Strain Fitness in Shewanella loihica PV-4 around Shew_1510

Experiment: Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasnB and Shew_1510 are separated by 339 nucleotidesShew_1510 and Shew_1511 are separated by 221 nucleotides Shew_1509: asnB - asparagine synthetase B (RefSeq), at 1,730,192 to 1,731,850 asnB Shew_1510: Shew_1510 - peptidase M28 (RefSeq), at 1,732,190 to 1,733,851 _1510 Shew_1511: Shew_1511 - UMP phosphatase (RefSeq), at 1,734,073 to 1,734,831 _1511 Position (kb) 1732 1733 1734Strain fitness (log2 ratio) -1 0 1at 1731.253 kb on - strand, within asnBat 1731.253 kb on - strand, within asnBat 1731.408 kb on + strand, within asnBat 1731.416 kb on - strand, within asnBat 1731.739 kb on + strandat 1731.883 kb on + strandat 1732.769 kb on - strand, within Shew_1510at 1733.286 kb on - strand, within Shew_1510at 1733.816 kb on + strandat 1733.832 kb on - strandat 1734.148 kb on - strandat 1734.290 kb on + strand, within Shew_1511at 1734.367 kb on + strand, within Shew_1511

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.03125 mg/ml
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1,731,253 - asnB Shew_1509 0.64 +0.2
1,731,253 - asnB Shew_1509 0.64 +0.0
1,731,408 + asnB Shew_1509 0.73 -0.3
1,731,416 - asnB Shew_1509 0.74 -0.3
1,731,739 + -0.1
1,731,883 + +0.2
1,732,769 - Shew_1510 0.35 -0.1
1,733,286 - Shew_1510 0.66 +0.3
1,733,816 + -0.0
1,733,832 - -0.9
1,734,148 - +0.0
1,734,290 + Shew_1511 0.29 -0.1
1,734,367 + Shew_1511 0.39 +0.2

Or see this region's nucleotide sequence