Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02130 and CA265_RS02135 are separated by 196 nucleotides CA265_RS02135 and CA265_RS02140 are separated by 442 nucleotides
CA265_RS02130: CA265_RS02130 - penicillin acylase family protein, at 533,023 to 535,452
_RS02130
CA265_RS02135: CA265_RS02135 - TonB-dependent receptor, at 535,649 to 538,540
_RS02135
CA265_RS02140: CA265_RS02140 - glycosyl hydrolase, at 538,983 to 541,445
_RS02140
Position (kb) 535
536
537
538
539 Strain fitness (log2 ratio) -2
-1
0
1 at 534.827 kb on + strand, within CA265_RS02130 at 534.850 kb on + strand, within CA265_RS02130 at 534.851 kb on - strand, within CA265_RS02130 at 534.854 kb on - strand, within CA265_RS02130 at 534.854 kb on - strand, within CA265_RS02130 at 534.930 kb on - strand, within CA265_RS02130 at 534.935 kb on - strand, within CA265_RS02130 at 534.935 kb on - strand, within CA265_RS02130 at 534.966 kb on + strand, within CA265_RS02130 at 534.969 kb on - strand, within CA265_RS02130 at 534.989 kb on + strand, within CA265_RS02130 at 534.990 kb on - strand, within CA265_RS02130 at 535.055 kb on + strand, within CA265_RS02130 at 535.102 kb on - strand, within CA265_RS02130 at 535.102 kb on - strand, within CA265_RS02130 at 535.181 kb on - strand, within CA265_RS02130 at 535.184 kb on + strand, within CA265_RS02130 at 535.199 kb on + strand, within CA265_RS02130 at 535.200 kb on - strand, within CA265_RS02130 at 535.228 kb on - strand at 535.271 kb on - strand at 535.271 kb on - strand at 535.351 kb on + strand at 535.374 kb on + strand at 535.375 kb on - strand at 535.447 kb on - strand at 535.502 kb on - strand at 535.532 kb on - strand at 535.612 kb on + strand at 535.684 kb on - strand at 535.727 kb on - strand at 535.729 kb on + strand at 535.754 kb on - strand at 535.788 kb on + strand at 535.788 kb on + strand at 535.793 kb on - strand at 535.847 kb on - strand at 535.876 kb on - strand at 535.887 kb on - strand at 535.905 kb on + strand at 535.983 kb on + strand, within CA265_RS02135 at 535.984 kb on - strand, within CA265_RS02135 at 536.000 kb on - strand, within CA265_RS02135 at 536.000 kb on - strand, within CA265_RS02135 at 536.013 kb on + strand, within CA265_RS02135 at 536.056 kb on + strand, within CA265_RS02135 at 536.101 kb on + strand, within CA265_RS02135 at 536.122 kb on + strand, within CA265_RS02135 at 536.123 kb on - strand, within CA265_RS02135 at 536.153 kb on - strand, within CA265_RS02135 at 536.177 kb on - strand, within CA265_RS02135 at 536.180 kb on - strand, within CA265_RS02135 at 536.245 kb on + strand, within CA265_RS02135 at 536.274 kb on + strand, within CA265_RS02135 at 536.274 kb on + strand, within CA265_RS02135 at 536.274 kb on + strand, within CA265_RS02135 at 536.275 kb on - strand, within CA265_RS02135 at 536.278 kb on + strand, within CA265_RS02135 at 536.329 kb on + strand, within CA265_RS02135 