Experiment: Fusidic 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3866 and Shew_3867 are separated by 3 nucleotides Shew_3867 and Shew_3868 overlap by 34 nucleotides Shew_3868 and rpmH are separated by 9 nucleotides
Shew_3866: Shew_3866 - 60 kDa inner membrane insertion protein (RefSeq), at 4,599,900 to 4,601,528
_3866
Shew_3867: Shew_3867 - hypothetical protein (RefSeq), at 4,601,532 to 4,601,786
_3867
Shew_3868: Shew_3868 - ribonuclease P protein component (RefSeq), at 4,601,753 to 4,602,115
_3868
Shew_3869: rpmH - 50S ribosomal protein L34 (RefSeq), at 4,602,125 to 4,602,262
rpmH
Position (kb)
4601
4602 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4601.708 kb on + strand, within Shew_3867 at 4601.708 kb on + strand, within Shew_3867 at 4601.708 kb on + strand, within Shew_3867 at 4601.708 kb on + strand, within Shew_3867 at 4601.708 kb on + strand, within Shew_3867 at 4601.716 kb on - strand, within Shew_3867 at 4601.716 kb on - strand, within Shew_3867 at 4601.716 kb on - strand, within Shew_3867 at 4601.716 kb on - strand, within Shew_3867 at 4601.716 kb on - strand, within Shew_3867 at 4601.716 kb on - strand, within Shew_3867 at 4602.418 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.03125 mg/ml remove 4,601,708 + Shew_3867 0.69 -3.2 4,601,708 + Shew_3867 0.69 -0.7 4,601,708 + Shew_3867 0.69 -1.5 4,601,708 + Shew_3867 0.69 -1.1 4,601,708 + Shew_3867 0.69 -1.4 4,601,716 - Shew_3867 0.72 -1.5 4,601,716 - Shew_3867 0.72 -0.7 4,601,716 - Shew_3867 0.72 -2.1 4,601,716 - Shew_3867 0.72 -0.1 4,601,716 - Shew_3867 0.72 -1.2 4,601,716 - Shew_3867 0.72 +0.9 4,602,418 + +0.4
Or see this region's nucleotide sequence