Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS15710 and CA265_RS15715 are separated by 172 nucleotides CA265_RS15715 and CA265_RS15720 are separated by 90 nucleotides CA265_RS15720 and CA265_RS15725 are separated by 113 nucleotides
CA265_RS15710: CA265_RS15710 - alpha-glucosidase, at 3,960,016 to 3,962,121
_RS15710
CA265_RS15715: CA265_RS15715 - hypothetical protein, at 3,962,294 to 3,963,547
_RS15715
CA265_RS15720: CA265_RS15720 - hypothetical protein, at 3,963,638 to 3,964,018
_RS15720
CA265_RS15725: CA265_RS15725 - hypothetical protein, at 3,964,132 to 3,964,497
_RS15725
Position (kb)
3962
3963
3964 Strain fitness (log2 ratio)
-2
-1
0
1 at 3961.355 kb on + strand, within CA265_RS15710 at 3961.439 kb on + strand, within CA265_RS15710 at 3961.472 kb on + strand, within CA265_RS15710 at 3961.473 kb on - strand, within CA265_RS15710 at 3961.608 kb on - strand, within CA265_RS15710 at 3961.608 kb on - strand, within CA265_RS15710 at 3961.623 kb on - strand, within CA265_RS15710 at 3961.647 kb on + strand, within CA265_RS15710 at 3961.648 kb on - strand, within CA265_RS15710 at 3961.686 kb on + strand, within CA265_RS15710 at 3961.697 kb on + strand, within CA265_RS15710 at 3961.698 kb on - strand, within CA265_RS15710 at 3961.698 kb on - strand, within CA265_RS15710 at 3961.703 kb on - strand, within CA265_RS15710 at 3961.760 kb on - strand, within CA265_RS15710 at 3961.770 kb on + strand, within CA265_RS15710 at 3961.773 kb on + strand, within CA265_RS15710 at 3961.773 kb on + strand, within CA265_RS15710 at 3961.782 kb on + strand, within CA265_RS15710 at 3961.799 kb on - strand, within CA265_RS15710 at 3961.821 kb on - strand, within CA265_RS15710 at 3961.829 kb on - strand, within CA265_RS15710 at 3961.896 kb on + strand, within CA265_RS15710 at 3961.961 kb on - strand at 3961.999 kb on + strand at 3961.999 kb on + strand at 3961.999 kb on + strand at 3962.000 kb on - strand at 3962.037 kb on + strand at 3962.037 kb on + strand at 3962.170 kb on + strand at 3962.175 kb on - strand at 3962.187 kb on + strand at 3962.188 kb on - strand at 3962.188 kb on - strand at 3962.222 kb on + strand at 3962.222 kb on + strand at 3962.240 kb on + strand at 3962.240 kb on + strand at 3962.241 kb on - strand at 3962.288 kb on + strand at 3962.311 kb on + strand at 3962.311 kb on + strand at 3962.403 kb on - strand at 3962.465 kb on + strand, within CA265_RS15715 at 3962.468 kb on - strand, within CA265_RS15715 at 3962.471 kb on + strand, within CA265_RS15715 at 3962.471 kb on + strand at 3962.539 kb on - strand, within CA265_RS15715 at 3962.539 kb on - strand, within CA265_RS15715 at 3962.539 kb on - strand, within CA265_RS15715 at 3962.539 kb on - strand, within CA265_RS15715 at 3962.618 kb on + strand, within CA265_RS15715 at 3962.625 kb on + strand, within CA265_RS15715 at 3962.625 kb on + strand, within CA265_RS15715 at 3962.626 kb on - strand, within CA265_RS15715 at 3962.626 kb on - strand, within CA265_RS15715 at 3962.749 kb on + strand, within CA265_RS15715 at 3962.794 kb on + strand, within CA265_RS15715 at 3962.882 kb on - strand, within CA265_RS15715 at 3962.910 kb on + strand, within CA265_RS15715 at 3962.910 kb on + strand, within CA265_RS15715 at 3962.915 kb on - strand, within CA265_RS15715 at 3962.969 kb on - strand, within CA265_RS15715 at 3963.073 kb on + strand, within CA265_RS15715 at 3963.110 kb on + strand, within CA265_RS15715 at 3963.197 kb on + strand, within CA265_RS15715 at 3963.245 kb on - strand, within CA265_RS15715 at 3963.298 kb on + strand, within CA265_RS15715 at 3963.444 kb on + strand at 3963.444 kb on + strand at 3963.445 kb on - strand at 3963.475 kb on + strand at 3963.534 kb on - strand at 3963.592 kb on + strand at 3963.611 kb on + strand at 3963.612 kb on - strand at 3963.613 kb on + strand at 3963.614 kb on - strand at 3963.736 kb on + strand, within CA265_RS15720 at 3963.800 kb on + strand, within CA265_RS15720 at 3963.846 kb on + strand, within CA265_RS15720 at 3963.847 kb on - strand, within CA265_RS15720 at 3963.859 kb on + strand, within