Strain Fitness in Shewanella loihica PV-4 around Shew_2417
Experiment: Fusidic 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Fusidic 0.03125 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,837,093 | - | Shew_2416 | 0.59 | +0.7 | |
2,837,372 | + | Shew_2416 | 0.84 | +1.7 | |
2,837,478 | - | +0.3 | |||
2,838,019 | + | Shew_2417 | 0.37 | +1.3 | |
2,838,468 | + | Shew_2417 | 0.84 | +1.1 | |
2,838,476 | - | Shew_2417 | 0.85 | +0.5 | |
2,838,839 | - | Shew_2418 | 0.27 | +0.5 | |
2,839,042 | - | Shew_2418 | 0.65 | +0.6 | |
2,839,042 | - | Shew_2418 | 0.65 | +0.6 | |
2,839,131 | + | Shew_2418 | 0.82 | -0.2 | |
2,839,258 | + | +0.1 | |||
2,839,528 | - | Shew_2419 | 0.28 | +1.0 | |
2,839,567 | + | Shew_2419 | 0.36 | +1.1 |
Or see this region's nucleotide sequence