Experiment: LB_0.5%bileacids_Anaerobic_60MIN_ZN5B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00455 and CSW01_00460 are separated by 59 nucleotides CSW01_00460 and CSW01_00465 are separated by 3 nucleotides CSW01_00465 and CSW01_00470 are separated by 88 nucleotides
CSW01_00455: CSW01_00455 - ubiquinone biosynthesis protein UbiB, at 83,075 to 84,709
_00455
CSW01_00460: CSW01_00460 - twin-arginine translocase subunit TatA, at 84,769 to 85,017
_00460
CSW01_00465: CSW01_00465 - twin-arginine translocase subunit TatB, at 85,021 to 85,422
_00465
CSW01_00470: CSW01_00470 - twin-arginine translocase subunit TatC, at 85,511 to 86,263
_00470
Position (kb) 85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 84.859 kb on + strand, within CSW01_00460 at 84.859 kb on + strand, within CSW01_00460 at 84.859 kb on + strand, within CSW01_00460 at 84.859 kb on + strand, within CSW01_00460 at 84.867 kb on - strand, within CSW01_00460 at 84.867 kb on - strand, within CSW01_00460 at 84.867 kb on - strand, within CSW01_00460 at 84.867 kb on - strand, within CSW01_00460 at 84.874 kb on + strand, within CSW01_00460 at 84.882 kb on - strand, within CSW01_00460 at 84.915 kb on - strand, within CSW01_00460 at 84.966 kb on + strand, within CSW01_00460 at 84.966 kb on + strand, within CSW01_00460 at 85.011 kb on + strand at 85.011 kb on + strand at 85.011 kb on + strand at 85.011 kb on + strand at 85.019 kb on - strand at 85.053 kb on + strand at 85.090 kb on - strand, within CSW01_00465 at 85.098 kb on - strand, within CSW01_00465 at 85.169 kb on - strand, within CSW01_00465 at 85.209 kb on + strand, within CSW01_00465 at 85.310 kb on + strand, within CSW01_00465 at 85.373 kb on + strand, within CSW01_00465 at 85.391 kb on + strand at 85.466 kb on + strand at 85.511 kb on - strand at 85.551 kb on + strand at 85.632 kb on + strand, within CSW01_00470 at 85.706 kb on + strand, within CSW01_00470 at 85.791 kb on - strand, within CSW01_00470 at 85.898 kb on - strand, within CSW01_00470 at 85.951 kb on - strand, within CSW01_00470 at 85.951 kb on - strand, within CSW01_00470 at 86.038 kb on - strand, within CSW01_00470 at 86.047 kb on + strand, within CSW01_00470 at 86.091 kb on + strand, within CSW01_00470 at 86.175 kb on - strand, within CSW01_00470 at 86.291 kb on + strand at 86.292 kb on - strand at 86.299 kb on - strand at 86.312 kb on - strand at 86.405 kb on + strand at 86.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_Anaerobic_60MIN_ZN5B remove 84,859 + CSW01_00460 0.36 -0.8 84,859 + CSW01_00460 0.36 -3.1 84,859 + CSW01_00460 0.36 +0.1 84,859 + CSW01_00460 0.36 -1.3 84,867 - CSW01_00460 0.39 -2.6 84,867 - CSW01_00460 0.39 +1.6 84,867 - CSW01_00460 0.39 -0.4 84,867 - CSW01_00460 0.39 -3.1 84,874 + CSW01_00460 0.42 +0.2 84,882 - CSW01_00460 0.45 -1.2 84,915 - CSW01_00460 0.59 -0.2 84,966 + CSW01_00460 0.79 -0.1 84,966 + CSW01_00460 0.79 -0.1 85,011 + -0.2 85,011 + +0.4 85,011 + -0.7 85,011 + +1.0 85,019 - -1.0 85,053 + +0.4 85,090 - CSW01_00465 0.17 -0.9 85,098 - CSW01_00465 0.19 -0.8 85,169 - CSW01_00465 0.37 +0.4 85,209 + CSW01_00465 0.47 -0.8 85,310 + CSW01_00465 0.72 -0.0 85,373 + CSW01_00465 0.88 -1.1 85,391 + +0.1 85,466 + -0.8 85,511 - +0.4 85,551 + -1.2 85,632 + CSW01_00470 0.16 -0.1 85,706 + CSW01_00470 0.26 +0.6 85,791 - CSW01_00470 0.37 +2.1 85,898 - CSW01_00470 0.51 -0.8 85,951 - CSW01_00470 0.58 +1.0 85,951 - CSW01_00470 0.58 -0.0 86,038 - CSW01_00470 0.70 -0.9 86,047 + CSW01_00470 0.71 +0.4 86,091 + CSW01_00470 0.77 +0.5 86,175 - CSW01_00470 0.88 -1.0 86,291 + -0.2 86,292 - +0.4 86,299 - -0.1 86,312 - -0.3 86,405 + -0.2 86,420 - +0.2
Or see this region's nucleotide sequence