at 536.329 kb on + strand, within CA265_RS02135 at 536.369 kb on - strand, within CA265_RS02135 at 536.539 kb on + strand, within CA265_RS02135 at 536.543 kb on - strand, within CA265_RS02135 at 536.543 kb on - strand, within CA265_RS02135 at 536.543 kb on - strand, within CA265_RS02135 at 536.546 kb on + strand, within CA265_RS02135 at 536.546 kb on + strand, within CA265_RS02135 at 536.547 kb on - strand, within CA265_RS02135 at 536.766 kb on + strand, within CA265_RS02135 at 536.767 kb on - strand, within CA265_RS02135 at 536.797 kb on - strand, within CA265_RS02135 at 536.829 kb on - strand, within CA265_RS02135 at 536.872 kb on + strand, within CA265_RS02135 at 536.872 kb on + strand, within CA265_RS02135 at 536.873 kb on - strand, within CA265_RS02135 at 536.937 kb on + strand, within CA265_RS02135 at 536.942 kb on + strand, within CA265_RS02135 at 537.095 kb on + strand, within CA265_RS02135 at 537.126 kb on - strand, within CA265_RS02135 at 537.151 kb on + strand, within CA265_RS02135 at 537.152 kb on - strand, within CA265_RS02135 at 537.155 kb on - strand, within CA265_RS02135 at 537.197 kb on + strand, within CA265_RS02135 at 537.198 kb on - strand, within CA265_RS02135 at 537.311 kb on - strand, within CA265_RS02135 at 537.313 kb on + strand, within CA265_RS02135 at 537.320 kb on - strand, within CA265_RS02135 at 537.329 kb on - strand, within CA265_RS02135 at 537.330 kb on + strand, within CA265_RS02135 at 537.373 kb on - strand, within CA265_RS02135 at 537.374 kb on + strand, within CA265_RS02135 at 537.445 kb on + strand, within CA265_RS02135 at 537.453 kb on + strand at 537.454 kb on - strand, within CA265_RS02135 at 537.495 kb on + strand, within CA265_RS02135 at 537.496 kb on - strand, within CA265_RS02135 at 537.539 kb on - strand, within CA265_RS02135 at 537.551 kb on + strand, within CA265_RS02135 at 537.623 kb on - strand, within CA265_RS02135 at 537.658 kb on + strand, within CA265_RS02135 at 537.688 kb on + strand, within CA265_RS02135 at 537.746 kb on + strand, within CA265_RS02135 at 537.746 kb on + strand, within CA265_RS02135 at 537.784 kb on - strand, within CA265_RS02135 at 537.793 kb on + strand, within CA265_RS02135 at 537.794 kb on - strand, within CA265_RS02135 at 537.794 kb on - strand, within CA265_RS02135 at 537.795 kb on + strand, within CA265_RS02135 at 537.796 kb on - strand, within CA265_RS02135 at 537.812 kb on - strand, within CA265_RS02135 at 537.815 kb on + strand, within CA265_RS02135 at 537.847 kb on + strand, within CA265_RS02135 at 537.847 kb on + strand, within CA265_RS02135 at 537.869 kb on + strand, within CA265_RS02135 at 537.920 kb on + strand, within CA265_RS02135 at 537.966 kb on - strand, within CA265_RS02135 at 537.979 kb on + strand, within CA265_RS02135 at 537.991 kb on - strand, within CA265_RS02135 at 538.017 kb on - strand, within CA265_RS02135 at 538.022 