Experiment: Fusidic 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1484 and Shew_1485 overlap by 23 nucleotides Shew_1485 and Shew_1486 are separated by 48 nucleotides Shew_1486 and Shew_1487 overlap by 4 nucleotides
Shew_1484: Shew_1484 - cyclopropane-fatty-acyl-phospholipid synthase (RefSeq), at 1,708,852 to 1,710,132
_1484
Shew_1485: Shew_1485 - hypothetical protein (RefSeq), at 1,710,110 to 1,710,619
_1485
Shew_1486: Shew_1486 - hypothetical protein (RefSeq), at 1,710,668 to 1,711,156
_1486
Shew_1487: Shew_1487 - hypothetical protein (RefSeq), at 1,711,153 to 1,711,686
_1487
Position (kb)
1710
1711 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1709.403 kb on + strand, within Shew_1484 at 1709.911 kb on - strand, within Shew_1484 at 1710.065 kb on + strand at 1710.198 kb on + strand, within Shew_1485 at 1710.212 kb on + strand, within Shew_1485 at 1710.482 kb on - strand, within Shew_1485 at 1710.516 kb on + strand, within Shew_1485 at 1710.538 kb on + strand, within Shew_1485 at 1710.546 kb on - strand, within Shew_1485 at 1710.727 kb on - strand, within Shew_1486 at 1710.796 kb on - strand, within Shew_1486 at 1710.801 kb on - strand, within Shew_1486 at 1711.001 kb on - strand, within Shew_1486 at 1711.130 kb on - strand at 1711.306 kb on - strand, within Shew_1487 at 1711.427 kb on + strand, within Shew_1487 at 1711.524 kb on - strand, within Shew_1487
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.03125 mg/ml remove 1,709,403 + Shew_1484 0.43 +2.8 1,709,911 - Shew_1484 0.83 +0.7 1,710,065 + +0.0 1,710,198 + Shew_1485 0.17 +1.8 1,710,212 + Shew_1485 0.20 -0.1 1,710,482 - Shew_1485 0.73 +0.4 1,710,516 + Shew_1485 0.80 +0.2 1,710,538 + Shew_1485 0.84 -0.1 1,710,546 - Shew_1485 0.85 +1.0 1,710,727 - Shew_1486 0.12 -0.1 1,710,796 - Shew_1486 0.26 +0.6 1,710,801 - Shew_1486 0.27 +1.5 1,711,001 - Shew_1486 0.68 +0.2 1,711,130 - +0.4 1,711,306 - Shew_1487 0.29 +0.2 1,711,427 + Shew_1487 0.51 +0.5 1,711,524 - Shew_1487 0.69 -0.1
Or see this region's nucleotide sequence