Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS24175

Experiment: methyl 3-keto-a-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS24170 and CA265_RS24175 are separated by 494 nucleotidesCA265_RS24175 and CA265_RS24180 are separated by 174 nucleotides CA265_RS24170: CA265_RS24170 - MFS transporter, at 5,886,939 to 5,888,144 _RS24170 CA265_RS24175: CA265_RS24175 - hypothetical protein, at 5,888,639 to 5,889,442 _RS24175 CA265_RS24180: CA265_RS24180 - acriflavin resistance protein, at 5,889,617 to 5,892,811 _RS24180 Position (kb) 5888 5889 5890Strain fitness (log2 ratio) -2 -1 0 1 2at 5887.712 kb on + strand, within CA265_RS24170at 5887.790 kb on + strand, within CA265_RS24170at 5887.821 kb on - strand, within CA265_RS24170at 5887.835 kb on - strand, within CA265_RS24170at 5887.835 kb on - strand, within CA265_RS24170at 5887.841 kb on - strand, within CA265_RS24170at 5887.871 kb on + strand, within CA265_RS24170at 5887.937 kb on - strand, within CA265_RS24170at 5887.938 kb on + strand, within CA265_RS24170at 5887.939 kb on - strand, within CA265_RS24170at 5887.939 kb on - strand, within CA265_RS24170at 5887.939 kb on - strand, within CA265_RS24170at 5887.939 kb on - strand, within CA265_RS24170at 5887.946 kb on - strand, within CA265_RS24170at 5887.959 kb on - strand, within CA265_RS24170at 5888.008 kb on - strand, within CA265_RS24170at 5888.038 kb on + strandat 5888.039 kb on - strandat 5888.039 kb on - strandat 5888.044 kb on - strandat 5888.048 kb on - strandat 5888.056 kb on + strandat 5888.108 kb on + strandat 5888.138 kb on - strandat 5888.143 kb on - strandat 5888.207 kb on + strandat 5888.331 kb on + strandat 5888.332 kb on - strandat 5888.337 kb on + strandat 5888.337 kb on + strandat 5888.342 kb on + strandat 5888.527 kb on - strandat 5888.630 kb on - strandat 5888.635 kb on + strandat 5888.636 kb on - strandat 5888.636 kb on - strandat 5888.636 kb on - strandat 5888.640 kb on + strandat 5888.700 kb on - strandat 5888.740 kb on + strand, within CA265_RS24175at 5888.740 kb on + strand, within CA265_RS24175at 5888.742 kb on + strand, within CA265_RS24175at 5888.742 kb on + strand, within CA265_RS24175at 5888.743 kb on - strand, within CA265_RS24175at 5888.767 kb on - strand, within CA265_RS24175at 5888.820 kb on - strand, within CA265_RS24175at 5888.866 kb on - strand, within CA265_RS24175at 5888.898 kb on - strand, within CA265_RS24175at 5888.899 kb on + strand, within CA265_RS24175at 5888.943 kb on + strand, within CA265_RS24175at 5889.117 kb on + strand, within CA265_RS24175at 5889.136 kb on + strand, within CA265_RS24175at 5889.154 kb on + strand, within CA265_RS24175at 5889.155 kb on - strand, within CA265_RS24175at 5889.156 kb on + strand, within CA265_RS24175at 5889.186 kb on + strand, within CA265_RS24175at 5889.250 kb on + strand, within CA265_RS24175at 5889.281 kb on - strand, within CA265_RS24175at 5889.297 kb on + strand, within CA265_RS24175at 5889.297 kb on + strand, within CA265_RS24175at 5889.316 kb on + strand, within CA265_RS24175at 5889.317 kb on - strand, within CA265_RS24175at 5889.317 kb on - strand, within CA265_RS24175at 5889.353 kb on + strand, within CA265_RS24175at 5889.454 kb on + strandat 5889.455 kb on - strandat 5889.455 kb on - strandat 5889.455 kb on - strandat 5889.494 kb on + strandat 5889.603 kb on - strandat 5889.663 kb on + strandat 5889.664 kb on - strandat 5889.730 kb on + strandat 5889.741 kb on - strandat 5889.741 kb on - strandat 5889.745 kb on - strandat 5889.765 kb on - strandat 5889.872 kb on + strandat 5889.894 kb on - strandat 5889.963 kb on - strand, within CA265_RS24180at 5890.097 kb on + strand, within CA265_RS24180at 5890.132 kb on + strand, within CA265_RS24180at 5890.133 kb on - strand, within CA265_RS24180at 5890.172 kb on + strand, within CA265_RS24180at 5890.187 kb on + strand, within CA265_RS24180at 5890.187 kb on + strand, within CA265_RS24180at 5890.188 kb on - strand, within CA265_RS24180at 5890.195 kb on + strand, within CA265_RS24180at 5890.199 kb on + strand, within CA265_RS24180at 5890.204 kb on + strand, within CA265_RS24180at 5890.249 kb on - strand, within CA265_RS24180at 5890.298 kb on + strand, within CA265_RS24180at 5890.378 kb on + strand, within CA265_RS24180at 5890.441 kb on + strand, within CA265_RS24180

