.909 kb on - strand, within CSW01_02135at 430.935 kb on - strand, within CSW01_02135at 430.945 kb on - strand, within CSW01_02135at 430.955 kb on - strand, within CSW01_02135at 430.963 kb on - strand, within CSW01_02135at 430.972 kb on + strand, within CSW01_02135at 431.030 kb on - strand, within CSW01_02135at 431.064 kb on + strand, within CSW01_02135at 431.104 kb on - strand, within CSW01_02135at 431.116 kb on - strand, within CSW01_02135at 431.341 kb on - strand, within CSW01_02135at 431.341 kb on - strand, within CSW01_02135at 431.341 kb on - strand, within CSW01_02135at 431.351 kb on + strand, within CSW01_02135at 431.358 kb on + strand, within CSW01_02135at 431.359 kb on - strand, within CSW01_02135at 431.361 kb on - strand, within CSW01_02135at 431.361 kb on - strand, within CSW01_02135at 431.368 kb on - strand, within CSW01_02135at 431.370 kb on + strand, within CSW01_02135at 431.444 kb on - strand, within CSW01_02135at 431.461 kb on + strand, within CSW01_02135at 431.481 kb on + strand, within CSW01_02135at 431.489 kb on - strand, within CSW01_02135at 431.619 kb on + strand, within CSW01_02135at 431.643 kb on + strand, within CSW01_02135at 431.695 kb on + strandat 431.710 kb on + strandat 431.710 kb on + strandat 431.710 kb on + strandat 431.710 kb on + strandat 431.710 kb on + strandat 431.718 kb on - strandat 431.718 kb on - strandat 431.718 kb on - strandat 431.718 kb on - strandat 431.718 kb on - strandat 431.737 kb on + strandat 431.765 kb on + strandat 431.797 kb on + strandat 431.797 kb on + strandat 431.805 kb on - strandat 431.805 kb on - strandat 431.805 kb on - strandat 431.819 kb on - strandat 431.843 kb on + strandat 431.850 kb on - strandat 431.874 kb on + strandat 431.882 kb on - strandat 431.882 kb on - strandat 431.896 kb on + strandat 431.902 kb on + strandat 431.905 kb on - strandat 431.913 kb on + strandat 431.954 kb on - strandat 432.030 kb on + strand, within CSW01_02140at 432.030 kb on - strand, within CSW01_02140at 432.100 kb on - strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.173 kb on - strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.187 kb on - strand, within CSW01_02140at 432.187 kb on - strand, within CSW01_02140at 432.187 kb on - strand, within CSW01_02140at 432.215 kb on - strand, within CSW01_02140at 432.328 kb on + strand, within CSW01_02140at 432.420 kb on + strand, within CSW01_02140at 432.428 kb on - strand, within CSW01_02140at 432.469 kb on + strand, within CSW01_02140at 432.469 kb on + strand, within CSW01_02140at 432.469 kb on + strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.530 kb on - strand, within CSW01_02140at 432.530 kb on - strand, within CSW01_02140at 432.530 kb on - strand, within CSW01_02140at 432.553 kb on + strand, within CSW01_02140at 432.573 kb on + strand, within CSW01_02140at 432.579 kb on + strand, within CSW01_02140at 432.587 kb on - strand, within CSW01_02140at 432.637 kb on + strand, within CSW01_02140at 432.858 kb on - strand, within CSW01_02140at 432.859 kb on + strand, within CSW01_02140at 432.959 kb on + strandat 433.063 kb on + strandat 433.071 kb on - strandat 433.087 kb on + strandat 433.174 kb on + strand, within CSW01_02145at 433.177 kb on - strand, within CSW01_02145at 433.177 kb on - strand, within CSW01_02145at 433.179 kb on + strand, within CSW01_02145at 433.179 kb on + strand, within CSW01_02145at 433.187 kb on - strand, within CSW01_02145at 433.187 kb on - strand, within CSW01_02145at 433.191 kb on + strand, within CSW01_02145at 433.199 kb on - strand, within CSW01_02145at 433.234 kb on - strand, within CSW01_02145at 433.234 kb on - strand, within CSW01_02145at 433.264 kb on + strand, within CSW01_02145at 433.264 kb on + strand, within CSW01_02145at 433.282 kb on - strand, within CSW01_02145at 433.367 kb on + strand, within CSW01_02145at 433.372 kb on + strand, within CSW01_02145at 433.386 kb on + strand, within CSW01_02145at 433.386 kb on + strand, within CSW01_02145at 433.394 kb on - strand, within CSW01_02145at 433.394 kb on - strand, within CSW01_02145at 433.394 kb on - strand, within CSW01_02145at 433.413 kb on + strand, within CSW01_02145at 433.456 kb on + strand, within CSW01_02145at 433.456 kb on + strand, within CSW01_02145at 433.456 kb on + strand, within CSW01_02145at 433.464 kb on + strand, within CSW01_02145at 433.549 kb on + strandat 433.734 kb on + strand, within CSW01_02150at 433.863 kb on + strand, within CSW01_02150at 433.951 kb on - strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.952 kb on + strand, within CSW01_02150at 433.960 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 433.965 kb on - strand, within CSW01_02150at 434.067 kb on + strand, within CSW01_02150

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
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430,909 - CSW01_02135 0.46 +0.7
430,935 - CSW01_02135 0.47 +0.3
430,945 - CSW01_02135 0.48 -0.1
430,955 - CSW01_02135 0.49 +1.2
430,963 - CSW01_02135 0.49 +0.2
430,972 + CSW01_02135 0.50 +2.0
431,030 - CSW01_02135 0.53 +0.6
431,064 + CSW01_02135 0.55 +2.2
431,104 - CSW01_02135 0.57 -0.3
431,116 - CSW01_02135 0.58 +0.1
431,341 - CSW01_02135 0.71 +1.0
431,341 - CSW01_02135 0.71 -0.6
431,341 - CSW01_02135 0.71 +1.4
431,351 + CSW01_02135 0.72 +0.4
431,358 + CSW01_02135 0.72 +1.1
431,359 - CSW01_02135 0.72 +1.5
431,361 - CSW01_02135 0.72 +0.2
431,361 - CSW01_02135 0.72 -0.1
431,368 - CSW01_02135 0.73 +0.5
431,370 + CSW01_02135 0.73 +0.5
431,444 - CSW01_02135 0.77 +1.3
431,461 + CSW01_02135 0.78 +0.3
431,481 + CSW01_02135 0.79 +0.7
431,489 - CSW01_02135 0.80 +0.5
431,619 + CSW01_02135 0.87 +0.6
431,643 + CSW01_02135 0.88 +0.8
431,695 + +0.8
431,710 + +1.1
431,710 + -1.7
431,710 + -0.1
431,710 + +1.0
431,710 + +0.9
431,718 - +1.1
431,718 - +1.3
431,718 - +0.7
431,718 - +0.5
431,718 - +0.4
431,737 + -1.0
431,765 + +0.4
431,797 + -0.1
431,797 + +0.1
431,805 - +0.1
431,805 - -0.8
431,805 - +0.9
431,819 - +0.5
431,843 + -1.3
431,850 - -0.4
431,874 + +0.6
431,882 - +0.4
431,882 - +1.5
431,896 + -0.3
431,902 + +1.0
431,905 - +1.0
431,913 + +0.1
431,954 - +0.3
432,030 + CSW01_02140 0.15 +1.5
432,030 - CSW01_02140 0.15 +1.0
432,100 - CSW01_02140 0.20 +0.4
432,130 + CSW01_02140 0.23 -1.7
432,130 + CSW01_02140 0.23 +2.0
432,130 + CSW01_02140 0.23 +0.3
432,130 + CSW01_02140 0.23 +0.8
432,130 + CSW01_02140 0.23 +0.5
432,130 + CSW01_02140 0.23 +0.1
432,130 + CSW01_02140 0.23 +1.4
432,130 + CSW01_02140 0.23 +0.6
432,130 + CSW01_02140 0.23 +1.2
432,130 + CSW01_02140 0.23 +1.5
432,138 - CSW01_02140 0.23 +1.5
