Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01605 and CSW01_01610 are separated by 107 nucleotides CSW01_01610 and CSW01_01615 are separated by 25 nucleotides CSW01_01615 and CSW01_01620 are separated by 284 nucleotides CSW01_01620 and CSW01_01625 are separated by 94 nucleotides CSW01_01625 and CSW01_01630 are separated by 12 nucleotides
CSW01_01605: CSW01_01605 - 23S ribosomal RNA, at 324,926 to 327,841
_01605
CSW01_01610: CSW01_01610 - 5S ribosomal RNA, at 327,949 to 328,064
_01610
CSW01_01615: CSW01_01615 - tRNA-Asp, at 328,090 to 328,166
_01615
CSW01_01620: CSW01_01620 - phosphatidylserine synthase, at 328,451 to 329,791
_01620
CSW01_01625: CSW01_01625 - N-acetyltransferase, at 329,886 to 330,332
_01625
CSW01_01630: CSW01_01630 - UDP-N-acetylmuramate dehydrogenase, at 330,345 to 331,418
_01630
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1 at 328.372 kb on + strand at 328.392 kb on + strand at 328.400 kb on - strand at 329.811 kb on - strand at 329.916 kb on + strand at 329.935 kb on - strand, within CSW01_01625 at 329.938 kb on + strand, within CSW01_01625 at 330.024 kb on + strand, within CSW01_01625 at 330.032 kb on - strand, within CSW01_01625 at 330.055 kb on + strand, within CSW01_01625 at 330.108 kb on + strand, within CSW01_01625 at 330.108 kb on + strand, within CSW01_01625 at 330.116 kb on - strand, within CSW01_01625 at 330.116 kb on - strand, within CSW01_01625 at 330.130 kb on - strand, within CSW01_01625 at 330.175 kb on - strand, within CSW01_01625 at 330.210 kb on - strand, within CSW01_01625 at 330.246 kb on - strand, within CSW01_01625 at 330.246 kb on - strand, within CSW01_01625
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B remove 328,372 + +0.5 328,392 + -0.4 328,400 - +0.5 329,811 - +0.6 329,916 + -0.7 329,935 - CSW01_01625 0.11 +0.4 329,938 + CSW01_01625 0.12 -0.7 330,024 + CSW01_01625 0.31 -0.3 330,032 - CSW01_01625 0.33 +0.9 330,055 + CSW01_01625 0.38 -0.6 330,108 + CSW01_01625 0.50 +0.2 330,108 + CSW01_01625 0.50 -0.8 330,116 - CSW01_01625 0.51 -2.1 330,116 - CSW01_01625 0.51 -0.1 330,130 - CSW01_01625 0.55 -0.2 330,175 - CSW01_01625 0.65 +0.1 330,210 - CSW01_01625 0.72 -0.1 330,246 - CSW01_01625 0.81 +1.5 330,246 - CSW01_01625 0.81 -2.5
Or see this region's nucleotide sequence