kb on + strand, within CA265_RS02135 at 538.022 kb on + strand, within CA265_RS02135 at 538.023 kb on - strand, within CA265_RS02135 at 538.025 kb on + strand, within CA265_RS02135 at 538.025 kb on + strand, within CA265_RS02135 at 538.026 kb on - strand, within CA265_RS02135 at 538.026 kb on - strand, within CA265_RS02135 at 538.035 kb on - strand, within CA265_RS02135 at 538.079 kb on - strand, within CA265_RS02135 at 538.092 kb on - strand, within CA265_RS02135 at 538.095 kb on + strand, within CA265_RS02135 at 538.132 kb on + strand, within CA265_RS02135 at 538.133 kb on - strand, within CA265_RS02135 at 538.152 kb on + strand, within CA265_RS02135 at 538.175 kb on - strand, within CA265_RS02135 at 538.198 kb on - strand, within CA265_RS02135 at 538.198 kb on - strand, within CA265_RS02135 at 538.202 kb on + strand, within CA265_RS02135 at 538.203 kb on - strand, within CA265_RS02135 at 538.229 kb on - strand, within CA265_RS02135 at 538.232 kb on + strand, within CA265_RS02135 at 538.232 kb on + strand, within CA265_RS02135 at 538.234 kb on + strand, within CA265_RS02135 at 538.235 kb on - strand, within CA265_RS02135 at 538.268 kb on - strand at 538.268 kb on - strand at 538.268 kb on - strand at 538.268 kb on - strand at 538.322 kb on + strand at 538.392 kb on + strand at 538.393 kb on - strand at 538.393 kb on - strand at 538.425 kb on + strand at 538.457 kb on - strand at 538.518 kb on + strand at 538.526 kb on - strand at 538.539 kb on - strand at 538.568 kb on + strand at 538.568 kb on + strand at 538.580 kb on - strand at 538.580 kb on - strand at 538.582 kb on - strand at 538.647 kb on - strand at 538.671 kb on - strand at 538.682 kb on - strand at 538.687 kb on + strand at 538.688 kb on - strand at 538.738 kb on + strand at 538.739 kb on - strand at 538.747 kb on + strand at 538.784 kb on + strand at 538.813 kb on + strand at 538.814 kb on - strand at 538.916 kb on + strand at 538.916 kb on + strand at 538.920 kb on - strand at 538.932 kb on + strand at 538.978 kb on + strand at 538.978 kb on + strand at 538.978 kb on + strand at 539.053 kb on + strand at 539.053 kb on + strand at 539.066 kb on - strand at 539.070 kb on - strand at 539.168 kb on - strand at 539.192 kb on + strand at 539.193 kb on - strand at 539.193 kb on - strand at 539.318 kb on + strand, within CA265_RS02140 at 539.318 kb on + strand, within CA265_RS02140 at 539.375 kb on + strand, within CA265_RS02140 at 539.389 kb on + strand, within CA265_RS02140 at 539.389 kb on + strand, within CA265_RS02140 at 539.393 kb on + strand, within CA265_RS02140 at 539.393 kb on + strand, within CA265_RS02140 at 539.414 kb on + strand, within CA265_RS02140 at 539.453 kb on + strand, within CA265_RS02140 at 539.457 kb on + strand, within CA265_RS02140 at 539.458 kb on - strand, within CA265_RS02140 at 539.501 kb on - strand, within CA265_RS02140 at 539.501 kb on - strand, within CA265_RS02140 at 539.507 kb on + strand, within CA265_RS02140
