Strain Fitness in Shewanella loihica PV-4 around Shew_0359

Experiment: Fusidic 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0358 and fre are separated by 69 nucleotidesfre and Shew_0360 are separated by 134 nucleotides Shew_0358: Shew_0358 - transcriptional regulator, CadC (RefSeq), at 406,528 to 407,808 _0358 Shew_0359: fre - FMN reductase (RefSeq), at 407,878 to 408,576 fre Shew_0360: Shew_0360 - UbiD family decarboxylase (RefSeq), at 408,711 to 410,192 _0360 Position (kb) 407 408 409Strain fitness (log2 ratio) -1 0 1at 407.263 kb on - strand, within Shew_0358at 407.503 kb on + strand, within Shew_0358at 407.503 kb on + strand, within Shew_0358at 407.594 kb on + strand, within Shew_0358at 407.771 kb on - strandat 407.810 kb on - strandat 407.853 kb on + strandat 408.011 kb on - strand, within freat 408.109 kb on - strand, within freat 408.161 kb on - strand, within freat 408.237 kb on + strand, within fre

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.03125 mg/ml
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407,263 - Shew_0358 0.57 +0.2
407,503 + Shew_0358 0.76 +0.3
407,503 + Shew_0358 0.76 +1.2
407,594 + Shew_0358 0.83 -0.1
407,771 - +0.3
407,810 - +0.2
407,853 + -0.0
408,011 - fre Shew_0359 0.19 +1.6
408,109 - fre Shew_0359 0.33 +1.5
408,161 - fre Shew_0359 0.40 +1.4
408,237 + fre Shew_0359 0.51 +1.7

Or see this region's nucleotide sequence