Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2945

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2943 and Dshi_2944 overlap by 4 nucleotidesDshi_2944 and Dshi_2945 overlap by 4 nucleotidesDshi_2945 and Dshi_2946 overlap by 4 nucleotides Dshi_2943: Dshi_2943 - hypothetical protein (RefSeq), at 3,102,640 to 3,103,638 _2943 Dshi_2944: Dshi_2944 - Extensin family protein (RefSeq), at 3,103,635 to 3,104,450 _2944 Dshi_2945: Dshi_2945 - Prephenate dehydrogenase (RefSeq), at 3,104,447 to 3,105,388 _2945 Dshi_2946: Dshi_2946 - histidinol-phosphate aminotransferase (RefSeq), at 3,105,385 to 3,106,470 _2946 Position (kb) 3104 3105 3106Strain fitness (log2 ratio) -1 0 1at 3103.497 kb on - strand, within Dshi_2943at 3103.632 kb on + strandat 3103.656 kb on - strandat 3103.733 kb on - strand, within Dshi_2944at 3103.854 kb on + strand, within Dshi_2944at 3103.857 kb on - strand, within Dshi_2944at 3103.908 kb on + strand, within Dshi_2944at 3104.089 kb on - strand, within Dshi_2944at 3104.259 kb on + strand, within Dshi_2944at 3104.262 kb on - strand, within Dshi_2944at 3104.278 kb on - strand, within Dshi_2944at 3104.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,103,497 - Dshi_2943 0.86 -0.3
3,103,632 + -0.3
3,103,656 - -0.0
3,103,733 - Dshi_2944 0.12 -0.5
3,103,854 + Dshi_2944 0.27 -0.0
3,103,857 - Dshi_2944 0.27 -0.6
3,103,908 + Dshi_2944 0.33 -0.3
3,104,089 - Dshi_2944 0.56 -0.8
3,104,259 + Dshi_2944 0.76 -0.7
3,104,262 - Dshi_2944 0.77 -0.8
3,104,278 - Dshi_2944 0.79 +1.0
3,104,507 + +0.5

Or see this region's nucleotide sequence