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 534,827 + CA265_RS02130 0.74 +0.6 534,850 + CA265_RS02130 0.75 -0.1 534,851 - CA265_RS02130 0.75 +0.6 534,854 - CA265_RS02130 0.75 +0.0 534,854 - CA265_RS02130 0.75 +0.1 534,930 - CA265_RS02130 0.78 -0.6 534,935 - CA265_RS02130 0.79 +0.1 534,935 - CA265_RS02130 0.79 -0.2 534,966 + CA265_RS02130 0.80 +1.1 534,969 - CA265_RS02130 0.80 -1.2 534,989 + CA265_RS02130 0.81 +0.2 534,990 - CA265_RS02130 0.81 +0.0 535,055 + CA265_RS02130 0.84 +0.1 535,102 - CA265_RS02130 0.86 +1.1 535,102 - CA265_RS02130 0.86 -0.9 535,181 - CA265_RS02130 0.89 -0.1 535,184 + CA265_RS02130 0.89 +0.0 535,199 + CA265_RS02130 0.90 +0.1 535,200 - CA265_RS02130 0.90 -0.2 535,228 - -1.1 535,271 - +0.3 535,271 - +0.2 535,351 + +1.3 535,374 + +0.7 535,375 - +0.5 535,447 - +1.5 535,502 - +0.1 535,532 - -0.1 535,612 + +0.7 535,684 - +0.3 535,727 - +0.1 535,729 + +1.5 535,754 - +0.5 535,788 + +0.4 535,788 + -2.5 535,793 - +0.1 535,847 - -0.4 535,876 - +0.1 535,887 - -0.5 535,905 + -0.1 535,983 + CA265_RS02135 0.12 -0.5 535,984 - CA265_RS02135 0.12 -1.3 536,000 - CA265_RS02135 0.12 +1.1 536,000 - CA265_RS02135 0.12 -0.3 536,013 + CA265_RS02135 0.13 -1.2 536,056 + CA265_RS02135 0.14 -0.1 536,101 + CA265_RS02135 0.16 -0.3 536,122 + CA265_RS02135 0.16 -0.5 536,123 - CA265_RS02135 0.16 +0.3 536,153 - CA265_RS02135 0.17 -1.5 536,177 - CA265_RS02135 0.18 -0.0 536,180 - CA265_RS02135 0.18 -0.8 536,245 + CA265_RS02135 0.21 +0.2 536,274 + CA265_RS02135 0.22 +0.2 536,274 + CA265_RS02135 0.22 -0.5 536,274 + CA265_RS02135 0.22 -1.6 536,275 - CA265_RS02135 0.22 +0.1 536,278 + CA265_RS02135 0.22 +0.1 536,329 + CA265_RS02135 0.24 -0.4 536,329 + CA265_RS02135 0.24 -0.5 536,369 - CA265_RS02135 0.25 -0.0 536,539 + CA265_RS02135 0.31 -1.4 536,543 - CA265_RS02135 0.31 +0.1 536,543 - CA265_RS02135 0.31 -0.3 536,543 - CA265_RS02135 0.31 +0.3 536,546 + CA265_RS02135 0.31 +0.5 536,546 + CA265_RS02135 0.31 -0.3 536,547 - CA265_RS02135 0.31 +0.4 536,766 + CA265_RS02135 0.39 +0.5 536,767 - CA265_RS02135 0.39 -1.4 536,797 - CA265_RS02135 0.40 +0.0 536,829 - CA265_RS02135 0.41 -0.4 536,872 + CA265_RS02135 0.42 -0.1 536,872 + CA265_RS02135 0.42 +0.7 536,873 - CA265_RS02135 0.42 +0.5 536,937 + CA265_RS02135 0.45 +1.2 536,942 + CA265_RS02135 0.45 -1.2 537,095 + CA265_RS02135 0.50 -0.4 537,126 - CA265_RS02135 0.51 -1.2 537,151 + CA265_RS02135 0.52 +1.1 537,152 - CA265_RS02135 0.52 +0.6 537,155 - CA265_RS02135 0.52 -0.5 537,197 + CA265_RS02135 0.54 -0.9 537,198 - CA265_RS02135 0.54 -0.3 537,311 - CA265_RS02135 0.57 -0.3 537,313 + CA265_RS02135 0.58 +1.0 537,320 - CA265_RS02135 0.58 -0.9 537,329 - CA265_RS02135 0.58 +0.1 537,330 + CA265_RS02135 0.58 -0.3 537,373 - CA265_RS02135 0.60 -1.1 537,374 + CA265_RS02135 0.60 -1.0 537,445 + CA265_RS02135 0.62 +0.3 537,453 + -0.1 