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C)
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5,887,712 + CA265_RS24170 0.64 -0.2
5,887,790 + CA265_RS24170 0.71 +1.1
5,887,821 - CA265_RS24170 0.73 +0.1
5,887,835 - CA265_RS24170 0.74 +0.2
5,887,835 - CA265_RS24170 0.74 +0.2
5,887,841 - CA265_RS24170 0.75 +0.9
5,887,871 + CA265_RS24170 0.77 +0.3
5,887,937 - CA265_RS24170 0.83 +0.4
5,887,938 + CA265_RS24170 0.83 -0.0
5,887,939 - CA265_RS24170 0.83 +0.0
5,887,939 - CA265_RS24170 0.83 +0.4
5,887,939 - CA265_RS24170 0.83 +0.2
5,887,939 - CA265_RS24170 0.83 -0.0
5,887,946 - CA265_RS24170 0.83 -0.1
5,887,959 - CA265_RS24170 0.85 +1.2
5,888,008 - CA265_RS24170 0.89 +1.0
5,888,038 + -1.0
5,888,039 - -1.9
5,888,039 - +2.1
5,888,044 - -0.2
5,888,048 - +0.4
5,888,056 + -0.5
5,888,108 + +0.3
5,888,138 - -0.0
5,888,143 - -0.2
5,888,207 + -0.4
5,888,331 + +1.7
5,888,332 - +2.3
5,888,337 + +2.6
5,888,337 + -0.7
5,888,342 + +0.1
5,888,527 - -0.7
5,888,630 - +0.4
5,888,635 + -0.4
5,888,636 - +2.3
5,888,636 - -0.2
5,888,636 - +0.3
5,888,640 + +0.6
5,888,700 - -0.6
5,888,740 + CA265_RS24175 0.13 -1.3
5,888,740 + CA265_RS24175 0.13 -1.7
5,888,742 + CA265_RS24175 0.13 -1.6
5,888,742 + CA265_RS24175 0.13 -1.0
5,888,743 - CA265_RS24175 0.13 -1.4
5,888,767 - CA265_RS24175 0.16 -0.0
5,888,820 - CA265_RS24175 0.23 -0.6
5,888,866 - CA265_RS24175 0.28 -0.6
5,888,898 - CA265_RS24175 0.32 -0.5
5,888,899 + CA265_RS24175 0.32 -0.9
5,888,943 + CA265_RS24175 0.38 +0.1
5,889,117 + CA265_RS24175 0.59 -0.3
5,889,136 + CA265_RS24175 0.62 -0.8
5,889,154 + CA265_RS24175 0.64 -1.2
5,889,155 - CA265_RS24175 0.64 -0.4
5,889,156 + CA265_RS24175 0.64 -0.2
5,889,186 + CA265_RS24175 0.68 -1.6
5,889,250 + CA265_RS24175 0.76 -0.9
5,889,281 - CA265_RS24175 0.80 -0.8
5,889,297 + CA265_RS24175 0.82 +0.7
5,889,297 + CA265_RS24175 0.82 -1.5
5,889,316 + CA265_RS24175 0.84 -0.0
5,889,317 - CA265_RS24175 0.84 +0.2
5,889,317 - CA265_RS24175 0.84 -0.0
5,889,353 + CA265_RS24175 0.89 +0.3
5,889,454 + +0.3
5,889,455 - +0.1
5,889,455 - +0.1
5,889,455 - +1.2
5,889,494 + -0.9
5,889,603 - -0.9
5,889,663 + +0.6
5,889,664 - -0.9
5,889,730 + +0.4
5,889,741 - -0.3
5,889,741 - -0.7
5,889,745 - -1.6
5,889,765 - -1.4
5,889,872 + -0.3
5,889,894 - -0.4
5,889,963 - CA265_RS24180 0.11 +0.1
5,890,097 + CA265_RS24180 0.15 +0.9
5,890,132 + CA265_RS24180 0.16 -0.1
5,890,133 - CA265_RS24180 0.16 +0.2
5,890,172 + CA265_RS24180 0.17 +0.6
5,890,187 + CA265_RS24180 0.18 +1.2
5,890,187 + CA265_RS24180 0.18 +0.9
5,890,188 - CA265_RS24180 0.18 -1.0
5,890,195 + CA265_RS24180 0.18 +0.6
5,890,199 + CA265_RS24180 0.18 +0.3
5,890,204 + CA265_RS24180 0.18 +0.5
5,890,249 - CA265_RS24180 0.20 -1.1
5,890,298 + CA265_RS24180 0.21 +0.1
5,890,378 + CA265_RS24180 0.24 -0.7
5,890,441 + CA265_RS24180 0.26 +0.6

Or see this region's nucleotide sequence