432,138 - CSW01_02140 0.23 +0.5
432,138 - CSW01_02140 0.23 +0.8
432,138 - CSW01_02140 0.23 +0.0
432,138 - CSW01_02140 0.23 +1.3
432,138 - CSW01_02140 0.23 +1.1
432,138 - CSW01_02140 0.23 +1.0
432,138 - CSW01_02140 0.23 +1.5
432,153 + CSW01_02140 0.25 +0.2
432,153 + CSW01_02140 0.25 +1.7
432,153 + CSW01_02140 0.25 +0.4
432,153 + CSW01_02140 0.25 +0.3
432,153 + CSW01_02140 0.25 -0.2
432,153 + CSW01_02140 0.25 +0.6
432,153 + CSW01_02140 0.25 +1.4
432,153 + CSW01_02140 0.25 +1.3
432,161 - CSW01_02140 0.25 -0.2
432,161 - CSW01_02140 0.25 +1.8
432,161 - CSW01_02140 0.25 +1.0
432,161 - CSW01_02140 0.25 +1.4
432,161 - CSW01_02140 0.25 +0.6
432,161 - CSW01_02140 0.25 +1.1
432,161 - CSW01_02140 0.25 +1.1
432,161 - CSW01_02140 0.25 +1.5
432,161 - CSW01_02140 0.25 +0.7
432,161 - CSW01_02140 0.25 +0.3
432,161 - CSW01_02140 0.25 -0.6
432,161 - CSW01_02140 0.25 +0.9
432,173 - CSW01_02140 0.26 +1.3
432,179 + CSW01_02140 0.27 +1.0
432,179 + CSW01_02140 0.27 +0.6
432,179 + CSW01_02140 0.27 +0.5
432,179 + CSW01_02140 0.27 -0.6
432,179 + CSW01_02140 0.27 +0.4
432,187 - CSW01_02140 0.27 +1.8
432,187 - CSW01_02140 0.27 +0.6
432,187 - CSW01_02140 0.27 -0.2
432,215 - CSW01_02140 0.30 -1.3
432,328 + CSW01_02140 0.39 +0.5
432,420 + CSW01_02140 0.46 +0.2
432,428 - CSW01_02140 0.47 +0.3
432,469 + CSW01_02140 0.50 +0.5
432,469 + CSW01_02140 0.50 +0.6
432,469 + CSW01_02140 0.50 +0.5
432,477 - CSW01_02140 0.51 +0.9
432,477 - CSW01_02140 0.51 +1.5
432,477 - CSW01_02140 0.51 +0.2
432,477 - CSW01_02140 0.51 +0.9
432,477 - CSW01_02140 0.51 +1.0
432,477 - CSW01_02140 0.51 +1.0
432,477 - CSW01_02140 0.51 -0.5
432,477 - CSW01_02140 0.51 +0.9
432,530 - CSW01_02140 0.55 +0.7
432,530 - CSW01_02140 0.55 +0.9
432,530 - CSW01_02140 0.55 +1.0
432,553 + CSW01_02140 0.57 +0.6
432,573 + CSW01_02140 0.59 -0.0
432,579 + CSW01_02140 0.59 +0.7
432,587 - CSW01_02140 0.60 +0.4
432,637 + CSW01_02140 0.64 +1.4
432,858 - CSW01_02140 0.82 +0.6
432,859 + CSW01_02140 0.82 +0.2
432,959 + +0.9
433,063 + +1.0
433,071 - +0.9
433,087 + +0.4
433,174 + CSW01_02145 0.21 +0.0
433,177 - CSW01_02145 0.22 -0.5
433,177 - CSW01_02145 0.22 -0.2
433,179 + CSW01_02145 0.23 +0.3
433,179 + CSW01_02145 0.23 +1.3
433,187 - CSW01_02145 0.24 +1.0
433,187 - CSW01_02145 0.24 +0.9
433,191 + CSW01_02145 0.25 +0.1
433,199 - CSW01_02145 0.27 +1.6
433,234 - CSW01_02145 0.35 +0.7
433,234 - CSW01_02145 0.35 +0.1
433,264 + CSW01_02145 0.41 -0.3
433,264 + CSW01_02145 0.41 -1.2
433,282 - CSW01_02145 0.45 +1.0
433,367 + CSW01_02145 0.64 -0.3
433,372 + CSW01_02145 0.65 -0.2
433,386 + CSW01_02145 0.68 -0.5
433,386 + CSW01_02145 0.68 -0.1
433,394 - CSW01_02145 0.70 -0.8
433,394 - CSW01_02145 0.70 +0.3
433,394 - CSW01_02145 0.70 -0.1
433,413 + CSW01_02145 0.74 -1.8
433,456 + CSW01_02145 0.84 -1.0
433,456 + CSW01_02145 0.84 -0.3
433,456 + CSW01_02145 0.84 -0.3
433,464 + CSW01_02145 0.85 -0.9
433,549 + +0.0
433,734 + CSW01_02150 0.22 -0.1
433,863 + CSW01_02150 0.46 +0.7
433,951 - CSW01_02150 0.61 +0.9
433,952 + CSW01_02150 0.62 +0.2
433,952 + CSW01_02150 0.62 +0.9
433,952 + CSW01_02150 0.62 -0.4
433,960 - CSW01_02150 0.63 +0.9
433,965 - CSW01_02150 0.64 +1.5
433,965 - CSW01_02150 0.64 +0.1
433,965 - CSW01_02150 0.64 +0.6
434,067 + CSW01_02150 0.82 +0.4

Or see this region's nucleotide sequence