Experiment: Fusidic 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3322 and Shew_3323 overlap by 81 nucleotides Shew_3323 and Shew_3324 are separated by 57 nucleotides Shew_3324 and Shew_3325 are separated by 445 nucleotides
Shew_3322: Shew_3322 - transporter DMT superfamily protein (RefSeq), at 3,962,234 to 3,963,160
_3322
Shew_3323: Shew_3323 - lipase-like (RefSeq), at 3,963,080 to 3,963,715
_3323
Shew_3324: Shew_3324 - hypothetical protein (RefSeq), at 3,963,773 to 3,964,834
_3324
Shew_3325: Shew_3325 - major facilitator transporter (RefSeq), at 3,965,280 to 3,966,449
_3325
Position (kb)
3963
3964
3965 Strain fitness (log2 ratio)
-1
0
1 at 3962.789 kb on - strand, within Shew_3322 at 3962.805 kb on - strand, within Shew_3322 at 3962.851 kb on - strand, within Shew_3322 at 3962.851 kb on - strand, within Shew_3322 at 3962.990 kb on - strand, within Shew_3322 at 3963.043 kb on + strand, within Shew_3322 at 3963.043 kb on + strand, within Shew_3322 at 3963.051 kb on - strand, within Shew_3322 at 3963.067 kb on + strand, within Shew_3322 at 3963.075 kb on - strand at 3963.384 kb on + strand, within Shew_3323 at 3963.629 kb on - strand, within Shew_3323 at 3964.010 kb on - strand, within Shew_3324 at 3964.511 kb on - strand, within Shew_3324 at 3964.525 kb on + strand, within Shew_3324 at 3964.586 kb on - strand, within Shew_3324 at 3965.031 kb on - strand at 3965.766 kb on + strand, within Shew_3325 at 3965.774 kb on - strand, within Shew_3325 at 3965.820 kb on + strand, within Shew_3325
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.03125 mg/ml remove 3,962,789 - Shew_3322 0.60 +0.0 3,962,805 - Shew_3322 0.62 +0.4 3,962,851 - Shew_3322 0.67 +0.0 3,962,851 - Shew_3322 0.67 -0.3 3,962,990 - Shew_3322 0.82 -0.4 3,963,043 + Shew_3322 0.87 +0.1 3,963,043 + Shew_3322 0.87 +0.2 3,963,051 - Shew_3322 0.88 +0.1 3,963,067 + Shew_3322 0.90 +0.1 3,963,075 - +0.3 3,963,384 + Shew_3323 0.48 +0.1 3,963,629 - Shew_3323 0.86 -0.3 3,964,010 - Shew_3324 0.22 -1.3 3,964,511 - Shew_3324 0.69 -0.7 3,964,525 + Shew_3324 0.71 -0.6 3,964,586 - Shew_3324 0.77 -0.0 3,965,031 - +0.1 3,965,766 + Shew_3325 0.42 +0.5 3,965,774 - Shew_3325 0.42 -0.1 3,965,820 + Shew_3325 0.46 +0.1
Or see this region's nucleotide sequence