537,454 - CA265_RS02135 0.62 +0.7 537,495 + CA265_RS02135 0.64 -0.5 537,496 - CA265_RS02135 0.64 +0.3 537,539 - CA265_RS02135 0.65 -0.7 537,551 + CA265_RS02135 0.66 -1.5 537,623 - CA265_RS02135 0.68 +0.1 537,658 + CA265_RS02135 0.69 +0.0 537,688 + CA265_RS02135 0.71 +0.3 537,746 + CA265_RS02135 0.73 +0.3 537,746 + CA265_RS02135 0.73 -0.5 537,784 - CA265_RS02135 0.74 -0.2 537,793 + CA265_RS02135 0.74 -0.3 537,794 - CA265_RS02135 0.74 +0.4 537,794 - CA265_RS02135 0.74 -0.4 537,795 + CA265_RS02135 0.74 -0.1 537,796 - CA265_RS02135 0.74 +0.6 537,812 - CA265_RS02135 0.75 +0.8 537,815 + CA265_RS02135 0.75 -1.0 537,847 + CA265_RS02135 0.76 -0.7 537,847 + CA265_RS02135 0.76 -0.2 537,869 + CA265_RS02135 0.77 +1.2 537,920 + CA265_RS02135 0.79 -0.4 537,966 - CA265_RS02135 0.80 +0.2 537,979 + CA265_RS02135 0.81 -0.6 537,991 - CA265_RS02135 0.81 +0.4 538,017 - CA265_RS02135 0.82 -0.4 538,022 + CA265_RS02135 0.82 -2.0 538,022 + CA265_RS02135 0.82 +0.5 538,023 - CA265_RS02135 0.82 +0.8 538,025 + CA265_RS02135 0.82 -0.4 538,025 + CA265_RS02135 0.82 -0.7 538,026 - CA265_RS02135 0.82 +0.2 538,026 - CA265_RS02135 0.82 +0.3 538,035 - CA265_RS02135 0.83 +0.1 538,079 - CA265_RS02135 0.84 +0.1 538,092 - CA265_RS02135 0.84 -0.2 538,095 + CA265_RS02135 0.85 -0.4 538,132 + CA265_RS02135 0.86 +1.1 538,133 - CA265_RS02135 0.86 -0.7 538,152 + CA265_RS02135 0.87 -0.2 538,175 - CA265_RS02135 0.87 +0.4 538,198 - CA265_RS02135 0.88 +0.3 538,198 - CA265_RS02135 0.88 +0.2 538,202 + CA265_RS02135 0.88 -0.7 538,203 - CA265_RS02135 0.88 +0.4 538,229 - CA265_RS02135 0.89 +0.8 538,232 + CA265_RS02135 0.89 -1.3 538,232 + CA265_RS02135 0.89 -0.2 538,234 + CA265_RS02135 0.89 +0.2 538,235 - CA265_RS02135 0.89 +0.6 538,268 - +0.0 538,268 - +0.0 538,268 - +0.1 538,268 - -0.1 538,322 + -0.8 538,392 + -0.6 538,393 - +0.1 538,393 - +0.1 538,425 + -1.3 538,457 - +0.7 538,518 + -0.7 538,526 - -0.5 538,539 - -0.4 538,568 + +1.0 538,568 + -0.5 538,580 - +0.3 538,580 - +1.0 538,582 - +0.5 538,647 - +0.3 538,671 - -1.0 538,682 - +0.3 538,687 + +0.3 538,688 - +0.4 538,738 + -0.3 538,739 - +0.2 538,747 + -0.1 538,784 + +0.4 538,813 + -0.6 538,814 - -0.7 538,916 + -0.1 538,916 + -0.7 538,920 - -2.2 538,932 + -0.4 538,978 + +0.8 538,978 + +0.1 538,978 + +0.2 539,053 + +0.8 539,053 + +0.7 539,066 - +0.3 539,070 - +0.4 539,168 - +1.1 539,192 + +0.2 539,193 - +0.5 539,193 - -0.6 539,318 + CA265_RS02140 0.14 -0.5 539,318 + CA265_RS02140 0.14 -0.2 539,375 + CA265_RS02140 0.16 +0.3 539,389 + CA265_RS02140 0.16 +0.1 539,389 + CA265_RS02140 0.16 -0.9 539,393 + CA265_RS02140 0.17 -0.2 539,393 + CA265_RS02140 0.17 -0.4 539,414 + CA265_RS02140 0.17 +0.1 539,453 + CA265_RS02140 0.19 -0.0 539,457 + CA265_RS02140 0.19 +0.1 539,458 - CA265_RS02140 0.19 +0.4 539,501 - CA265_RS02140 0.21 -0.7 539,501 - CA265_RS02140 0.21 +1.0 539,507 + CA265_RS02140 0.21 +0.1
Or see this region's nucleotide sequence