CA265_RS15720 at 3963.860 kb on - strand, within CA265_RS15720 at 3963.891 kb on - strand, within CA265_RS15720 at 3963.917 kb on - strand at 3963.987 kb on + strand at 3963.987 kb on + strand at 3964.097 kb on - strand at 3964.126 kb on + strand at 3964.194 kb on - strand, within CA265_RS15725 at 3964.232 kb on + strand, within CA265_RS15725 at 3964.237 kb on - strand, within CA265_RS15725 at 3964.237 kb on - strand, within CA265_RS15725 at 3964.327 kb on + strand, within CA265_RS15725 at 3964.358 kb on + strand, within CA265_RS15725 at 3964.377 kb on + strand, within CA265_RS15725 at 3964.378 kb on - strand, within CA265_RS15725 at 3964.378 kb on - strand, within CA265_RS15725 at 3964.378 kb on - strand, within CA265_RS15725 at 3964.410 kb on + strand, within CA265_RS15725 at 3964.410 kb on + strand, within CA265_RS15725 at 3964.411 kb on - strand, within CA265_RS15725 at 3964.501 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 3,961,355 + CA265_RS15710 0.64 +0.2 3,961,439 + CA265_RS15710 0.68 -0.5 3,961,472 + CA265_RS15710 0.69 +0.1 3,961,473 - CA265_RS15710 0.69 +0.1 3,961,608 - CA265_RS15710 0.76 -0.1 3,961,608 - CA265_RS15710 0.76 +0.4 3,961,623 - CA265_RS15710 0.76 -1.4 3,961,647 + CA265_RS15710 0.77 +1.0 3,961,648 - CA265_RS15710 0.77 +0.7 3,961,686 + CA265_RS15710 0.79 -0.5 3,961,697 + CA265_RS15710 0.80 +0.6 3,961,698 - CA265_RS15710 0.80 +0.3 3,961,698 - CA265_RS15710 0.80 -0.5 3,961,703 - CA265_RS15710 0.80 -0.2 3,961,760 - CA265_RS15710 0.83 -0.6 3,961,770 + CA265_RS15710 0.83 -0.5 3,961,773 + CA265_RS15710 0.83 +0.3 3,961,773 + CA265_RS15710 0.83 -0.3 3,961,782 + CA265_RS15710 0.84 +0.5 3,961,799 - CA265_RS15710 0.85 -0.1 3,961,821 - CA265_RS15710 0.86 +0.3 3,961,829 - CA265_RS15710 0.86 -1.2 3,961,896 + CA265_RS15710 0.89 +0.7 3,961,961 - +0.3 3,961,999 + -1.8 3,961,999 + -0.0 3,961,999 + +0.0 3,962,000 - -1.8 3,962,037 + -1.0 3,962,037 + -0.1 3,962,170 + -0.5 3,962,175 - -0.4 3,962,187 + -1.1 3,962,188 - +0.3 3,962,188 - -0.1 3,962,222 + -1.7 3,962,222 + -0.8 3,962,240 + +0.5 3,962,240 + -1.4 3,962,241 - -1.5 3,962,288 + -0.6 3,962,311 + +0.1 3,962,311 + +0.1 3,962,403 - -0.5 3,962,465 + CA265_RS15715 0.14 +0.3 3,962,468 - CA265_RS15715 0.14 -0.2 3,962,471 + CA265_RS15715 0.14 +0.9 3,962,471 + -1.2 3,962,539 - CA265_RS15715 0.20 -0.2 3,962,539 - CA265_RS15715 0.20 +0.6 3,962,539 - CA265_RS15715 0.20 +0.8 3,962,539 - CA265_RS15715 0.20 -0.1 3,962,618 + CA265_RS15715 0.26 -0.3 3,962,625 + CA265_RS15715 0.26 -0.4 3,962,625 + CA265_RS15715 0.26 -0.0 3,962,626 - CA265_RS15715 0.26 +0.1 3,962,626 - CA265_RS15715 0.26 +0.3 3,962,749 + CA265_RS15715 0.36 +0.6 3,962,794 + CA265_RS15715 0.40 +1.0 3,962,882 - CA265_RS15715 0.47 -1.8 3,962,910 + CA265_RS15715 0.49 +0.1 3,962,910 + CA265_RS15715 0.49 +0.0 3,962,915 - CA265_RS15715 0.50 -1.1 3,962,969 - CA265_RS15715 0.54 -0.1 3,963,073 + CA265_RS15715 0.62 -0.0 3,963,110 + CA265_RS15715 0.65 +0.5 3,963,197 + CA265_RS15715 0.72 -0.6 3,963,245 - CA265_RS15715 0.76 -0.8 3,963,298 + CA265_RS15715 0.80 -0.2 3,963,444 + -0.7 3,963,444 + -0.4 3,963,445 - +0.8 3,963,475 + -0.2 3,963,534 - -2.3 3,963,592 + +0.3 3,963,611 + +0.8 3,963,612 - -0.4 3,963,613 + +0.2 3,963,614 - -0.7 3,963,736 + CA265_RS15720 0.26 -0.9 3,963,800 + CA265_RS15720 0.43 -0.5 3,963,846 + CA265_RS15720 0.55 -1.7 3,963,847 - CA265_RS15720 0.55 -1.0 3,963,859 + CA265_RS15720 0.58 -1.4 3,963,860 - CA265_RS15720 0.58 -0.8 3,963,891 - CA265_RS15720 0.66 +0.3 3,963,917 - +1.5 3,963,987 + -2.3 3,963,987 + -0.4 3,964,097 - -0.3 3,964,126 + -0.7 3,964,194 - CA265_RS15725 0.17 -0.6 3,964,232 + CA265_RS15725 0.27 -0.5 3,964,237 - CA265_RS15725 0.29 -0.1 3,964,237 - CA265_RS15725 0.29 -1.5 3,964,327 + CA265_RS15725 0.53 -0.5 3,964,358 + CA265_RS15725 0.62 +0.1 3,964,377 + CA265_RS15725 0.67 -0.9 3,964,378 - CA265_RS15725 0.67 +0.2 3,964,378 - CA265_RS15725 0.67 +0.3 3,964,378 - CA265_RS15725 0.67 +0.8 3,964,410 + CA265_RS15725 0.76 -0.4 3,964,410 + CA265_RS15725 0.76 -1.2 3,964,411 - CA265_RS15725 0.76 +0.2 3,964,501 + -1.2
Or see this region's nucleotide sequence